Cucsa.365800 (gene) Cucumber (Gy14) v1

NameCucsa.365800
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionProtein of unknown function (DUF3511)
Locationscaffold03611 : 3694878 .. 3695486 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGTGAGAAGATCAATTTGTTGAAGAAACTAAGGCCAAGTTCTAGGTCATGGAGAAGAGCAAATCATTCCCCAAGTACTCCTCCTCAACCTCGGGTGAGTTCGGTTTCCAAACTCGATCTAACTCTTACAATTTCAACGGTCCGACTGCGAAAGCAACCGGGTTCTCGACCTCGGCCGATCCCGAACTCCAAAGAAAGAGAAGGATTGCGTCTTATAATGTTTTCAACATGGAAAACAAAGTCAAGTCTAGTGTAAAGAACAGCTTCAAATGGATCAAAACTAAATTTAGTGACATTCGCTATGGTTTGTGAGTTTCCtCTTTTtCTTTTtCTTTTTTTtCTTTTTtGAACATTGTGTAAACAAGTTTGGCATTTTGATCCGTCTTTTCAAGACTTGGAACCAAATTCAAGATATAATTAAAGAGTTTGGAAGTTGTGTGTGTTTTTGGCTCTGGCTTTATTTTGTTTCTCCATGCAAATATATAAGCTTTTTTTtCCCAATATATATACAAGATCATTTACCTCTCCTCTTAGTTTTGTTTTGGCTGTTCTTTTCTTTTTTAATTCCCATTTTCATTGTGTATTTAAGTTGAATTTAAAAAATCCACT

mRNA sequence

TGGTGAGAAGATCAATTTGTTGAAGAAACTAAGGCCAAGTTCTAGGTCATGGAGAAGAGCAAATCATTCCCCAAGTACTCCTCCTCAACCTCGGGTGAGTTCGGTTTCCAAACTCGATCTAACTCTTACAATTTCAACGGTCCGACTGCGAAAGCAACCGGGTTCTCGACCTCGGCCGATCCCGAACTCCAAAGAAAGAGAAGGATTGCGTCTTATAATGTTTTCAACATGGAAAACAAAGTCAAGTCTAGTGTAAAGAACAGCTTCAAATGGATCAAAACTAAATTTAGTGACATTCGCTATGGTTTGTGAGTTTCCTCtttttctttttcttttttttcttttttGAACATTGTGTAAACAAGTTTGGCATTTTGATCCGTCTTTTCAAGACTTGGAACCAAATTCAAGATATAATTAAAGAGTTTGGAAGTTGTGTGTGTTTTTGGCTCTGGCTTTATTTTGTTTCTCCATGCAAATATATAAGCTTTTTTTTCCCAATATATATACAAGATCATTTACCTCTCCTCTTAGTTTTGTTTTGGCTGTTCTTTTCTTTTTTAATTCCCATTTTCATTGTGTATTTAAGTTGAATTTAAAAAATCCACT

Coding sequence (CDS)

ATGGAGAAGAGCAAATCATTCCCCAAGTACTCCTCCTCAACCTCGGGTGAGTTCGGTTTCCAAACTCGATCTAACTCTTACAATTTCAACGGTCCGACTGCGAAAGCAACCGGGTTCTCGACCTCGGCCGATCCCGAACTCCAAAGAAAGAGAAGGATTGCGTCTTATAATGTTTTCAACATGGAAAACAAAGTCAAGTCTAGTGTAAAGAACAGCTTCAAATGGATCAAAACTAAATTTAGTGACATTCGCTATGGTTTGTGA

Protein sequence

MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGL*
BLAST of Cucsa.365800 vs. TrEMBL
Match: A0A0A0K8Y3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G017090 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 5.2e-42
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1

Query: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN 60
          MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN
Sbjct: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
          MENKVKSSVKNSFKWIKTKFSDIRYGL
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 87

BLAST of Cucsa.365800 vs. TrEMBL
Match: B9H7V5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s21760g PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.3e-32
Identity = 67/87 (77.01%), Postives = 79/87 (90.80%), Query Frame = 1

Query: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN 60
          MEKSKSFP+YSSS SGEFGF+ RSNSYNFNGP  K  GF+TS+DPEL+RK+RIASYNVF 
Sbjct: 1  MEKSKSFPQYSSSFSGEFGFEDRSNSYNFNGPCQKGNGFATSSDPELKRKKRIASYNVFT 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
          ME K+KS+V+NSFKWIK+KFSD+RYG+
Sbjct: 61 MEGKLKSNVRNSFKWIKSKFSDVRYGM 87

