CsaV3_2G032160 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G032160
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionATP synthase subunit b', chloroplastic
Locationchr2 : 21207880 .. 21209282 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTAGAAGAAGTGTTGTGTTTAAGATTTAGTGCCCCTTTTTATTTGTTTTCATACTAAGTTCTTTCTCTTTCAACATAATAAATTTTCAATCCATCTATTCAGCATGTGTTGTTTATTTACATTTTTGTTTTATTAGGAAAGATAAAATAAAACCTGAAAATTCATTTGACAGCTGTGGGATTTGAACCCACGCCCTTTCGGACCAGAGCCTAAATCTGGCGCCTTAGACCACTCGGCCAAACTGTCGGAATTGAAAGGTGAGTAACTAAGATGGATTCAATTATATACAAATGAATTGGGCTAAGCCCATACAATGAAGAAGAGTTCGGCCCATTTCATTCACGAGCATGGCAAATGGCACGTGTGAAGAAATCCCAATCTGTTCTACTAGGTGGTGGCGAAGCGAAGCAAAGCAAGCTTAGCCTTATCAAATTGTGTGGCGAAGAATGAAGATTGTACAATGTAGATAGAAAAAAATCCCCCATTCCCATTCCCAATTCCCTTTCCAATCTCCACCCCATTTCTTTTCTCAATCCGCCATTGTTATCTCTCTCAGACCTCTGTAACCTTCATTTCTACTCAGCCATGGCGAACGTTATCATGGCCTCTTCCAAACCCCCCTCTCCTCCCCTTTCCATCTCCAACAAAACCCCCAAATTCTCCATCCCCAAAACCCTAACCCTAATCCCACAATTCCTCAAAAAGCCCCAATCCATCTCCCTCTCCACCTCCACTCTCAAATCCCTCTCCCTCTTCGCCGCTACATCTCTCTCCTTCGCTCCCCCTTCCCTCGCTGAAGAGATCGAAAAGGCCGCTCTCTTCGACTTCAACCTCACTCTCCCTATCATGATGGCTCAATTCCTCCTCCTCATGGTCGGTCTCGACAAACTCTACTTCTCCCCACTCGGGAAATTCATGGACGAAAGAGACACCGCCATTAAAGAGAAGCTGAATAGCGTTAAAGACACTTCCGAGGAGGTCAAGCAGCTGGACGATCAAGCTGCCGCTGTCATGAGAGCTGCTAGAGCGGAGATTTCGGCGGCGCTTACTAAGATGAAGAAGGAAACTCAAGCGGAGGTGGAGGAGAAACTGGCGGAGGGGAGAAAGAGAATTGATGTGGAGTTGCAGGAAGCATTGGCGAATTTGGAGAATCAGAAAGCGGAAACCATTAAATCACTTGATGCTCAAATTGCTGCTCTTAGTGATGACATCGTCAAAAAGGTTCTTCCTGTTTAAATCCATTCCTGTTCTGTTCTGTTCTTAGGGTTCTAATGGGCTTTTACCATCGATCGATCATTATATGGGTTTCGATCTGATTTCATTTCTACTTATATATTTTTGCCTTGTAATCATAATGAACCAACAAATTCAATGTATAAAACAATTAAACATCGTTTTTTTT

mRNA sequence

ATGGCGAACGTTATCATGGCCTCTTCCAAACCCCCCTCTCCTCCCCTTTCCATCTCCAACAAAACCCCCAAATTCTCCATCCCCAAAACCCTAACCCTAATCCCACAATTCCTCAAAAAGCCCCAATCCATCTCCCTCTCCACCTCCACTCTCAAATCCCTCTCCCTCTTCGCCGCTACATCTCTCTCCTTCGCTCCCCCTTCCCTCGCTGAAGAGATCGAAAAGGCCGCTCTCTTCGACTTCAACCTCACTCTCCCTATCATGATGGCTCAATTCCTCCTCCTCATGGTCGGTCTCGACAAACTCTACTTCTCCCCACTCGGGAAATTCATGGACGAAAGAGACACCGCCATTAAAGAGAAGCTGAATAGCGTTAAAGACACTTCCGAGGAGGTCAAGCAGCTGGACGATCAAGCTGCCGCTGTCATGAGAGCTGCTAGAGCGGAGATTTCGGCGGCGCTTACTAAGATGAAGAAGGAAACTCAAGCGGAGGTGGAGGAGAAACTGGCGGAGGGGAGAAAGAGAATTGATGTGGAGTTGCAGGAAGCATTGGCGAATTTGGAGAATCAGAAAGCGGAAACCATTAAATCACTTGATGCTCAAATTGCTGCTCTTAGTGATGACATCGTCAAAAAGGTTCTTCCTGTTTAA

Coding sequence (CDS)

