Lsi08G002520 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi08G002520
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_55
Location	chr08 : 5680461 .. 5680724 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGAGCAAATCATTTCCTAAGTACTCATCCTCAACCTCGGGCGAGTTCGGTTTCCAAACCCGATCCAGCTCGTACAATTTCAACGGCCCAACTGCAAAGACAACCGGGTTCTCGACCTCGGCCGATCCCGAGCTCCAAAGGAAGAGAAGAATTGCATCTTATAATGTTTTCAACATGGAAAACAAAGTCAAGTCTAGTGTAAAGAACAGCTTCAAGTGGATCAAAACTAAGTTTAGTGACATTCGCTATGGTTTGTGA

mRNA sequence

ATGGAGAAGAGCAAATCATTTCCTAAGTACTCATCCTCAACCTCGGGCGAGTTCGGTTTCCAAACCCGATCCAGCTCGTACAATTTCAACGGCCCAACTGCAAAGACAACCGGGTTCTCGACCTCGGCCGATCCCGAGCTCCAAAGGAAGAGAAGAATTGCATCTTATAATGTTTTCAACATGGAAAACAAAGTCAAGTCTAGTGTAAAGAACAGCTTCAAGTGGATCAAAACTAAGTTTAGTGACATTCGCTATGGTTTGTGA

Coding sequence (CDS)

ATGGAGAAGAGCAAATCATTTCCTAAGTACTCATCCTCAACCTCGGGCGAGTTCGGTTTCCAAACCCGATCCAGCTCGTACAATTTCAACGGCCCAACTGCAAAGACAACCGGGTTCTCGACCTCGGCCGATCCCGAGCTCCAAAGGAAGAGAAGAATTGCATCTTATAATGTTTTCAACATGGAAAACAAAGTCAAGTCTAGTGTAAAGAACAGCTTCAAGTGGATCAAAACTAAGTTTAGTGACATTCGCTATGGTTTGTGA

Protein sequence

MEKSKSFPKYSSSTSGEFGFQTRSSSYNFNGPTAKTTGFSTSADPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGL

Homology

[Close]

BLAST of Lsi08G002520 vs. TrEMBL
Match: A0A0A0K8Y3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G017090 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.2e-38
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 1


Query: 1  MEKSKSFPKYSSSTSGEFGFQTRSSSYNFNGPTAKTTGFSTSADPELQRKRRIASYNVFN 60
          MEKSKSFPKYSSSTSGEFGFQTRS+SYNFNGPTAK TGFSTSADPELQRKRRIASYNVFN
Sbjct: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
          MENKVKSSVKNSFKWIKTKFSDIRYGL
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 87

[Close]

BLAST of Lsi08G002520 vs. TrEMBL
Match: B9H7V5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s21760g PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.7e-29
Identity = 66/87 (75.86%), Postives = 79/87 (90.80%), Query Frame = 1


Query: 1  MEKSKSFPKYSSSTSGEFGFQTRSSSYNFNGPTAKTTGFSTSADPELQRKRRIASYNVFN 60
          MEKSKSFP+YSSS SGEFGF+ RS+SYNFNGP  K  GF+TS+DPEL+RK+RIASYNVF 
Sbjct: 1  MEKSKSFPQYSSSFSGEFGFEDRSNSYNFNGPCQKGNGFATSSDPELKRKKRIASYNVFT 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
          ME K+KS+V+NSFKWIK+KFSD+RYG+
Sbjct: 61 MEGKLKSNVRNSFKWIKSKFSDVRYGM 87

[Close]

BLAST of Lsi08G002520 vs. TrEMBL
Match: A0A061FIS9_THECC (Mediator of RNA polymerase II transcription subunit 8 OS=Theobroma cacao GN=TCM_047078 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.5e-28
Identity = 65/87 (74.71%), Postives = 78/87 (89.66%), Query Frame = 1


