Cucsa.365800 (gene) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGGTGAGAAGATCAATTTGTTGAAGAAACTAAGGCCAAGTTCTAGGTCATGGAGAAGAGCAAATCATTCCCCAAGTACTCCTCCTCAACCTCGGGTGAGTTCGGTTTCCAAACTCGATCTAACTCTTACAATTTCAACGGTCCGACTGCGAAAGCAACCGGGTTCTCGACCTCGGCCGATCCCGAACTCCAAAGAAAGAGAAGGATTGCGTCTTATAATGTTTTCAACATGGAAAACAAAGTCAAGTCTAGTGTAAAGAACAGCTTCAAATGGATCAAAACTAAATTTAGTGACATTCGCTATGGTTTGTGAGTTTCCtCTTTTtCTTTTtCTTTTTTTtCTTTTTtGAACATTGTGTAAACAAGTTTGGCATTTTGATCCGTCTTTTCAAGACTTGGAACCAAATTCAAGATATAATTAAAGAGTTTGGAAGTTGTGTGTGTTTTTGGCTCTGGCTTTATTTTGTTTCTCCATGCAAATATATAAGCTTTTTTTtCCCAATATATATACAAGATCATTTACCTCTCCTCTTAGTTTTGTTTTGGCTGTTCTTTTCTTTTTTAATTCCCATTTTCATTGTGTATTTAAGTTGAATTTAAAAAATCCACT TGGTGAGAAGATCAATTTGTTGAAGAAACTAAGGCCAAGTTCTAGGTCATGGAGAAGAGCAAATCATTCCCCAAGTACTCCTCCTCAACCTCGGGTGAGTTCGGTTTCCAAACTCGATCTAACTCTTACAATTTCAACGGTCCGACTGCGAAAGCAACCGGGTTCTCGACCTCGGCCGATCCCGAACTCCAAAGAAAGAGAAGGATTGCGTCTTATAATGTTTTCAACATGGAAAACAAAGTCAAGTCTAGTGTAAAGAACAGCTTCAAATGGATCAAAACTAAATTTAGTGACATTCGCTATGGTTTGTGAGTTTCCTCtttttctttttcttttttttcttttttGAACATTGTGTAAACAAGTTTGGCATTTTGATCCGTCTTTTCAAGACTTGGAACCAAATTCAAGATATAATTAAAGAGTTTGGAAGTTGTGTGTGTTTTTGGCTCTGGCTTTATTTTGTTTCTCCATGCAAATATATAAGCTTTTTTTTCCCAATATATATACAAGATCATTTACCTCTCCTCTTAGTTTTGTTTTGGCTGTTCTTTTCTTTTTTAATTCCCATTTTCATTGTGTATTTAAGTTGAATTTAAAAAATCCACT ATGGAGAAGAGCAAATCATTCCCCAAGTACTCCTCCTCAACCTCGGGTGAGTTCGGTTTCCAAACTCGATCTAACTCTTACAATTTCAACGGTCCGACTGCGAAAGCAACCGGGTTCTCGACCTCGGCCGATCCCGAACTCCAAAGAAAGAGAAGGATTGCGTCTTATAATGTTTTCAACATGGAAAACAAAGTCAAGTCTAGTGTAAAGAACAGCTTCAAATGGATCAAAACTAAATTTAGTGACATTCGCTATGGTTTGTGA MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGL*
BLAST of Cucsa.365800 vs. TrEMBL
Match: A0A0A0K8Y3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G017090 PE=4 SV=1) HSP 1 Score: 177.9 bits (450), Expect = 5.2e-42 Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1
BLAST of Cucsa.365800 vs. TrEMBL
Match: B9H7V5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s21760g PE=4 SV=1) HSP 1 Score: 146.7 bits (369), Expect = 1.3e-32 Identity = 67/87 (77.01%), Postives = 79/87 (90.80%), Query Frame = 1
BLAST of Cucsa.365800 vs. TrEMBL
Match: A0A061FIS9_THECC (Mediator of RNA polymerase II transcription subunit 8 OS=Theobroma cacao GN=TCM_047078 PE=4 SV=1) HSP 1 Score: 142.9 bits (359), Expect = 1.9e-31 Identity = 66/87 (75.86%), Postives = 78/87 (89.66%), Query Frame = 1
BLAST of Cucsa.365800 vs. TrEMBL
Match: W9R571_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023803 PE=4 SV=1) HSP 1 Score: 140.6 bits (353), Expect = 9.2e-31 Identity = 66/87 (75.86%), Postives = 75/87 (86.21%), Query Frame = 1
BLAST of Cucsa.365800 vs. TrEMBL
