CmaCh09G011970 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh09G011970
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionMediator of RNA polymerase II transcription subunit 8
LocationCma_Chr09 : 7725739 .. 7726002 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAGAGCAAATCCTTCCCCAAGTACTCGTCCTCATGCTCGGGCGAGTTCACTTTCCAAACCCGATCTAACTCGTACAATTTCAACGGCCCGACTGGGACGGCTACTGGGTTCTCGACCTCGACTGATCCCGAGCTTCAAAGAAAGAGAAGAATTGCGTCGTATAATGTTTTCAACATGGAAAACAAGGTCAAGTCTAGTGTAAAGAACAGCTTCAAGTGGATCAAGACTAAGTTCAGTGACATTCGCTATAGTTTGTGA

mRNA sequence

ATGGAGAAGAGCAAATCCTTCCCCAAGTACTCGTCCTCATGCTCGGGCGAGTTCACTTTCCAAACCCGATCTAACTCGTACAATTTCAACGGCCCGACTGGGACGGCTACTGGGTTCTCGACCTCGACTGATCCCGAGCTTCAAAGAAAGAGAAGAATTGCGTCGTATAATGTTTTCAACATGGAAAACAAGGTCAAGTCTAGTGTAAAGAACAGCTTCAAGTGGATCAAGACTAAGTTCAGTGACATTCGCTATAGTTTGTGA

Coding sequence (CDS)

ATGGAGAAGAGCAAATCCTTCCCCAAGTACTCGTCCTCATGCTCGGGCGAGTTCACTTTCCAAACCCGATCTAACTCGTACAATTTCAACGGCCCGACTGGGACGGCTACTGGGTTCTCGACCTCGACTGATCCCGAGCTTCAAAGAAAGAGAAGAATTGCGTCGTATAATGTTTTCAACATGGAAAACAAGGTCAAGTCTAGTGTAAAGAACAGCTTCAAGTGGATCAAGACTAAGTTCAGTGACATTCGCTATAGTTTGTGA

Protein sequence

MEKSKSFPKYSSSCSGEFTFQTRSNSYNFNGPTGTATGFSTSTDPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYSL
Homology
[Close]
BLAST of CmaCh09G011970 vs. TrEMBL
Match: A0A0A0K8Y3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G017090 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 9.4e-36
Identity = 81/87 (93.10%), Postives = 81/87 (93.10%), Query Frame = 1 

Query: 1  MEKSKSFPKYSSSCSGEFTFQTRSNSYNFNGPTGTATGFSTSTDPELQRKRRIASYNVFN 60
          MEKSKSFPKYSSS SGEF FQTRSNSYNFNGPT  ATGFSTS DPELQRKRRIASYNVFN
Sbjct: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYSL 88
          MENKVKSSVKNSFKWIKTKFSDIRY L
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 87

[Close]
BLAST of CmaCh09G011970 vs. TrEMBL
Match: A0A061FIS9_THECC (Mediator of RNA polymerase II transcription subunit 8 OS=Theobroma cacao GN=TCM_047078 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 7.2e-28
Identity = 64/87 (73.56%), Postives = 75/87 (86.21%), Query Frame = 1 

Query: 1  MEKSKSFPKYSSSCSGEFTFQTRSNSYNFNGPTGTATGFSTSTDPELQRKRRIASYNVFN 60
          MEKSKSFP+YSSS SGEF F+ RSNSYNFNGP   + GF+ S DPEL+RK+RIASYNVF 
Sbjct: 1  MEKSKSFPEYSSSFSGEFDFENRSNSYNFNGPCSKSNGFAASNDPELKRKKRIASYNVFT 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYSL 88
          ME KVKSSV++SFKWIK+KFSD+RY +
Sbjct: 61 MEGKVKSSVRSSFKWIKSKFSDVRYGM 87

[Close]
BLAST of CmaCh09G011970 vs. TrEMBL
Match: B9H7V5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s21760g PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 7.2e-28
Identity = 64/87 (73.56%), Postives = 76/87 (87.36%), Query Frame = 1 