ATGGCGAACGTTATCATGGCCTCTTCCAAACCCCCCTCTCCTCCCCTTTCCATCTCCAACAAAACCCCCAAATTCTCCATCCCCAAAACCCTAACCCTAATCCCACAATTCCTCAAAAAGCCCCAATCCATCTCCCTCTCCACCTCCACTCTCAAATCCCTCTCCCTCTTCGCCGCTACATCTCTCTCCTTCGCTCCCCCTTCCCTCGCTGAAGAGATCGAAAAGGCCGCTCTCTTCGACTTCAACCTCACTCTCCCTATCATGATGGCTCAATTCCTCCTCCTCATGGTCGGTCTCGACAAACTCTACTTCTCCCCACTCGGGAAATTCATGGACGAAAGAGACACCGCCATTAAAGAGAAGCTGAATAGCGTTAAAGACACTTCCGAGGAGGTCAAGCAGCTGGACGATCAAGCTGCCGCTGTCATGAGAGCTGCTAGAGCGGAGATTTCGGCGGCGCTTACTAAGATGAAGAAGGAAACTCAAGCGGAGGTGGAGGAGAAACTGGCGGAGGGGAGAAAGAGAATTGATGTGGAGTTGCAGGAAGCATTGGCGAATTTGGAGAATCAGAAAGCGGAAACCATTAAATCACTTGATGCTCAAATTGCTGCTCTTAGTGATGACATCGTCAAAAAGGTTCTTCCTGTTTAA

Protein sequence

MANVIMASSKPPSPPLSISNKTPKFSIPKTLTLIPQFLKKPQSISLSTSTLKSLSLFAATSLSFAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKLYFSPLGKFMDERDTAIKEKLNSVKDTSEEVKQLDDQAAAVMRAARAEISAALTKMKKETQAEVEEKLAEGRKRIDVELQEALANLENQKAETIKSLDAQIAALSDDIVKKVLPV
Homology
[Close]
BLAST of CsaV3_2G032160 vs. NCBI nr
Match: XP_004138722.1 (PREDICTED: ATP synthase subunit b', chloroplastic [Cucumis sativus] >KGN62960.1 hypothetical protein Csa_2G381850 [Cucumis sativus])

HSP 1 Score: 322.8 bits (826), Expect = 9.0e-85
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0 

Query: 1   MANVIMASSKPPSPPLSISNKTPKFSIPKTLTLIPQFLKKPQSISLSTSTLKSLSLFAAT 60
           MANVIMASSKPPSPPLSISNKTPKFSIPKTLTLIPQFLKKPQSISLSTSTLKSLSLFAAT
Sbjct: 1   MANVIMASSKPPSPPLSISNKTPKFSIPKTLTLIPQFLKKPQSISLSTSTLKSLSLFAAT 60

Query: 61  SLSFAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKLYFSPLGKFMDERDTAIKE 120
           SLSFAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKLYFSPLGKFMDERDTAIKE
Sbjct: 61  SLSFAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKLYFSPLGKFMDERDTAIKE 120

Query: 121 KLNSVKDTSEEVKQLDDQAAAVMRAARAEISAALTKMXXXXXXXXXXXXXXXXXXXXXXX 180
           KLNSVKDTSEEVKQLDDQAAAVMRAARAEISAALTKMXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 KLNSVKDTSEEVKQLDDQAAAVMRAARAEISAALTKMXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXENQKAETIKSLDAQIAALSDDIVKKVLPV 217
           XXXXXXXENQKAETIKSLDAQIAALSDDIVKKVLPV
Sbjct: 181 XXXXXXXENQKAETIKSLDAQIAALSDDIVKKVLPV 216

[Close]
BLAST of CsaV3_2G032160 vs. NCBI nr
Match: XP_008445233.1 (PREDICTED: ATP synthase subunit b', chloroplastic [Cucumis melo])

HSP 1 Score: 275.4 bits (703), Expect = 1.7e-70
Identity = 194/216 (89.81%), Postives = 198/216 (91.67%), Query Frame = 0 

Query: 1   MANVIMASSKPPSPPLSISNKTPKFSIPKTLTLIPQFLKKPQSISLSTSTLKSLSLFAAT 60
           MANVIMASSKP SPPLSISNKTPKFSIPKTLTLIPQFLK PQSISLSTSTLKSLSLFAAT
Sbjct: 1   MANVIMASSKPLSPPLSISNKTPKFSIPKTLTLIPQFLKNPQSISLSTSTLKSLSLFAAT 60

Query: 61  SLSFAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKLYFSPLGKFMDERDTAIKE 120
           SLSFAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDK+YFSPLGKFMDERD AIKE
Sbjct: 61  SLSFAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKIYFSPLGKFMDERDAAIKE 120

Query: 121 KLNSVKDTSEEVKQLDDQAAAVMRAARAEISAALTKMXXXXXXXXXXXXXXXXXXXXXXX 180
           KL+SVKDTSE VKQLD+QAAAVMRAARAEISAAL K XXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 KLSSVKDTSEGVKQLDEQAAAVMRAARAEISAALNKXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXENQKAETIKSLDAQIAALSDDIVKKVLPV 217
           XXXXXXX            AQIAALSD+IVKKVLPV
Sbjct: 181 XXXXXXXXXXXXXXXXXXXAQIAALSDEIVKKVLPV 216