Match: V4T8F4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003573mg PE=4 SV=1) HSP 1 Score: 139.4 bits (350), Expect = 2.1e-30 Identity = 64/86 (74.42%), Postives = 77/86 (89.53%), Query Frame = 1
BLAST of Cucsa.365800 vs. TAIR10
Match: AT4G09890.1 (AT4G09890.1 Protein of unknown function (DUF3511)) HSP 1 Score: 93.2 bits (230), Expect = 8.6e-20 Identity = 52/93 (55.91%), Postives = 66/93 (70.97%), Query Frame = 1
BLAST of Cucsa.365800 vs. TAIR10
Match: AT1G72720.1 (AT1G72720.1 Protein of unknown function (DUF3511)) HSP 1 Score: 63.5 bits (153), Expect = 7.3e-11 Identity = 39/100 (39.00%), Postives = 53/100 (53.00%), Query Frame = 1
BLAST of Cucsa.365800 vs. TAIR10
Match: AT5G11970.1 (AT5G11970.1 Protein of unknown function (DUF3511)) HSP 1 Score: 61.2 bits (147), Expect = 3.6e-10 Identity = 32/85 (37.65%), Postives = 51/85 (60.00%), Query Frame = 1
BLAST of Cucsa.365800 vs. TAIR10
Match: AT3G62640.1 (AT3G62640.1 Protein of unknown function (DUF3511)) HSP 1 Score: 52.0 bits (123), Expect = 2.2e-07 Identity = 30/77 (38.96%), Postives = 43/77 (55.84%), Query Frame = 1
BLAST of Cucsa.365800 vs. TAIR10
Match: AT3G13910.1 (AT3G13910.1 Protein of unknown function (DUF3511)) HSP 1 Score: 51.6 bits (122), Expect = 2.9e-07 Identity = 27/75 (36.00%), Postives = 42/75 (56.00%), Query Frame = 1
BLAST of Cucsa.365800 vs. NCBI nr
Match: gi|700190689|gb|KGN45893.1| (hypothetical protein Csa_6G017090 [Cucumis sativus]) HSP 1 Score: 177.9 bits (450), Expect = 7.5e-42 Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1
BLAST of Cucsa.365800 vs. NCBI nr
Match: gi|224082498|ref|XP_002306717.1| (hypothetical protein POPTR_0005s21760g [Populus trichocarpa]) HSP 1 Score: 146.7 bits (369), Expect = 1.9e-32 Identity = 67/87 (77.01%), Postives = 79/87 (90.80%), Query Frame = 1
BLAST of Cucsa.365800 vs. NCBI nr
Match: gi|590601066|ref|XP_007019583.1| (Mediator of RNA polymerase II transcription subunit 8 [Theobroma cacao]) HSP 1 Score: 142.9 bits (359), Expect = 2.7e-31 Identity = 66/87 (75.86%), Postives = 78/87 (89.66%), Query Frame = 1
BLAST of Cucsa.365800 vs. NCBI nr
Match: gi|703103187|ref|XP_010097663.1| (hypothetical protein L484_023803 [Morus notabilis]) HSP 1 Score: 140.6 bits (353), Expect = 1.3e-30 Identity = 66/87 (75.86%), Postives = 75/87 (86.21%), Query Frame = 1
BLAST of Cucsa.365800 vs. NCBI nr
Match: gi|470108360|ref|XP_004290488.1| (PREDICTED: uncharacterized protein LOC101310479 [Fragaria vesca subsp. vesca]) HSP 1 Score: 139.4 bits (350), Expect = 3.0e-30 Identity = 62/85 (72.94%), Postives = 75/85 (88.24%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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