Query: 1  MEKSKSFPKYSSSCSGEFTFQTRSNSYNFNGPTGTATGFSTSTDPELQRKRRIASYNVFN 60
          MEKSKSFP+YSSS SGEF F+ RSNSYNFNGP     GF+TS+DPEL+RK+RIASYNVF 
Sbjct: 1  MEKSKSFPQYSSSFSGEFGFEDRSNSYNFNGPCQKGNGFATSSDPELKRKKRIASYNVFT 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYSL 88
          ME K+KS+V+NSFKWIK+KFSD+RY +
Sbjct: 61 MEGKLKSNVRNSFKWIKSKFSDVRYGM 87

[Close]
BLAST of CmaCh09G011970 vs. TrEMBL
Match: V4T8F4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003573mg PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.4e-26
Identity = 62/85 (72.94%), Postives = 74/85 (87.06%), Query Frame = 1 

Query: 1  MEKSKSFPKYSSSCSGEFTFQTRSNSYNFNGPTGTATGFSTSTDPELQRKRRIASYNVFN 60
          MEKSKSFP+YSSS SGEF F  +SNSY FNGP+    GF+TS+DPE++RK+RIASYNVF 
Sbjct: 1  MEKSKSFPEYSSSFSGEFDFDNQSNSYIFNGPSSKGNGFATSSDPEIKRKKRIASYNVFT 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRY 86
          +ENK+KSSV+NSFKWIK KFSD+RY
Sbjct: 61 VENKLKSSVRNSFKWIKGKFSDVRY 85

[Close]
BLAST of CmaCh09G011970 vs. TrEMBL
Match: A0A067H7W9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034641mg PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.0e-26
Identity = 61/85 (71.76%), Postives = 74/85 (87.06%), Query Frame = 1 

Query: 1  MEKSKSFPKYSSSCSGEFTFQTRSNSYNFNGPTGTATGFSTSTDPELQRKRRIASYNVFN 60
          MEKSKSFP+YSSS SGEF F  +SN+Y FNGP+    GF+TS+DPE++RK+RIASYNVF 
Sbjct: 1  MEKSKSFPEYSSSFSGEFDFDNQSNAYIFNGPSSKGNGFATSSDPEIKRKKRIASYNVFT 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRY 86
          +ENK+KSSV+NSFKWIK KFSD+RY
Sbjct: 61 VENKLKSSVRNSFKWIKGKFSDVRY 85

[Close]
BLAST of CmaCh09G011970 vs. TAIR10
Match: AT4G09890.1 (AT4G09890.1 Protein of unknown function (DUF3511))

HSP 1 Score: 85.5 bits (210), Expect = 1.8e-17
Identity = 52/93 (55.91%), Postives = 67/93 (72.04%), Query Frame = 1 

Query: 1  MEKSKSFPKYSSSCS-GEFTF-QTRSNSYNFNGPTGTATGFSTSTDPELQRKRRIASYNV 60
          M+ SKS+ +YSSS S  EF + Q RSNSYNFNGP         +TDPE++RK+R+ASYN+
Sbjct: 2  MKGSKSYTEYSSSFSTDEFGYDQNRSNSYNFNGPC-------INTDPEMKRKKRVASYNL 61

Query: 61 FNMENKVKSSVKNSFKWIKTKFS----DIRYSL 88
          F  E K+KS++KNSFKWIK KFS     IRY++
Sbjct: 62 FATEEKLKSTLKNSFKWIKNKFSGDDNSIRYNV 87

[Close]
BLAST of CmaCh09G011970 vs. TAIR10
Match: AT5G11970.1 (AT5G11970.1 Protein of unknown function (DUF3511))

HSP 1 Score: 54.3 bits (129), Expect = 4.4e-08
Identity = 33/81 (40.74%), Postives = 49/81 (60.49%), Query Frame = 1 

Query: 7   FPKYSSSCSGEFTFQTRSNS-YNFNGPTGTATGFSTS-TDPELQRKRRIASYNVFNMENK 66
           F  YS+S      + TR N+ Y+       A   S   TDPELQRK+R+ASY ++ +E K
Sbjct: 28  FRSYSAS------YGTRENNIYDVKKEKSIARSKSWGITDPELQRKKRVASYKMYGVEGK 87