Query: 1  MEKSKSFPKYSSSTSGEFGFQTRSSSYNFNGPTAKTTGFSTSADPELQRKRRIASYNVFN 60
          MEKSKSFP+YSSS SGEF F+ RS+SYNFNGP +K+ GF+ S DPEL+RK+RIASYNVF 
Sbjct: 1  MEKSKSFPEYSSSFSGEFDFENRSNSYNFNGPCSKSNGFAASNDPELKRKKRIASYNVFT 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
          ME KVKSSV++SFKWIK+KFSD+RYG+
Sbjct: 61 MEGKVKSSVRSSFKWIKSKFSDVRYGM 87

[Close]

BLAST of Lsi08G002520 vs. TrEMBL
Match: W9R571_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023803 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.2e-27
Identity = 65/87 (74.71%), Postives = 75/87 (86.21%), Query Frame = 1


Query: 1  MEKSKSFPKYSSSTSGEFGFQTRSSSYNFNGPTAKTTGFSTSADPELQRKRRIASYNVFN 60
          ME S SFP+YSS+ S EFGFQ RS+SYNFNGP  K +GF+ S+DPELQRK+RIASYNVF 
Sbjct: 1  MENSNSFPEYSSAYSSEFGFQERSNSYNFNGPCQKGSGFAASSDPELQRKKRIASYNVFT 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
           E KVKSSV+NSFKWIK+KFSDIRYG+
Sbjct: 61 TEGKVKSSVRNSFKWIKSKFSDIRYGV 87

[Close]

BLAST of Lsi08G002520 vs. TrEMBL
Match: A9P994_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s06580g PE=2 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.8e-27
Identity = 63/87 (72.41%), Postives = 76/87 (87.36%), Query Frame = 1


Query: 1  MEKSKSFPKYSSSTSGEFGFQTRSSSYNFNGPTAKTTGFSTSADPELQRKRRIASYNVFN 60
          MEKSKSFP+YSS  SGEFGF+ +S+SYNFNGP  K  GF+TS+DPEL+RK+RIASYNVF 
Sbjct: 1  MEKSKSFPQYSSFFSGEFGFEDQSNSYNFNGPCQKGNGFATSSDPELKRKKRIASYNVFT 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
          +E K+KSS +NSFKWIK+KFSD RYG+
Sbjct: 61 VEGKLKSSARNSFKWIKSKFSDARYGM 87

[Close]

BLAST of Lsi08G002520 vs. TAIR10
Match: AT4G09890.1 (AT4G09890.1 Protein of unknown function (DUF3511))

HSP 1 Score: 85.9 bits (211), Expect = 1.4e-17
Identity = 52/93 (55.91%), Postives = 66/93 (70.97%), Query Frame = 1


Query: 1  MEKSKSFPKYSSSTS-GEFGF-QTRSSSYNFNGPTAKTTGFSTSADPELQRKRRIASYNV 60
          M+ SKS+ +YSSS S  EFG+ Q RS+SYNFNGP   T       DPE++RK+R+ASYN+
Sbjct: 2  MKGSKSYTEYSSSFSTDEFGYDQNRSNSYNFNGPCINT-------DPEMKRKKRVASYNL 61

Query: 61 FNMENKVKSSVKNSFKWIKTKFS----DIRYGL 88
          F  E K+KS++KNSFKWIK KFS     IRY +
Sbjct: 62 FATEEKLKSTLKNSFKWIKNKFSGDDNSIRYNV 87

[Close]

BLAST of Lsi08G002520 vs. TAIR10
Match: AT5G11970.1 (AT5G11970.1 Protein of unknown function (DUF3511))

HSP 1 Score: 58.9 bits (141), Expect = 1.8e-09
Identity = 23/43 (53.49%), Postives = 35/43 (81.40%), Query Frame = 1


Query: 44  DPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYG 87
           DPELQRK+R+ASY ++ +E KVK S +NSF+W+K +++ + YG
Sbjct: 61  DPELQRKKRVASYKMYGVEGKVKGSFRNSFRWLKQRYTQVVYG 103