BLAST of Cucsa.365800 vs. TrEMBL
Match: A0A061FIS9_THECC (Mediator of RNA polymerase II transcription subunit 8 OS=Theobroma cacao GN=TCM_047078 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.9e-31
Identity = 66/87 (75.86%), Postives = 78/87 (89.66%), Query Frame = 1

Query: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN 60
          MEKSKSFP+YSSS SGEF F+ RSNSYNFNGP +K+ GF+ S DPEL+RK+RIASYNVF 
Sbjct: 1  MEKSKSFPEYSSSFSGEFDFENRSNSYNFNGPCSKSNGFAASNDPELKRKKRIASYNVFT 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
          ME KVKSSV++SFKWIK+KFSD+RYG+
Sbjct: 61 MEGKVKSSVRSSFKWIKSKFSDVRYGM 87

BLAST of Cucsa.365800 vs. TrEMBL
Match: W9R571_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023803 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 9.2e-31
Identity = 66/87 (75.86%), Postives = 75/87 (86.21%), Query Frame = 1

Query: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN 60
          ME S SFP+YSS+ S EFGFQ RSNSYNFNGP  K +GF+ S+DPELQRK+RIASYNVF 
Sbjct: 1  MENSNSFPEYSSAYSSEFGFQERSNSYNFNGPCQKGSGFAASSDPELQRKKRIASYNVFT 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
           E KVKSSV+NSFKWIK+KFSDIRYG+
Sbjct: 61 TEGKVKSSVRNSFKWIKSKFSDIRYGV 87

BLAST of Cucsa.365800 vs. TrEMBL
Match: V4T8F4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003573mg PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 2.1e-30
Identity = 64/86 (74.42%), Postives = 77/86 (89.53%), Query Frame = 1

Query: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN 60
          MEKSKSFP+YSSS SGEF F  +SNSY FNGP++K  GF+TS+DPE++RK+RIASYNVF 
Sbjct: 1  MEKSKSFPEYSSSFSGEFDFDNQSNSYIFNGPSSKGNGFATSSDPEIKRKKRIASYNVFT 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYG 87
          +ENK+KSSV+NSFKWIK KFSD+RYG
Sbjct: 61 VENKLKSSVRNSFKWIKGKFSDVRYG 86

BLAST of Cucsa.365800 vs. TAIR10
Match: AT4G09890.1 (AT4G09890.1 Protein of unknown function (DUF3511))

HSP 1 Score: 93.2 bits (230), Expect = 8.6e-20
Identity = 52/93 (55.91%), Postives = 66/93 (70.97%), Query Frame = 1

Query: 1  MEKSKSFPKYSSSTS-GEFGF-QTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNV 60
          M+ SKS+ +YSSS S  EFG+ Q RSNSYNFNGP         + DPE++RK+R+ASYN+
Sbjct: 2  MKGSKSYTEYSSSFSTDEFGYDQNRSNSYNFNGPCI-------NTDPEMKRKKRVASYNL 61

Query: 61 FNMENKVKSSVKNSFKWIKTKFS----DIRYGL 88
          F  E K+KS++KNSFKWIK KFS     IRY +
Sbjct: 62 FATEEKLKSTLKNSFKWIKNKFSGDDNSIRYNV 87

BLAST of Cucsa.365800 vs. TAIR10
Match: AT1G72720.1 (AT1G72720.1 Protein of unknown function (DUF3511))

HSP 1 Score: 63.5 bits (153), Expect = 7.3e-11
Identity = 39/100 (39.00%), Postives = 53/100 (53.00%), Query Frame = 1

Query: 2   EKSKSFP----------KYSSSTSGEFGFQT----RSNSYNFNGPTAKATGFSTSADPEL 61
           EKS+S P           YS+ST   +   T     SN+ +      K  GF    + E+
Sbjct: 27  EKSESEPTNQQPPVMMRSYSTSTYNAYQNPTIVRDDSNNKSKRSNKVKKKGFKGLCEAEI 86

Query: 62  QRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGL 88
           QRK+R+ASYNV+ +E +VK S+K SFKW K   S+  YGL
Sbjct: 87  QRKKRVASYNVYGVEGRVKGSMKKSFKWFKETCSNAVYGL 126

BLAST of Cucsa.365800 vs. TAIR10
Match: AT5G11970.1 (AT5G11970.1 Protein of unknown function (DUF3511))