Query: 67  VKSSVKNSFKWIKTKFSDIRY 86
           VK S +NSF+W+K +++ + Y
Sbjct: 88  VKGSFRNSFRWLKQRYTQVVY 102

[Close]
BLAST of CmaCh09G011970 vs. TAIR10
Match: AT1G72720.1 (AT1G72720.1 Protein of unknown function (DUF3511))

HSP 1 Score: 53.5 bits (127), Expect = 7.4e-08
Identity = 25/50 (50.00%), Postives = 34/50 (68.00%), Query Frame = 1 

Query: 38  GFSTSTDPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYSL 88
           GF    + E+QRK+R+ASYNV+ +E +VK S+K SFKW K   S+  Y L
Sbjct: 77  GFKGLCEAEIQRKKRVASYNVYGVEGRVKGSMKKSFKWFKETCSNAVYGL 126

[Close]
BLAST of CmaCh09G011970 vs. TAIR10
Match: AT2G19460.1 (AT2G19460.1 Protein of unknown function (DUF3511))

HSP 1 Score: 48.5 bits (114), Expect = 2.4e-06
Identity = 20/36 (55.56%), Postives = 27/36 (75.00%), Query Frame = 1 

Query: 44  DPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTK 80
           DP+LQRK+R+ SY  + +E K+K S + SFKWIK K
Sbjct: 75  DPDLQRKKRVVSYRAYTVEGKLKGSFRKSFKWIKDK 110

[Close]
BLAST of CmaCh09G011970 vs. TAIR10
Match: AT2G47480.1 (AT2G47480.1 Protein of unknown function (DUF3511))

HSP 1 Score: 48.5 bits (114), Expect = 2.4e-06
Identity = 21/41 (51.22%), Postives = 30/41 (73.17%), Query Frame = 1 

Query: 43  TDPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDI 84
           +D E++RK+RIA Y  + +E KVKS++KN F+WIK K   I
Sbjct: 66  SDAEMKRKKRIARYKAYTVEGKVKSTLKNGFRWIKNKCCQI 106

[Close]
BLAST of CmaCh09G011970 vs. NCBI nr
Match: gi|700190689|gb|KGN45893.1| (hypothetical protein Csa_6G017090 [Cucumis sativus])

HSP 1 Score: 157.1 bits (396), Expect = 1.4e-35
Identity = 81/87 (93.10%), Postives = 81/87 (93.10%), Query Frame = 1 

Query: 1  MEKSKSFPKYSSSCSGEFTFQTRSNSYNFNGPTGTATGFSTSTDPELQRKRRIASYNVFN 60
          MEKSKSFPKYSSS SGEF FQTRSNSYNFNGPT  ATGFSTS DPELQRKRRIASYNVFN
Sbjct: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYSL 88
          MENKVKSSVKNSFKWIKTKFSDIRY L
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 87

[Close]
BLAST of CmaCh09G011970 vs. NCBI nr
Match: gi|224082498|ref|XP_002306717.1| (hypothetical protein POPTR_0005s21760g [Populus trichocarpa])

HSP 1 Score: 131.0 bits (328), Expect = 1.0e-27
Identity = 64/87 (73.56%), Postives = 76/87 (87.36%), Query Frame = 1 

Query: 1  MEKSKSFPKYSSSCSGEFTFQTRSNSYNFNGPTGTATGFSTSTDPELQRKRRIASYNVFN 60
          MEKSKSFP+YSSS SGEF F+ RSNSYNFNGP     GF+TS+DPEL+RK+RIASYNVF 
Sbjct: 1  MEKSKSFPQYSSSFSGEFGFEDRSNSYNFNGPCQKGNGFATSSDPELKRKKRIASYNVFT 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYSL 88
          ME K+KS+V+NSFKWIK+KFSD+RY +
Sbjct: 61 MEGKLKSNVRNSFKWIKSKFSDVRYGM 87

[Close]
BLAST of CmaCh09G011970 vs. NCBI nr
Match: gi|590601066|ref|XP_007019583.1| (Mediator of RNA polymerase II transcription subunit 8 [Theobroma cacao])

HSP 1 Score: 131.0 bits (328), Expect = 1.0e-27
Identity = 64/87 (73.56%), Postives = 75/87 (86.21%), Query Frame = 1 

