CmoCh01G009630 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G009630
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	DUF3511 domain protein
Location	Cmo_Chr01 : 6099615 .. 6099878 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGAGCAAAACATTCCCCAAGTACTCGTCCTCCACTTCGGGCGAGTTCGGTTTCGAAACCCAGTCTAACTCGTACAATTTCAACGGCTCGGCTGAGAAGGGGAGCGGATTTTCGTCCTCTGCCGATCCCGAGCTTCAAAGGAAGAGAAGGATCGCCTCTTATAATGTTTTCAATATGGAAAACAAAGTGAAGTCCAGTGTAAAGAACAGCTTCAAATGGATCAAAACCAAGTTTAGTGACCGTCGCTACGGTTTGTGA

mRNA sequence

ATGGAGAAGAGCAAAACATTCCCCAAGTACTCGTCCTCCACTTCGGGCGAGTTCGGTTTCGAAACCCAGTCTAACTCGTACAATTTCAACGGCTCGGCTGAGAAGGGGAGCGGATTTTCGTCCTCTGCCGATCCCGAGCTTCAAAGGAAGAGAAGGATCGCCTCTTATAATGTTTTCAATATGGAAAACAAAGTGAAGTCCAGTGTAAAGAACAGCTTCAAATGGATCAAAACCAAGTTTAGTGACCGTCGCTACGGTTTGTGA

Coding sequence (CDS)

ATGGAGAAGAGCAAAACATTCCCCAAGTACTCGTCCTCCACTTCGGGCGAGTTCGGTTTCGAAACCCAGTCTAACTCGTACAATTTCAACGGCTCGGCTGAGAAGGGGAGCGGATTTTCGTCCTCTGCCGATCCCGAGCTTCAAAGGAAGAGAAGGATCGCCTCTTATAATGTTTTCAATATGGAAAACAAAGTGAAGTCCAGTGTAAAGAACAGCTTCAAATGGATCAAAACCAAGTTTAGTGACCGTCGCTACGGTTTGTGA

Homology

[Close]

BLAST of CmoCh01G009630 vs. TrEMBL
Match: A0A0A0K8Y3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G017090 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 8.8e-34
Identity = 77/87 (88.51%), Postives = 82/87 (94.25%), Query Frame = 1


Query: 1  MEKSKTFPKYSSSTSGEFGFETQSNSYNFNGSAEKGSGFSSSADPELQRKRRIASYNVFN 60
          MEKSK+FPKYSSSTSGEFGF+T+SNSYNFNG   K +GFS+SADPELQRKRRIASYNVFN
Sbjct: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDRRYGL 88
          MENKVKSSVKNSFKWIKTKFSD RYGL
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 87

[Close]

BLAST of CmoCh01G009630 vs. TrEMBL
Match: B9H7V5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s21760g PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.5e-28
Identity = 65/87 (74.71%), Postives = 80/87 (91.95%), Query Frame = 1


Query: 1  MEKSKTFPKYSSSTSGEFGFETQSNSYNFNGSAEKGSGFSSSADPELQRKRRIASYNVFN 60
          MEKSK+FP+YSSS SGEFGFE +SNSYNFNG  +KG+GF++S+DPEL+RK+RIASYNVF 
Sbjct: 1  MEKSKSFPQYSSSFSGEFGFEDRSNSYNFNGPCQKGNGFATSSDPELKRKKRIASYNVFT 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDRRYGL 88
          ME K+KS+V+NSFKWIK+KFSD RYG+
Sbjct: 61 MEGKLKSNVRNSFKWIKSKFSDVRYGM 87

[Close]

BLAST of CmoCh01G009630 vs. TrEMBL
Match: A9P994_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s06580g PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 5.5e-28
Identity = 64/87 (73.56%), Postives = 78/87 (89.66%), Query Frame = 1