[Close]
BLAST of CsaV3_2G032160 vs. NCBI nr
Match: XP_022951454.1 (ATP synthase subunit b', chloroplastic [Cucurbita moschata])

HSP 1 Score: 265.4 bits (677), Expect = 1.7e-67
Identity = 193/219 (88.13%), Postives = 197/219 (89.95%), Query Frame = 0 

Query: 1   MANVIMASSKPPSPPLSI-SNKTPKFSIPK--TLTLIPQFLKKPQSISLSTSTLKSLSLF 60
           MANVIMASSKP SPP SI S KTPKFSIPK  TLTL P  LK PQ +SLST+TLKSLSL 
Sbjct: 1   MANVIMASSKPLSPPPSIASTKTPKFSIPKTLTLTLTPTILKNPQFVSLSTTTLKSLSLI 60

Query: 61  AATSLSFAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKLYFSPLGKFMDERDTA 120
           AATSLSFAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKLYFSPLGKFMDERD A
Sbjct: 61  AATSLSFAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKLYFSPLGKFMDERDAA 120

Query: 121 IKEKLNSVKDTSEEVKQLDDQAAAVMRAARAEISAALTKMXXXXXXXXXXXXXXXXXXXX 180
           IKEKLNSVKDTSEEVKQLD+QAAAVMRAARAEIS  L   XXXXXXXXXXXXXXXXXXXX
Sbjct: 121 IKEKLNSVKDTSEEVKQLDEQAAAVMRAARAEISXXLNXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXENQKAETIKSLDAQIAALSDDIVKKVLPV 217
           XXXXXXXXXX   K ETIKSLDAQIAALSD+IVKKVLPV
Sbjct: 181 XXXXXXXXXXXXXKVETIKSLDAQIAALSDEIVKKVLPV 219

[Close]
BLAST of CsaV3_2G032160 vs. NCBI nr
Match: XP_023538440.1 (ATP synthase subunit b', chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 263.8 bits (673), Expect = 5.0e-67
Identity = 192/219 (87.67%), Postives = 197/219 (89.95%), Query Frame = 0 

Query: 1   MANVIMASSKPPSPPLSI-SNKTPKFSIPK--TLTLIPQFLKKPQSISLSTSTLKSLSLF 60
           MANVIMASSKP SPP SI S KTPKFSIPK  TLTL P  LK P+ +SLST+TLKSLSL 
Sbjct: 1   MANVIMASSKPLSPPPSIASTKTPKFSIPKTLTLTLTPTILKNPKFVSLSTTTLKSLSLI 60

Query: 61  AATSLSFAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKLYFSPLGKFMDERDTA 120
           AATSLSFAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKLYFSPLGKFMDERD A
Sbjct: 61  AATSLSFAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKLYFSPLGKFMDERDAA 120

Query: 121 IKEKLNSVKDTSEEVKQLDDQAAAVMRAARAEISAALTKMXXXXXXXXXXXXXXXXXXXX 180
           IKEKLNSVKDTSEEVKQLD+QAAAVMRAARAEIS  L   XXXXXXXXXXXXXXXXXXXX
Sbjct: 121 IKEKLNSVKDTSEEVKQLDEQAAAVMRAARAEISXXLNXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXENQKAETIKSLDAQIAALSDDIVKKVLPV 217
           XXXXXXXXXX   K ETIKSLDAQIAALSD+IVKKVLPV
Sbjct: 181 XXXXXXXXXXXXXKVETIKSLDAQIAALSDEIVKKVLPV 219

[Close]
BLAST of CsaV3_2G032160 vs. NCBI nr
Match: XP_023002493.1 (ATP synthase subunit b', chloroplastic [Cucurbita maxima])

HSP 1 Score: 263.1 bits (671), Expect = 8.5e-67
Identity = 193/219 (88.13%), Postives = 196/219 (89.50%), Query Frame = 0 

Query: 1   MANVIMASSKPPSPPLSI-SNKTPKFSIPK--TLTLIPQFLKKPQSISLSTSTLKSLSLF 60
           MANVIMASSKP S P SI S KTPKFSIPK  TLTL P  LK PQ +SLSTSTLKSLSL 
Sbjct: 1   MANVIMASSKPLSAPPSIASTKTPKFSIPKTLTLTLTPTILKNPQFLSLSTSTLKSLSLI 60

Query: 61  AATSLSFAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKLYFSPLGKFMDERDTA 120
           AATSLSFAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKLYFSPLGKFMDERD A
Sbjct: 61  AATSLSFAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKLYFSPLGKFMDERDAA 120

Query: 121 IKEKLNSVKDTSEEVKQLDDQAAAVMRAARAEISAALTKMXXXXXXXXXXXXXXXXXXXX 180
           IKEKLNSVKDTSEEVKQLD+QAAAVMRAARAEIS  L   XXXXXXXXXXXXXXXXXXXX
Sbjct: 121 IKEKLNSVKDTSEEVKQLDEQAAAVMRAARAEISXXLNXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXENQKAETIKSLDAQIAALSDDIVKKVLPV 217
           XXXXXXXXXX   K ETIKSLDAQIAALSD+IVKKVLPV
Sbjct: 181 XXXXXXXXXXXXXKVETIKSLDAQIAALSDEIVKKVLPV 219