[Close]

BLAST of Lsi08G002520 vs. TAIR10
Match: AT1G72720.1 (AT1G72720.1 Protein of unknown function (DUF3511))

HSP 1 Score: 53.5 bits (127), Expect = 7.4e-08
Identity = 40/100 (40.00%), Postives = 54/100 (54.00%), Query Frame = 1


Query: 2   EKSKSFP----------KYSSSTSGEFGFQT--RSSSYNFNGPT--AKTTGFSTSADPEL 61
           EKS+S P           YS+ST   +   T  R  S N +  +   K  GF    + E+
Sbjct: 27  EKSESEPTNQQPPVMMRSYSTSTYNAYQNPTIVRDDSNNKSKRSNKVKKKGFKGLCEAEI 86

Query: 62  QRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGL 88
           QRK+R+ASYNV+ +E +VK S+K SFKW K   S+  YGL
Sbjct: 87  QRKKRVASYNVYGVEGRVKGSMKKSFKWFKETCSNAVYGL 126

[Close]

BLAST of Lsi08G002520 vs. TAIR10
Match: AT3G05725.1 (AT3G05725.1 Protein of unknown function (DUF3511))

HSP 1 Score: 50.1 bits (118), Expect = 8.2e-07
Identity = 20/44 (45.45%), Postives = 34/44 (77.27%), Query Frame = 1


Query: 44  DPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGL 88
           DPE++RKRR+A Y +++ E K+K +++ S+KWIK + S I +G+
Sbjct: 81  DPEIKRKRRVAKYKLYSAEGKMKITLRKSYKWIKIQCSKIIHGI 124

[Close]

BLAST of Lsi08G002520 vs. TAIR10
Match: AT3G62640.1 (AT3G62640.1 Protein of unknown function (DUF3511))

HSP 1 Score: 48.9 bits (115), Expect = 1.8e-06
Identity = 31/77 (40.26%), Postives = 43/77 (55.84%), Query Frame = 1


Query: 20  FQTRSSSYNFN-------GPTAKTTGFSTS---ADPELQRKRRIASYNVFNMENKVKSSV 79
           + TR  S  F        G T+KT   +T     D E +RK+RIA+Y  + +E KVKS+V
Sbjct: 34  YSTRPDSPKFQPSIPPPPGSTSKTRTTATPWRLIDAETKRKKRIATYKTYALEGKVKSTV 93

Query: 80  KNSFKWIKTKFSDIRYG 87
           K  F WIK ++S I +G
Sbjct: 94  KKGFHWIKDRYSHIIHG 110

[Close]

BLAST of Lsi08G002520 vs. NCBI nr
Match: gi|700190689|gb|KGN45893.1| (hypothetical protein Csa_6G017090 [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 1.7e-38
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 1


Query: 1  MEKSKSFPKYSSSTSGEFGFQTRSSSYNFNGPTAKTTGFSTSADPELQRKRRIASYNVFN 60
          MEKSKSFPKYSSSTSGEFGFQTRS+SYNFNGPTAK TGFSTSADPELQRKRRIASYNVFN
Sbjct: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
          MENKVKSSVKNSFKWIKTKFSDIRYGL
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 87

[Close]

BLAST of Lsi08G002520 vs. NCBI nr
Match: gi|224082498|ref|XP_002306717.1| (hypothetical protein POPTR_0005s21760g [Populus trichocarpa])

HSP 1 Score: 136.3 bits (342), Expect = 2.5e-29
Identity = 66/87 (75.86%), Postives = 79/87 (90.80%), Query Frame = 1