Query: 1  MEKSKTFPKYSSSTSGEFGFETQSNSYNFNGSAEKGSGFSSSADPELQRKRRIASYNVFN 60
          MEKSK+FP+YSS  SGEFGFE QSNSYNFNG  +KG+GF++S+DPEL+RK+RIASYNVF 
Sbjct: 1  MEKSKSFPQYSSFFSGEFGFEDQSNSYNFNGPCQKGNGFATSSDPELKRKKRIASYNVFT 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDRRYGL 88
          +E K+KSS +NSFKWIK+KFSD RYG+
Sbjct: 61 VEGKLKSSARNSFKWIKSKFSDARYGM 87

[Close]

BLAST of CmoCh01G009630 vs. TrEMBL
Match: W9R571_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023803 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.0e-26
Identity = 63/87 (72.41%), Postives = 76/87 (87.36%), Query Frame = 1


Query: 1  MEKSKTFPKYSSSTSGEFGFETQSNSYNFNGSAEKGSGFSSSADPELQRKRRIASYNVFN 60
          ME S +FP+YSS+ S EFGF+ +SNSYNFNG  +KGSGF++S+DPELQRK+RIASYNVF 
Sbjct: 1  MENSNSFPEYSSAYSSEFGFQERSNSYNFNGPCQKGSGFAASSDPELQRKKRIASYNVFT 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDRRYGL 88
           E KVKSSV+NSFKWIK+KFSD RYG+
Sbjct: 61 TEGKVKSSVRNSFKWIKSKFSDIRYGV 87

[Close]

BLAST of CmoCh01G009630 vs. TrEMBL
Match: A0A061FIS9_THECC (Mediator of RNA polymerase II transcription subunit 8 OS=Theobroma cacao GN=TCM_047078 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.0e-26
Identity = 64/87 (73.56%), Postives = 76/87 (87.36%), Query Frame = 1


Query: 1  MEKSKTFPKYSSSTSGEFGFETQSNSYNFNGSAEKGSGFSSSADPELQRKRRIASYNVFN 60
          MEKSK+FP+YSSS SGEF FE +SNSYNFNG   K +GF++S DPEL+RK+RIASYNVF 
Sbjct: 1  MEKSKSFPEYSSSFSGEFDFENRSNSYNFNGPCSKSNGFAASNDPELKRKKRIASYNVFT 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDRRYGL 88
          ME KVKSSV++SFKWIK+KFSD RYG+
Sbjct: 61 MEGKVKSSVRSSFKWIKSKFSDVRYGM 87

[Close]

BLAST of CmoCh01G009630 vs. TAIR10
Match: AT4G09890.1 (AT4G09890.1 Protein of unknown function (DUF3511))

HSP 1 Score: 77.4 bits (189), Expect = 4.8e-15
Identity = 45/83 (54.22%), Postives = 61/83 (73.49%), Query Frame = 1


Query: 1  MEKSKTFPKYSSSTS-GEFGFE-TQSNSYNFNGSAEKGSGFSSSADPELQRKRRIASYNV 60
          M+ SK++ +YSSS S  EFG++  +SNSYNFNG          + DPE++RK+R+ASYN+
Sbjct: 2  MKGSKSYTEYSSSFSTDEFGYDQNRSNSYNFNGPC-------INTDPEMKRKKRVASYNL 61

Query: 61 FNMENKVKSSVKNSFKWIKTKFS 82
          F  E K+KS++KNSFKWIK KFS
Sbjct: 62 FATEEKLKSTLKNSFKWIKNKFS 77

[Close]

BLAST of CmoCh01G009630 vs. TAIR10
Match: AT1G72720.1 (AT1G72720.1 Protein of unknown function (DUF3511))

HSP 1 Score: 56.2 bits (134), Expect = 1.1e-08
Identity = 34/82 (41.46%), Postives = 48/82 (58.54%), Query Frame = 1