[Close]
BLAST of CsaV3_2G032160 vs. TAIR10
Match: AT4G32260.1 (ATPase, F0 complex, subunit B/B', bacterial/chloroplast)

HSP 1 Score: 144.1 bits (362), Expect = 1.0e-34
Identity = 136/225 (60.44%), Postives = 159/225 (70.67%), Query Frame = 0 

Query: 2   ANVIMASSKPPSPPLSISN-------KTPKFS----IPKTLTLIPQFLKKPQSISLSTST 61
           AN IMASSK   P +S+S+       + PKF+    IPK+LT       K  ++SLS++T
Sbjct: 3   ANSIMASSK---PLISLSSNQQPNRVQIPKFAKLPQIPKSLTSSTDLRSK--ALSLSSAT 62

Query: 62  LKSLSLFAATSLSFAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKLYFSPLGKF 121
            KSL+L AA    FAPPS+AE +EKA LFDFNLTLPI++ +FL LM  LDK+Y+SPLG F
Sbjct: 63  AKSLALIAA----FAPPSMAEAMEKAQLFDFNLTLPIIVVEFLFLMFALDKVYYSPLGNF 122

Query: 122 MDERDTAIKEKLNSVKDTSEEVKQLDDQAAAVMRAARAEISAALTKMXXXXXXXXXXXXX 181
           MD+RD +IKEKL SVKDTS EVK+LD+QAAAVMRAARA         XXXXXXXXXXXXX
Sbjct: 123 MDQRDASIKEKLASVKDTSTEVKELDEQAAAVMRAARAXXXXXXXXXXXXXXXXXXXXXX 182

Query: 182 XXXXXXXXXXXXXXXXXENQKAETIKSLDAQIAALSDDIVKKVLP 216
           XXXXXXXXXXXXXXXXX               AALS+DIVKKVLP
Sbjct: 183 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAALSEDIVKKVLP 218

[Close]
BLAST of CsaV3_2G032160 vs. Swiss-Prot
Match: sp|P31853|ATPX_SPIOL (ATP synthase subunit b', chloroplastic OS=Spinacia oleracea OX=3562 GN=ATPG PE=1 SV=2)

HSP 1 Score: 129.4 bits (324), Expect = 4.8e-29
Identity = 129/221 (58.37%), Postives = 151/221 (68.33%), Query Frame = 0 

Query: 1   MANVIMASSKP--PSPPLSISNKTPKFSIPKTLTLIPQFLKKPQSISLSTSTLKSLSLFA 60
           MAN+++ASS    P           KF + KT  L     + P    L+ S LKS ++ A
Sbjct: 1   MANMLVASSSKTLPXXXXXXXXXXXKFPLLKTPLLKLSPPQLPPLKHLNLSVLKSAAITA 60

Query: 61  A-TSLSF--APPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKLYFSPLGKFMDERD 120
              +LSF    PSLAEEIEKA+LFDFNLTLPI+MA+FL LM  LDK+Y++PLG FMD+RD
Sbjct: 61  TPLTLSFLLPYPSLAEEIEKASLFDFNLTLPIIMAEFLFLMFALDKIYYTPLGDFMDKRD 120

Query: 121 TAIKEKLNSVKDTSEEVKQLDDQAAAVMRAARAEISAALTKMXXXXXXXXXXXXXXXXXX 180
            +IKE+L+ VKDTS EVKQL++QA AVMRAARAE        XXXXXXXXXXXXXXXXXX
Sbjct: 121 ASIKEQLSGVKDTSSEVKQLEEQANAVMRAARAEXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXENQKAETIKSLDAQIAALSDDIVKKVLPV 217
           XXXXXXXXXXXX              I+ALSDDIVKKVLPV
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXISALSDDIVKKVLPV 221

[Close]
BLAST of CsaV3_2G032160 vs. Swiss-Prot
Match: sp|A8J785|ATPX_CHLRE (ATP synthase subunit b', chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=ATPG PE=1 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 4.5e-19
Identity = 58/163 (35.58%), Postives = 90/163 (55.21%), Query Frame = 0 

Query: 53  SLSLFAATSLSFAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKLYFSPLGKFMD 112
           +LS   A +L   P +     E   +FDFNLTLP+M  +FLLLMV L+K +F+P+GK +D
Sbjct: 46  ALSAIVANALMAMPAA----AEAGKIFDFNLTLPVMAGEFLLLMVFLEKTWFTPVGKVLD 105

Query: 113 ERDTAIKEKLNSVKDTSEEVKQLDDQAAAVMRAARAEISAALTKMXXXXXXXXXXXXXXX 172
           ERD  I+ KL SVKD + +V +L  +A  ++++AR+++SA +                  
Sbjct: 106 ERDNLIRSKLGSVKDNTGDVDKLVLEAETILKSARSDVSAMINTKKAAKQSELDKTYNEA 165