HSP 1 Score: 61.2 bits (147), Expect = 3.6e-10
Identity = 32/85 (37.65%), Postives = 51/85 (60.00%), Query Frame = 1

Query: 10  YSSSTSGEF-----GFQTRSNSYNFNGPTAKATGFSTS---ADPELQRKRRIASYNVFNM 69
           Y  +  G+F      + TR N+  ++    K+   S S    DPELQRK+R+ASY ++ +
Sbjct: 20  YHGNQGGDFRSYSASYGTRENNI-YDVKKEKSIARSKSWGITDPELQRKKRVASYKMYGV 79

Query: 70  ENKVKSSVKNSFKWIKTKFSDIRYG 87
           E KVK S +NSF+W+K +++ + YG
Sbjct: 80  EGKVKGSFRNSFRWLKQRYTQVVYG 103

BLAST of Cucsa.365800 vs. TAIR10
Match: AT3G62640.1 (AT3G62640.1 Protein of unknown function (DUF3511))

HSP 1 Score: 52.0 bits (123), Expect = 2.2e-07
Identity = 30/77 (38.96%), Postives = 43/77 (55.84%), Query Frame = 1

Query: 20  FQTRSNSYNFN-------GPTAKATGFSTS---ADPELQRKRRIASYNVFNMENKVKSSV 79
           + TR +S  F        G T+K    +T     D E +RK+RIA+Y  + +E KVKS+V
Sbjct: 34  YSTRPDSPKFQPSIPPPPGSTSKTRTTATPWRLIDAETKRKKRIATYKTYALEGKVKSTV 93

Query: 80  KNSFKWIKTKFSDIRYG 87
           K  F WIK ++S I +G
Sbjct: 94  KKGFHWIKDRYSHIIHG 110

BLAST of Cucsa.365800 vs. TAIR10
Match: AT3G13910.1 (AT3G13910.1 Protein of unknown function (DUF3511))

HSP 1 Score: 51.6 bits (122), Expect = 2.9e-07
Identity = 27/75 (36.00%), Postives = 42/75 (56.00%), Query Frame = 1

Query: 11 SSSTSGEFGFQTRSNSYNFNGPTAK--------ATGFSTSADPELQRKRRIASYNVFNME 70
          S S     G Q+++N Y      +K        A+   + +DPE +RKRR+A Y V+++E
Sbjct: 22 SGSFDDSAGDQSQTNDYQLKIKKSKSVPNADRAASRSWSFSDPESRRKRRVAGYKVYSVE 81

Query: 71 NKVKSSVKNSFKWIK 78
           K+K S++ SFKW K
Sbjct: 82 QKMKGSIRKSFKWFK 96

BLAST of Cucsa.365800 vs. NCBI nr
Match: gi|700190689|gb|KGN45893.1| (hypothetical protein Csa_6G017090 [Cucumis sativus])

HSP 1 Score: 177.9 bits (450), Expect = 7.5e-42
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1

Query: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN 60
          MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN
Sbjct: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
          MENKVKSSVKNSFKWIKTKFSDIRYGL
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 87

BLAST of Cucsa.365800 vs. NCBI nr
Match: gi|224082498|ref|XP_002306717.1| (hypothetical protein POPTR_0005s21760g [Populus trichocarpa])

HSP 1 Score: 146.7 bits (369), Expect = 1.9e-32
Identity = 67/87 (77.01%), Postives = 79/87 (90.80%), Query Frame = 1

Query: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN 60
          MEKSKSFP+YSSS SGEFGF+ RSNSYNFNGP  K  GF+TS+DPEL+RK+RIASYNVF 
Sbjct: 1  MEKSKSFPQYSSSFSGEFGFEDRSNSYNFNGPCQKGNGFATSSDPELKRKKRIASYNVFT 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
          ME K+KS+V+NSFKWIK+KFSD+RYG+
Sbjct: 61 MEGKLKSNVRNSFKWIKSKFSDVRYGM 87

BLAST of Cucsa.365800 vs. NCBI nr
Match: gi|590601066|ref|XP_007019583.1| (Mediator of RNA polymerase II transcription subunit 8 [Theobroma cacao])

HSP 1 Score: 142.9 bits (359), Expect = 2.7e-31
Identity = 66/87 (75.86%), Postives = 78/87 (89.66%), Query Frame = 1