Query: 10  YSSSTSGEFGFET----QSNSYNFNGSAEKGSGFSSSADPELQRKRRIASYNVFNMENKV 69
           YS+ST   +   T     SN+ +   +  K  GF    + E+QRK+R+ASYNV+ +E +V
Sbjct: 45  YSTSTYNAYQNPTIVRDDSNNKSKRSNKVKKKGFKGLCEAEIQRKKRVASYNVYGVEGRV 104

Query: 70  KSSVKNSFKWIKTKFSDRRYGL 88
           K S+K SFKW K   S+  YGL
Sbjct: 105 KGSMKKSFKWFKETCSNAVYGL 126

[Close]

BLAST of CmoCh01G009630 vs. TAIR10
Match: AT5G11970.1 (AT5G11970.1 Protein of unknown function (DUF3511))

HSP 1 Score: 51.2 bits (121), Expect = 3.7e-07
Identity = 32/85 (37.65%), Postives = 50/85 (58.82%), Query Frame = 1


Query: 10  YSSSTSGEF-----GFETQSNSYNFNGSAEKGSGFSSS---ADPELQRKRRIASYNVFNM 69
           Y  +  G+F      + T+ N+  ++   EK    S S    DPELQRK+R+ASY ++ +
Sbjct: 20  YHGNQGGDFRSYSASYGTRENNI-YDVKKEKSIARSKSWGITDPELQRKKRVASYKMYGV 79

Query: 70  ENKVKSSVKNSFKWIKTKFSDRRYG 87
           E KVK S +NSF+W+K +++   YG
Sbjct: 80  EGKVKGSFRNSFRWLKQRYTQVVYG 103

[Close]

BLAST of CmoCh01G009630 vs. TAIR10
Match: AT2G19460.1 (AT2G19460.1 Protein of unknown function (DUF3511))

HSP 1 Score: 49.3 bits (116), Expect = 1.4e-06
Identity = 25/50 (50.00%), Postives = 34/50 (68.00%), Query Frame = 1


Query: 34  EKGSGFSSSA----DPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTK 80
           +KG   SSS+    DP+LQRK+R+ SY  + +E K+K S + SFKWIK K
Sbjct: 61  KKGRSSSSSSWGFVDPDLQRKKRVVSYRAYTVEGKLKGSFRKSFKWIKDK 110

[Close]

BLAST of CmoCh01G009630 vs. TAIR10
Match: AT2G47480.1 (AT2G47480.1 Protein of unknown function (DUF3511))

HSP 1 Score: 48.1 bits (113), Expect = 3.1e-06
Identity = 20/37 (54.05%), Postives = 29/37 (78.38%), Query Frame = 1


Query: 43  ADPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTK 80
           +D E++RK+RIA Y  + +E KVKS++KN F+WIK K
Sbjct: 66  SDAEMKRKKRIARYKAYTVEGKVKSTLKNGFRWIKNK 102

[Close]

BLAST of CmoCh01G009630 vs. NCBI nr
Match: gi|700190689|gb|KGN45893.1| (hypothetical protein Csa_6G017090 [Cucumis sativus])

HSP 1 Score: 150.6 bits (379), Expect = 1.3e-33
Identity = 77/87 (88.51%), Postives = 82/87 (94.25%), Query Frame = 1


Query: 1  MEKSKTFPKYSSSTSGEFGFETQSNSYNFNGSAEKGSGFSSSADPELQRKRRIASYNVFN 60
          MEKSK+FPKYSSSTSGEFGF+T+SNSYNFNG   K +GFS+SADPELQRKRRIASYNVFN
Sbjct: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDRRYGL 88
          MENKVKSSVKNSFKWIKTKFSD RYGL
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 87

[Close]

BLAST of CmoCh01G009630 vs. NCBI nr
Match: gi|224082498|ref|XP_002306717.1| (hypothetical protein POPTR_0005s21760g [Populus trichocarpa])

HSP 1 Score: 133.3 bits (334), Expect = 2.1e-28
Identity = 65/87 (74.71%), Postives = 80/87 (91.95%), Query Frame = 1