Query: 173 XXXXXXXXXXXXXXXENQKAETIKSLDAQIAALSDDIVKKVLP 216
                          E + A  +KSLDAQ+  +S +++K+VLP
Sbjct: 166 KAKITAEVESSIAGLEQESASMLKSLDAQVDKISAEVLKRVLP 204

[Close]
BLAST of CsaV3_2G032160 vs. Swiss-Prot
Match: sp|Q112Z3|ATPX_TRIEI (ATP synthase subunit b' OS=Trichodesmium erythraeum (strain IMS101) OX=203124 GN=atpG PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.0e-07
Identity = 32/71 (45.07%), Postives = 43/71 (60.56%), Query Frame = 0 

Query: 68  SLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKLYFSPLGKFMDERDTAIKEKLNSVKD 127
           ++ E  EK  LFD N TLP+M  QFLLL   LDK+++ PLGK +D R   I+E     K+
Sbjct: 9   AVEEVAEKGGLFDINATLPLMAIQFLLLAFVLDKIFYKPLGKAIDSRADYIRENQVKAKE 68

Query: 128 TSEEVKQLDDQ 139
              + KQL +Q
Sbjct: 69  RLAKAKQLAEQ 79

[Close]
BLAST of CsaV3_2G032160 vs. Swiss-Prot
Match: sp|P48085|ATPX_CYAPA (ATP synthase B' chain, cyanelle OS=Cyanophora paradoxa OX=2762 GN=atpG PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.0e-07
Identity = 44/152 (28.95%), Postives = 67/152 (44.08%), Query Frame = 0 

Query: 69  LAEEIEKA----ALFDFNLTLPIMMAQFLLLMVGLDKLYFSPLGKFMDERDTAIKEKLNS 128
           LA E E A     LFDF+ TLP+MM Q L+LM+ L+ +++ PL K +DER   I+   N 
Sbjct: 8   LAIETEAAKPEGGLFDFDATLPVMMVQLLVLMLILNAVFYKPLIKILDERKEYIQSNFNE 67

Query: 129 VKDTSEEVKQLDDQAAAVMRAARAEISAALTKMXXXXXXXXXXXXXXXXXXXXXXXXXXX 188
            +    +  +L  Q    +  AR   S                                 
Sbjct: 68  AEKCLAQAAELTTQYETKITDARQNASKLTNTTRSEIQRFVSEKLEEAQKKADSELASAT 127

Query: 189 XXXENQKAETIKSLDAQIAALSDDIVKKVLPV 217
              E QK E +KSL++++  LS  I++K+L +
Sbjct: 128 NKLELQKDEALKSLESEVQTLSTKILEKLLGI 159

[Close]
BLAST of CsaV3_2G032160 vs. Swiss-Prot
Match: sp|P51245|ATPX_PORPU (ATP synthase subunit b', chloroplastic OS=Porphyra purpurea OX=2787 GN=atpG PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.2e-07
Identity = 36/94 (38.30%), Postives = 56/94 (59.57%), Query Frame = 0 

Query: 64  FAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKLYFSPLGKFMDERDTAIKEKLN 123
           + P  LAEEIE   LFDFN TLP+M  QFL+LM+ L+ +++ P+ K +DERD  I+  L 
Sbjct: 3   YLPLLLAEEIE-GGLFDFNGTLPLMALQFLILMLLLNTIFYKPVTKILDERDEYIRTTLT 62

Query: 124 SVKD----TSEEVKQLDDQAAAVMRAARAEISAA 154
           +         E   + ++  +   R A+A+I+A+
Sbjct: 63  TASSMLVKADELAAKYEEDLSKARRDAQAKIAAS 95

[Close]
BLAST of CsaV3_2G032160 vs. TrEMBL
Match: tr|A0A0A0LM10|A0A0A0LM10_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G381850 PE=3 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 6.0e-85
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0 

Query: 1   MANVIMASSKPPSPPLSISNKTPKFSIPKTLTLIPQFLKKPQSISLSTSTLKSLSLFAAT 60
           MANVIMASSKPPSPPLSISNKTPKFSIPKTLTLIPQFLKKPQSISLSTSTLKSLSLFAAT
Sbjct: 1   MANVIMASSKPPSPPLSISNKTPKFSIPKTLTLIPQFLKKPQSISLSTSTLKSLSLFAAT 60

Query: 61  SLSFAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKLYFSPLGKFMDERDTAIKE 120
           SLSFAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKLYFSPLGKFMDERDTAIKE
Sbjct: 61  SLSFAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKLYFSPLGKFMDERDTAIKE 120

Query: 121 KLNSVKDTSEEVKQLDDQAAAVMRAARAEISAALTKMXXXXXXXXXXXXXXXXXXXXXXX 180
           KLNSVKDTSEEVKQLDDQAAAVMRAARAEISAALTKMXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 KLNSVKDTSEEVKQLDDQAAAVMRAARAEISAALTKMXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXENQKAETIKSLDAQIAALSDDIVKKVLPV 217
           XXXXXXXENQKAETIKSLDAQIAALSDDIVKKVLPV
Sbjct: 181 XXXXXXXENQKAETIKSLDAQIAALSDDIVKKVLPV 216