Query: 1  MEKSKSFPKYSSSTSGEFGFQTRSSSYNFNGPTAKTTGFSTSADPELQRKRRIASYNVFN 60
          MEKSKSFP+YSSS SGEFGF+ RS+SYNFNGP  K  GF+TS+DPEL+RK+RIASYNVF 
Sbjct: 1  MEKSKSFPQYSSSFSGEFGFEDRSNSYNFNGPCQKGNGFATSSDPELKRKKRIASYNVFT 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
          ME K+KS+V+NSFKWIK+KFSD+RYG+
Sbjct: 61 MEGKLKSNVRNSFKWIKSKFSDVRYGM 87

[Close]

BLAST of Lsi08G002520 vs. NCBI nr
Match: gi|590601066|ref|XP_007019583.1| (Mediator of RNA polymerase II transcription subunit 8 [Theobroma cacao])

HSP 1 Score: 133.3 bits (334), Expect = 2.1e-28
Identity = 65/87 (74.71%), Postives = 78/87 (89.66%), Query Frame = 1


Query: 1  MEKSKSFPKYSSSTSGEFGFQTRSSSYNFNGPTAKTTGFSTSADPELQRKRRIASYNVFN 60
          MEKSKSFP+YSSS SGEF F+ RS+SYNFNGP +K+ GF+ S DPEL+RK+RIASYNVF 
Sbjct: 1  MEKSKSFPEYSSSFSGEFDFENRSNSYNFNGPCSKSNGFAASNDPELKRKKRIASYNVFT 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
          ME KVKSSV++SFKWIK+KFSD+RYG+
Sbjct: 61 MEGKVKSSVRSSFKWIKSKFSDVRYGM 87

[Close]

BLAST of Lsi08G002520 vs. NCBI nr
Match: gi|703103187|ref|XP_010097663.1| (hypothetical protein L484_023803 [Morus notabilis])

HSP 1 Score: 130.2 bits (326), Expect = 1.8e-27
Identity = 65/87 (74.71%), Postives = 75/87 (86.21%), Query Frame = 1


Query: 1  MEKSKSFPKYSSSTSGEFGFQTRSSSYNFNGPTAKTTGFSTSADPELQRKRRIASYNVFN 60
          ME S SFP+YSS+ S EFGFQ RS+SYNFNGP  K +GF+ S+DPELQRK+RIASYNVF 
Sbjct: 1  MENSNSFPEYSSAYSSEFGFQERSNSYNFNGPCQKGSGFAASSDPELQRKKRIASYNVFT 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
           E KVKSSV+NSFKWIK+KFSDIRYG+
Sbjct: 61 TEGKVKSSVRNSFKWIKSKFSDIRYGV 87

[Close]

BLAST of Lsi08G002520 vs. NCBI nr
Match: gi|567883903|ref|XP_006434510.1| (hypothetical protein CICLE_v10003573mg [Citrus clementina])

HSP 1 Score: 129.0 bits (323), Expect = 3.9e-27
Identity = 63/86 (73.26%), Postives = 77/86 (89.53%), Query Frame = 1


Query: 1  MEKSKSFPKYSSSTSGEFGFQTRSSSYNFNGPTAKTTGFSTSADPELQRKRRIASYNVFN 60
          MEKSKSFP+YSSS SGEF F  +S+SY FNGP++K  GF+TS+DPE++RK+RIASYNVF 
Sbjct: 1  MEKSKSFPEYSSSFSGEFDFDNQSNSYIFNGPSSKGNGFATSSDPEIKRKKRIASYNVFT 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYG 87
          +ENK+KSSV+NSFKWIK KFSD+RYG
Sbjct: 61 VENKLKSSVRNSFKWIKGKFSDVRYG 86

The following BLAST results are available for this feature:

BLAST of Lsi08G002520 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi08G002520 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8Y3_CUCSA	1.2e-38	97.70	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G017090 PE=4 SV=1	[more]
B9H7V5_POPTR	1.7e-29	75.86	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s21760g PE=4 SV=1	[more]
A0A061FIS9_THECC	1.5e-28	74.71	Mediator of RNA polymerase II transcription subunit 8 OS=Theobroma cacao GN=TCM_...	[more]
W9R571_9ROSA	1.2e-27	74.71	Uncharacterized protein OS=Morus notabilis GN=L484_023803 PE=4 SV=1	[more]
A9P994_POPTR	2.8e-27	72.41	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s06580g PE=2 SV=1	[more]