Query: 1  MEKSKTFPKYSSSTSGEFGFETQSNSYNFNGSAEKGSGFSSSADPELQRKRRIASYNVFN 60
          MEKSK+FP+YSSS SGEFGFE +SNSYNFNG  +KG+GF++S+DPEL+RK+RIASYNVF 
Sbjct: 1  MEKSKSFPQYSSSFSGEFGFEDRSNSYNFNGPCQKGNGFATSSDPELKRKKRIASYNVFT 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDRRYGL 88
          ME K+KS+V+NSFKWIK+KFSD RYG+
Sbjct: 61 MEGKLKSNVRNSFKWIKSKFSDVRYGM 87

[Close]

BLAST of CmoCh01G009630 vs. NCBI nr
Match: gi|224066609|ref|XP_002302161.1| (hypothetical protein POPTR_0002s06580g [Populus trichocarpa])

HSP 1 Score: 131.3 bits (329), Expect = 8.0e-28
Identity = 64/87 (73.56%), Postives = 78/87 (89.66%), Query Frame = 1


Query: 1  MEKSKTFPKYSSSTSGEFGFETQSNSYNFNGSAEKGSGFSSSADPELQRKRRIASYNVFN 60
          MEKSK+FP+YSS  SGEFGFE QSNSYNFNG  +KG+GF++S+DPEL+RK+RIASYNVF 
Sbjct: 1  MEKSKSFPQYSSFFSGEFGFEDQSNSYNFNGPCQKGNGFATSSDPELKRKKRIASYNVFT 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDRRYGL 88
          +E K+KSS +NSFKWIK+KFSD RYG+
Sbjct: 61 VEGKLKSSARNSFKWIKSKFSDARYGM 87

[Close]

BLAST of CmoCh01G009630 vs. NCBI nr
Match: gi|703103187|ref|XP_010097663.1| (hypothetical protein L484_023803 [Morus notabilis])

HSP 1 Score: 127.1 bits (318), Expect = 1.5e-26
Identity = 63/87 (72.41%), Postives = 76/87 (87.36%), Query Frame = 1


Query: 1  MEKSKTFPKYSSSTSGEFGFETQSNSYNFNGSAEKGSGFSSSADPELQRKRRIASYNVFN 60
          ME S +FP+YSS+ S EFGF+ +SNSYNFNG  +KGSGF++S+DPELQRK+RIASYNVF 
Sbjct: 1  MENSNSFPEYSSAYSSEFGFQERSNSYNFNGPCQKGSGFAASSDPELQRKKRIASYNVFT 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDRRYGL 88
           E KVKSSV+NSFKWIK+KFSD RYG+
Sbjct: 61 TEGKVKSSVRNSFKWIKSKFSDIRYGV 87

[Close]

BLAST of CmoCh01G009630 vs. NCBI nr
Match: gi|590601066|ref|XP_007019583.1| (Mediator of RNA polymerase II transcription subunit 8 [Theobroma cacao])

HSP 1 Score: 127.1 bits (318), Expect = 1.5e-26
Identity = 64/87 (73.56%), Postives = 76/87 (87.36%), Query Frame = 1


Query: 1  MEKSKTFPKYSSSTSGEFGFETQSNSYNFNGSAEKGSGFSSSADPELQRKRRIASYNVFN 60
          MEKSK+FP+YSSS SGEF FE +SNSYNFNG   K +GF++S DPEL+RK+RIASYNVF 
Sbjct: 1  MEKSKSFPEYSSSFSGEFDFENRSNSYNFNGPCSKSNGFAASNDPELKRKKRIASYNVFT 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDRRYGL 88
          ME KVKSSV++SFKWIK+KFSD RYG+
Sbjct: 61 MEGKVKSSVRSSFKWIKSKFSDVRYGM 87

The following BLAST results are available for this feature:

BLAST of CmoCh01G009630 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh01G009630 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8Y3_CUCSA	8.8e-34	88.51	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G017090 PE=4 SV=1	[more]
B9H7V5_POPTR	1.5e-28	74.71	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s21760g PE=4 SV=1	[more]
A9P994_POPTR	5.5e-28	73.56	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s06580g PE=2 SV=1	[more]
W9R571_9ROSA	1.0e-26	72.41	Uncharacterized protein OS=Morus notabilis GN=L484_023803 PE=4 SV=1	[more]
A0A061FIS9_THECC	1.0e-26	73.56	Mediator of RNA polymerase II transcription subunit 8 OS=Theobroma cacao GN=TCM_...	[more]

BLAST of CmoCh01G009630 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G09890.1	4.8e-15	54.22	Protein of unknown function (DUF3511)	[more]
AT1G72720.1	1.1e-08	41.46	Protein of unknown function (DUF3511)	[more]
AT5G11970.1	3.7e-07	37.65	Protein of unknown function (DUF3511)	[more]
AT2G19460.1	1.4e-06	50.00	Protein of unknown function (DUF3511)	[more]
AT2G47480.1	3.1e-06	54.05	Protein of unknown function (DUF3511)	[more]

BLAST of CmoCh01G009630 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700190689\|gb\|KGN45893.1\|	1.3e-33	88.51	hypothetical protein Csa_6G017090 [Cucumis sativus]	[more]
gi\|224082498\|ref\|XP_002306717.1\|	2.1e-28	74.71	hypothetical protein POPTR_0005s21760g [Populus trichocarpa]	[more]
gi\|224066609\|ref\|XP_002302161.1\|	8.0e-28	73.56	hypothetical protein POPTR_0002s06580g [Populus trichocarpa]	[more]
gi\|703103187\|ref\|XP_010097663.1\|	1.5e-26	72.41	hypothetical protein L484_023803 [Morus notabilis]	[more]
gi\|590601066\|ref\|XP_007019583.1\|	1.5e-26	73.56	Mediator of RNA polymerase II transcription subunit 8 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021899	DUF3511

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G009630.1	CmoCh01G009630.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021899	Protein of unknown function DUF3511	PFAM	PF12023	DUF3511	coord: 43..86 score: 5.9
None	No IPR available	PANTHER	PTHR33193	FAMILY NOT NAMED	coord: 1..87 score: 1.0
None	No IPR available	PANTHER	PTHR33193:SF9	SUBFAMILY NOT NAMED	coord: 1..87 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh01G009630	Cucsa.365800	Cucumber (Gy14) v1	cgycmoB1003
CmoCh01G009630	Csa6G017090	Cucumber (Chinese Long) v2	cmocuB473
CmoCh01G009630	MELO3C024975	Melon (DHL92) v3.5.1	cmomeB401
CmoCh01G009630	Lsi08G002520	Bottle gourd (USVL1VR-Ls)	cmolsiB440
CmoCh01G009630	Cp4.1LG06g09680	Cucurbita pepo (Zucchini)	cmocpeB464
CmoCh01G009630	Cp4.1LG02g09300	Cucurbita pepo (Zucchini)	cmocpeB448
CmoCh01G009630	MELO3C024975.2	Melon (DHL92) v3.6.1	cmomedB462
CmoCh01G009630	CsaV3_6G002840	Cucumber (Chinese Long) v3	cmocucB0566
CmoCh01G009630	Cla97C08G146860	Watermelon (97103) v2	cmowmbB484

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh01G009630	Bottle gourd (USVL1VR-Ls)	cmolsiB397
CmoCh01G009630	Watermelon (97103) v2	cmowmbB498
CmoCh01G009630	Wax gourd	cmowgoB0608
CmoCh01G009630	Wax gourd	cmowgoB0621
CmoCh01G009630	Cucurbita maxima (Rimu)	cmacmoB468
CmoCh01G009630	Cucurbita maxima (Rimu)	cmacmoB471
CmoCh01G009630	Watermelon (Charleston Gray)	cmowcgB379
CmoCh01G009630	Watermelon (97103) v1	cmowmB405