[Close]
BLAST of CsaV3_2G032160 vs. TrEMBL
Match: tr|A0A1S3BD20|A0A1S3BD20_CUCME (ATP synthase subunit b', chloroplastic OS=Cucumis melo OX=3656 GN=LOC103488320 PE=3 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.1e-70
Identity = 194/216 (89.81%), Postives = 198/216 (91.67%), Query Frame = 0 

Query: 1   MANVIMASSKPPSPPLSISNKTPKFSIPKTLTLIPQFLKKPQSISLSTSTLKSLSLFAAT 60
           MANVIMASSKP SPPLSISNKTPKFSIPKTLTLIPQFLK PQSISLSTSTLKSLSLFAAT
Sbjct: 1   MANVIMASSKPLSPPLSISNKTPKFSIPKTLTLIPQFLKNPQSISLSTSTLKSLSLFAAT 60

Query: 61  SLSFAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKLYFSPLGKFMDERDTAIKE 120
           SLSFAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDK+YFSPLGKFMDERD AIKE
Sbjct: 61  SLSFAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKIYFSPLGKFMDERDAAIKE 120

Query: 121 KLNSVKDTSEEVKQLDDQAAAVMRAARAEISAALTKMXXXXXXXXXXXXXXXXXXXXXXX 180
           KL+SVKDTSE VKQLD+QAAAVMRAARAEISAAL K XXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 KLSSVKDTSEGVKQLDEQAAAVMRAARAEISAALNKXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXENQKAETIKSLDAQIAALSDDIVKKVLPV 217
           XXXXXXX            AQIAALSD+IVKKVLPV
Sbjct: 181 XXXXXXXXXXXXXXXXXXXAQIAALSDEIVKKVLPV 216

[Close]
BLAST of CsaV3_2G032160 vs. TrEMBL
Match: tr|A0A067KBI4|A0A067KBI4_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_07152 PE=3 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.4e-46
Identity = 121/159 (76.10%), Postives = 131/159 (82.39%), Query Frame = 0 

Query: 1   MANVIMASSKPPSPPLSISNKT--PKFSIPK-TLTLIPQFLKKPQSISLSTSTLKSLSLF 60
           MA +IMASSKP  P  S    T  PK  IP+ +L +    + K Q  SLS+STLKSLSL 
Sbjct: 1   MAAMIMASSKPLIPLSSAIPTTTRPKIQIPQLSLPVKLPKVTKTQLASLSSSTLKSLSLL 60

Query: 61  AATSLSFAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKLYFSPLGKFMDERDTA 120
           AATS +FAPPSLAEEIEKAALFDFNLTLPIMM QFLLLMVGLDK+YFSPLGKFMDERD A
Sbjct: 61  AATSFTFAPPSLAEEIEKAALFDFNLTLPIMMVQFLLLMVGLDKIYFSPLGKFMDERDAA 120

Query: 121 IKEKLNSVKDTSEEVKQLDDQAAAVMRAARAEISAALTK 157
           IKEKLNSVKDTSEEVKQL++QAAAVMRAARAEISAAL K
Sbjct: 121 IKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALNK 159

[Close]
BLAST of CsaV3_2G032160 vs. TrEMBL
Match: tr|A0A2C9W5S7|A0A2C9W5S7_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G013900 PE=3 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 3.5e-45
Identity = 116/158 (73.42%), Postives = 127/158 (80.38%), Query Frame = 0 

Query: 1   MANVIMASSKPPSPPLSISNKTPKFSIPK-TLTLIPQFLKKPQSISLSTSTLKSLSLFAA 60
           MA  IMASSKP     S +   PK  IP+ +L +    + K Q  SLS+STLKSLSL AA
Sbjct: 1   MATAIMASSKPLISTTSTTTTRPKLHIPQISLPIKLPKINKTQLHSLSSSTLKSLSLIAA 60

Query: 61  TSLSFAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKLYFSPLGKFMDERDTAIK 120
           TS +FAPPSLAEEIEKAALFDF+LTLPIMM QFL+LMV LDKLYFSPLGKFMDERD AIK
Sbjct: 61  TSFTFAPPSLAEEIEKAALFDFDLTLPIMMVQFLILMVTLDKLYFSPLGKFMDERDAAIK 120

Query: 121 EKLNSVKDTSEEVKQLDDQAAAVMRAARAEISAALTKM 158
           EKL SVKDTS EVKQL++QAAAVMRAARAEISAAL KM
Sbjct: 121 EKLGSVKDTSAEVKQLEEQAAAVMRAARAEISAALNKM 158

[Close]
BLAST of CsaV3_2G032160 vs. TrEMBL
Match: tr|A0A1Q3D072|A0A1Q3D072_CEPFO (ATP-synt_B domain-containing protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_29137 PE=3 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 3.0e-44
Identity = 148/220 (67.27%), Postives = 172/220 (78.18%), Query Frame = 0 