Query: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN 60
          MEKSKSFP+YSSS SGEF F+ RSNSYNFNGP +K+ GF+ S DPEL+RK+RIASYNVF 
Sbjct: 1  MEKSKSFPEYSSSFSGEFDFENRSNSYNFNGPCSKSNGFAASNDPELKRKKRIASYNVFT 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
          ME KVKSSV++SFKWIK+KFSD+RYG+
Sbjct: 61 MEGKVKSSVRSSFKWIKSKFSDVRYGM 87

BLAST of Cucsa.365800 vs. NCBI nr
Match: gi|703103187|ref|XP_010097663.1| (hypothetical protein L484_023803 [Morus notabilis])

HSP 1 Score: 140.6 bits (353), Expect = 1.3e-30
Identity = 66/87 (75.86%), Postives = 75/87 (86.21%), Query Frame = 1

Query: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN 60
          ME S SFP+YSS+ S EFGFQ RSNSYNFNGP  K +GF+ S+DPELQRK+RIASYNVF 
Sbjct: 1  MENSNSFPEYSSAYSSEFGFQERSNSYNFNGPCQKGSGFAASSDPELQRKKRIASYNVFT 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
           E KVKSSV+NSFKWIK+KFSDIRYG+
Sbjct: 61 TEGKVKSSVRNSFKWIKSKFSDIRYGV 87

BLAST of Cucsa.365800 vs. NCBI nr
Match: gi|470108360|ref|XP_004290488.1| (PREDICTED: uncharacterized protein LOC101310479 [Fragaria vesca subsp. vesca])

HSP 1 Score: 139.4 bits (350), Expect = 3.0e-30
Identity = 62/85 (72.94%), Postives = 75/85 (88.24%), Query Frame = 1

Query: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN 60
          MEKSKSFP+Y+SS SGEFGF+ RSNSYNFNGP  K  GF+T+ DPELQRK+R+ASYNVF 
Sbjct: 1  MEKSKSFPEYTSSYSGEFGFRERSNSYNFNGPNQKGNGFATAGDPELQRKKRVASYNVFT 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRY 86
          ME K+K+S+KNSFKWIK +F+D+RY
Sbjct: 61 MEGKLKTSLKNSFKWIKNRFTDVRY 85

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0K8Y3_CUCSA5.2e-42100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G017090 PE=4 SV=1[more]
B9H7V5_POPTR1.3e-3277.01Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s21760g PE=4 SV=1[more]
A0A061FIS9_THECC1.9e-3175.86Mediator of RNA polymerase II transcription subunit 8 OS=Theobroma cacao GN=TCM_... [more]
W9R571_9ROSA9.2e-3175.86Uncharacterized protein OS=Morus notabilis GN=L484_023803 PE=4 SV=1[more]
V4T8F4_9ROSI2.1e-3074.42Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003573mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G09890.18.6e-2055.91 Protein of unknown function (DUF3511)[more]
AT1G72720.17.3e-1139.00 Protein of unknown function (DUF3511)[more]
AT5G11970.13.6e-1037.65 Protein of unknown function (DUF3511)[more]
AT3G62640.12.2e-0738.96 Protein of unknown function (DUF3511)[more]
AT3G13910.12.9e-0736.00 Protein of unknown function (DUF3511)[more]
Match NameE-valueIdentityDescription
gi|700190689|gb|KGN45893.1|7.5e-42100.00hypothetical protein Csa_6G017090 [Cucumis sativus][more]
gi|224082498|ref|XP_002306717.1|1.9e-3277.01hypothetical protein POPTR_0005s21760g [Populus trichocarpa][more]
gi|590601066|ref|XP_007019583.1|2.7e-3175.86Mediator of RNA polymerase II transcription subunit 8 [Theobroma cacao][more]
gi|703103187|ref|XP_010097663.1|1.3e-3075.86hypothetical protein L484_023803 [Morus notabilis][more]
gi|470108360|ref|XP_004290488.1|3.0e-3072.94PREDICTED: uncharacterized protein LOC101310479 [Fragaria vesca subsp. vesca][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021899DUF3511
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.365800.1Cucsa.365800.1mRNA


Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021899Protein of unknown function DUF3511PFAMPF12023DUF3511coord: 43..86
score: 2.3
NoneNo IPR availablePANTHERPTHR33193FAMILY NOT NAMEDcoord: 1..87
score: 8.1
NoneNo IPR availablePANTHERPTHR33193:SF9SUBFAMILY NOT NAMEDcoord: 1..87
score: 8.1