BLAST of Lsi08G002520 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G09890.1	1.4e-17	55.91	Protein of unknown function (DUF3511)	[more]
AT5G11970.1	1.8e-09	53.49	Protein of unknown function (DUF3511)	[more]
AT1G72720.1	7.4e-08	40.00	Protein of unknown function (DUF3511)	[more]
AT3G05725.1	8.2e-07	45.45	Protein of unknown function (DUF3511)	[more]
AT3G62640.1	1.8e-06	40.26	Protein of unknown function (DUF3511)	[more]

BLAST of Lsi08G002520 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700190689\|gb\|KGN45893.1\|	1.7e-38	97.70	hypothetical protein Csa_6G017090 [Cucumis sativus]	[more]
gi\|224082498\|ref\|XP_002306717.1\|	2.5e-29	75.86	hypothetical protein POPTR_0005s21760g [Populus trichocarpa]	[more]
gi\|590601066\|ref\|XP_007019583.1\|	2.1e-28	74.71	Mediator of RNA polymerase II transcription subunit 8 [Theobroma cacao]	[more]
gi\|703103187\|ref\|XP_010097663.1\|	1.8e-27	74.71	hypothetical protein L484_023803 [Morus notabilis]	[more]
gi\|567883903\|ref\|XP_006434510.1\|	3.9e-27	73.26	hypothetical protein CICLE_v10003573mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021899	DUF3511

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G002520.1	Lsi08G002520.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021899	Protein of unknown function DUF3511	PFAM	PF12023	DUF3511	coord: 43..86 score: 2.3
None	No IPR available	PANTHER	PTHR33193	FAMILY NOT NAMED	coord: 1..87 score: 2.5
None	No IPR available	PANTHER	PTHR33193:SF9	SUBFAMILY NOT NAMED	coord: 1..87 score: 2.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi08G002520	Csa6G017090	Cucumber (Chinese Long) v2	culsiB471
Lsi08G002520	Cucsa.365800	Cucumber (Gy14) v1	cgylsiB591
Lsi08G002520	CmaCh09G011970	Cucurbita maxima (Rimu)	cmalsiB043
Lsi08G002520	CmoCh01G009630	Cucurbita moschata (Rifu)	cmolsiB440
Lsi08G002520	CmoCh09G012120	Cucurbita moschata (Rifu)	cmolsiB024
Lsi08G002520	Cla003685	Watermelon (97103) v1	lsiwmB472
Lsi08G002520	MELO3C024975	Melon (DHL92) v3.5.1	lsimeB471
Lsi08G002520	ClCG08G003150	Watermelon (Charleston Gray)	lsiwcgB445
Lsi08G002520	MELO3C024975.2	Melon (DHL92) v3.6.1	lsimedB495
Lsi08G002520	Cla97C08G146860	Watermelon (97103) v2	lsiwmbB450
Lsi08G002520	Cp4.1LG06g09680	Cucurbita pepo (Zucchini)	cpelsiB649
Lsi08G002520	Cp4.1LG02g09300	Cucurbita pepo (Zucchini)	cpelsiB479
Lsi08G002520	CsaV3_6G002840	Cucumber (Chinese Long) v3	cuclsiB501

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi08G002520	Cucurbita maxima (Rimu)	cmalsiB453
Lsi08G002520	Wild cucumber (PI 183967)	cpilsiB479
Lsi08G002520	Watermelon (Charleston Gray)	lsiwcgB440
Lsi08G002520	Watermelon (97103) v1	lsiwmB470
Lsi08G002520	Cucumber (Gy14) v2	cgyblsiB438
Lsi08G002520	Watermelon (97103) v2	lsiwmbB445
Lsi08G002520	Wax gourd	lsiwgoB604