Query: 1   MANVIMASSKPPSPP-LSISNKTPKFSIPKTLTLIPQFL--KKPQSISLS--TSTLKSLS 60
           MAN+IMASSKP  PP  S     P+   P+ L+ + + +   KPQ + LS  T+TL SLS
Sbjct: 255 MANMIMASSKPIIPPTFSFPQNKPR---PQILSFLQKNIIPTKPQLLLLSPTTTTLNSLS 314

Query: 61  LFAATSLSFAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKLYFSPLGKFMDERD 120
           L AATSL+ APP+LAEEIEKAALFDFNLTLPI+M +FL LM  LDK+Y++PLG FMDERD
Sbjct: 315 LIAATSLALAPPTLAEEIEKAALFDFNLTLPIIMLEFLFLMFALDKIYYTPLGNFMDERD 374

Query: 121 TAIKEKLNSVKDTSEEVKQLDDQAAAVMRAARAEISAALTKMXXXXXXXXXXXXXXXXXX 180
            AIKEKL+SVKDTS EVKQL++QA A++RAARAEI+AALTKM    XXXXXXXXXXXXXX
Sbjct: 375 AAIKEKLSSVKDTSGEVKQLEEQATAILRAARAEIAAALTKMKKETXXXXXXXXXXXXXX 434

Query: 181 XXXXXXXXXXXXENQKAETIKSLDAQIAALSDDIVKKVLP 216
           XXXXXXXXXXXX         +LD+QIAALS DIVKKVLP
Sbjct: 435 XXXXXXXXXXXXXXXXXXXXXALDSQIAALSQDIVKKVLP 471

The following BLAST results are available for this feature:
BLAST of CsaV3_2G032160 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004138722.19.0e-85100.00PREDICTED: ATP synthase subunit b', chloroplastic [Cucumis sativus] >KGN62960.1 ... [more]
XP_008445233.11.7e-7089.81PREDICTED: ATP synthase subunit b', chloroplastic [Cucumis melo][more]
XP_022951454.11.7e-6788.13ATP synthase subunit b', chloroplastic [Cucurbita moschata][more]
XP_023538440.15.0e-6787.67ATP synthase subunit b', chloroplastic [Cucurbita pepo subsp. pepo][more]
XP_023002493.18.5e-6788.13ATP synthase subunit b', chloroplastic [Cucurbita maxima][more]
BLAST of CsaV3_2G032160 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G32260.11.0e-3460.44ATPase, F0 complex, subunit B/B', bacterial/chloroplast[more]
BLAST of CsaV3_2G032160 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P31853|ATPX_SPIOL4.8e-2958.37ATP synthase subunit b', chloroplastic OS=Spinacia oleracea OX=3562 GN=ATPG PE=1... [more]
sp|A8J785|ATPX_CHLRE4.5e-1935.58ATP synthase subunit b', chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=A... [more]
sp|Q112Z3|ATPX_TRIEI1.0e-0745.07ATP synthase subunit b' OS=Trichodesmium erythraeum (strain IMS101) OX=203124 GN... [more]
sp|P48085|ATPX_CYAPA3.0e-0728.95ATP synthase B' chain, cyanelle OS=Cyanophora paradoxa OX=2762 GN=atpG PE=3 SV=1[more]
sp|P51245|ATPX_PORPU5.2e-0738.30ATP synthase subunit b', chloroplastic OS=Porphyra purpurea OX=2787 GN=atpG PE=3... [more]
BLAST of CsaV3_2G032160 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LM10|A0A0A0LM10_CUCSA6.0e-85100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G381850 PE=3 SV=1[more]
tr|A0A1S3BD20|A0A1S3BD20_CUCME1.1e-7089.81ATP synthase subunit b', chloroplastic OS=Cucumis melo OX=3656 GN=LOC103488320 P... [more]
tr|A0A067KBI4|A0A067KBI4_JATCU1.4e-4676.10Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_07152 PE=3 SV=1[more]
tr|A0A2C9W5S7|A0A2C9W5S7_MANES3.5e-4573.42Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G013900 PE=3 SV=... [more]
tr|A0A1Q3D072|A0A1Q3D072_CEPFO3.0e-4467.27ATP-synt_B domain-containing protein (Fragment) OS=Cephalotus follicularis OX=37... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0045263proton-transporting ATP synthase complex, coupling factor F(o)
Vocabulary: Molecular Function
TermDefinition
GO:0015078hydrogen ion transmembrane transporter activity
Vocabulary: Biological Process
TermDefinition
GO:0015986ATP synthesis coupled proton transport
Vocabulary: INTERPRO
TermDefinition
IPR034679ATP_synth_b'
IPR002146ATP_synth_b/b'su_bac/chlpt
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015986 ATP synthesis coupled proton transport
biological_process GO:0009735 response to cytokinin
cellular_component GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0015078 hydrogen ion transmembrane transporter activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G032160.1CsaV3_2G032160.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 118..145
NoneNo IPR availableCOILSCoilCoilcoord: 173..204
NoneNo IPR availablePANTHERPTHR33445FAMILY NOT NAMEDcoord: 57..215
IPR002146ATP synthase, F0 complex, subunit b/b', bacterial/chloroplastPFAMPF00430ATP-synt_Bcoord: 84..214
e-value: 6.8E-14
score: 52.0
IPR002146ATP synthase, F0 complex, subunit b/b', bacterial/chloroplastHAMAPMF_01398ATP_synth_b_bprimecoord: 79..216
score: 10.037
IPR034679ATP synthase, F0 complex, subunit b'HAMAPMF_01399ATP_synth_bprimecoord: 78..215
score: 19.764

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_2G032160CSPI02G23620Wild cucumber (PI 183967)cpicucB081
CsaV3_2G032160Cucsa.162520Cucumber (Gy14) v1cgycucB247
CsaV3_2G032160CmoCh12G002930Cucurbita moschata (Rifu)cmocucB0176
CsaV3_2G032160Cp4.1LG07g02970Cucurbita pepo (Zucchini)cpecucB1004
CsaV3_2G032160CsGy2G023380Cucumber (Gy14) v2cgybcucB065
CsaV3_2G032160Carg03933Silver-seed gourdcarcucB1015
CsaV3_2G032160Cla022333Watermelon (97103) v1cucwmB121
CsaV3_2G032160MELO3C011269Melon (DHL92) v3.5.1cucmeB124
CsaV3_2G032160ClCG08G013430Watermelon (Charleston Gray)cucwcgB173
CsaV3_2G032160Lsi08G012120Bottle gourd (USVL1VR-Ls)cuclsiB152
CsaV3_2G032160MELO3C011269.2Melon (DHL92) v3.6.1cucmedB118
CsaV3_2G032160Cla97C08G156800Watermelon (97103) v2cucwmbB160
CsaV3_2G032160Bhi04G000775Wax gourdcucwgoB170
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G032160Cucumber (Chinese Long) v3cuccucB065
CsaV3_2G032160Cucumber (Chinese Long) v3cuccucB080
CsaV3_2G032160Silver-seed gourdcarcucB0159
CsaV3_2G032160Silver-seed gourdcarcucB0665
CsaV3_2G032160Silver-seed gourdcarcucB0694
CsaV3_2G032160Cucumber (Gy14) v2cgybcucB066
CsaV3_2G032160Cucumber (Gy14) v2cgybcucB166
CsaV3_2G032160Cucumber (Gy14) v1cgycucB101
CsaV3_2G032160Cucurbita maxima (Rimu)cmacucB0016
CsaV3_2G032160Cucurbita maxima (Rimu)cmacucB0082
CsaV3_2G032160Cucurbita maxima (Rimu)cmacucB0192
CsaV3_2G032160Cucurbita maxima (Rimu)cmacucB0531
CsaV3_2G032160Cucurbita maxima (Rimu)cmacucB0535
CsaV3_2G032160Cucurbita maxima (Rimu)cmacucB0935
CsaV3_2G032160Cucurbita maxima (Rimu)cmacucB0937
CsaV3_2G032160Cucurbita moschata (Rifu)cmocucB0006
CsaV3_2G032160Cucurbita moschata (Rifu)cmocucB0071
CsaV3_2G032160Cucurbita moschata (Rifu)cmocucB0520
CsaV3_2G032160Cucurbita moschata (Rifu)cmocucB0925
CsaV3_2G032160Cucurbita moschata (Rifu)cmocucB0927
CsaV3_2G032160Cucurbita pepo (Zucchini)cpecucB0116
CsaV3_2G032160Cucurbita pepo (Zucchini)cpecucB0119
CsaV3_2G032160Cucurbita pepo (Zucchini)cpecucB0147
CsaV3_2G032160Cucurbita pepo (Zucchini)cpecucB0451
CsaV3_2G032160Cucurbita pepo (Zucchini)cpecucB0674
CsaV3_2G032160Cucurbita pepo (Zucchini)cpecucB0677
CsaV3_2G032160Cucurbita pepo (Zucchini)cpecucB0831
CsaV3_2G032160Cucurbita pepo (Zucchini)cpecucB0958
CsaV3_2G032160Wild cucumber (PI 183967)cpicucB083
CsaV3_2G032160Wild cucumber (PI 183967)cpicucB205
CsaV3_2G032160Bottle gourd (USVL1VR-Ls)cuclsiB135
CsaV3_2G032160Bottle gourd (USVL1VR-Ls)cuclsiB148
CsaV3_2G032160Melon (DHL92) v3.5.1cucmeB152
CsaV3_2G032160Watermelon (Charleston Gray)cucwcgB117
CsaV3_2G032160Watermelon (Charleston Gray)cucwcgB151
CsaV3_2G032160Watermelon (Charleston Gray)cucwcgB170
CsaV3_2G032160Watermelon (97103) v1cucwmB132
CsaV3_2G032160Watermelon (97103) v1cucwmB139
CsaV3_2G032160Watermelon (97103) v1cucwmB178
CsaV3_2G032160Watermelon (97103) v2cucwmbB113
CsaV3_2G032160Watermelon (97103) v2cucwmbB158