Query: 1  MEKSKSFPKYSSSCSGEFTFQTRSNSYNFNGPTGTATGFSTSTDPELQRKRRIASYNVFN 60
          MEKSKSFP+YSSS SGEF F+ RSNSYNFNGP   + GF+ S DPEL+RK+RIASYNVF 
Sbjct: 1  MEKSKSFPEYSSSFSGEFDFENRSNSYNFNGPCSKSNGFAASNDPELKRKKRIASYNVFT 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYSL 88
          ME KVKSSV++SFKWIK+KFSD+RY +
Sbjct: 61 MEGKVKSSVRSSFKWIKSKFSDVRYGM 87

[Close]
BLAST of CmaCh09G011970 vs. NCBI nr
Match: gi|567883903|ref|XP_006434510.1| (hypothetical protein CICLE_v10003573mg [Citrus clementina])

HSP 1 Score: 126.7 bits (317), Expect = 2.0e-26
Identity = 62/85 (72.94%), Postives = 74/85 (87.06%), Query Frame = 1 

Query: 1  MEKSKSFPKYSSSCSGEFTFQTRSNSYNFNGPTGTATGFSTSTDPELQRKRRIASYNVFN 60
          MEKSKSFP+YSSS SGEF F  +SNSY FNGP+    GF+TS+DPE++RK+RIASYNVF 
Sbjct: 1  MEKSKSFPEYSSSFSGEFDFDNQSNSYIFNGPSSKGNGFATSSDPEIKRKKRIASYNVFT 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRY 86
          +ENK+KSSV+NSFKWIK KFSD+RY
Sbjct: 61 VENKLKSSVRNSFKWIKGKFSDVRY 85

[Close]
BLAST of CmaCh09G011970 vs. NCBI nr
Match: gi|985472200|ref|XP_015381422.1| (PREDICTED: uncharacterized protein LOC107174785 [Citrus sinensis])

HSP 1 Score: 125.6 bits (314), Expect = 4.4e-26
Identity = 61/85 (71.76%), Postives = 74/85 (87.06%), Query Frame = 1 

Query: 1  MEKSKSFPKYSSSCSGEFTFQTRSNSYNFNGPTGTATGFSTSTDPELQRKRRIASYNVFN 60
          MEKSKSFP+YSSS SGEF F  +SN+Y FNGP+    GF+TS+DPE++RK+RIASYNVF 
Sbjct: 1  MEKSKSFPEYSSSFSGEFDFDNQSNAYIFNGPSSKGNGFATSSDPEIKRKKRIASYNVFT 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRY 86
          +ENK+KSSV+NSFKWIK KFSD+RY
Sbjct: 61 VENKLKSSVRNSFKWIKGKFSDVRY 85

The following BLAST results are available for this feature:
BLAST of CmaCh09G011970 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh09G011970 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K8Y3_CUCSA9.4e-3693.10Uncharacterized protein OS=Cucumis sativus GN=Csa_6G017090 PE=4 SV=1[more]
A0A061FIS9_THECC7.2e-2873.56Mediator of RNA polymerase II transcription subunit 8 OS=Theobroma cacao GN=TCM_... [more]
B9H7V5_POPTR7.2e-2873.56Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s21760g PE=4 SV=1[more]
V4T8F4_9ROSI1.4e-2672.94Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003573mg PE=4 SV=1[more]
A0A067H7W9_CITSI3.0e-2671.76Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034641mg PE=4 SV=1[more]
BLAST of CmaCh09G011970 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G09890.11.8e-1755.91 Protein of unknown function (DUF3511)[more]
AT5G11970.14.4e-0840.74 Protein of unknown function (DUF3511)[more]
AT1G72720.17.4e-0850.00 Protein of unknown function (DUF3511)[more]
AT2G19460.12.4e-0655.56 Protein of unknown function (DUF3511)[more]
AT2G47480.12.4e-0651.22 Protein of unknown function (DUF3511)[more]
BLAST of CmaCh09G011970 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190689|gb|KGN45893.1|1.4e-3593.10hypothetical protein Csa_6G017090 [Cucumis sativus][more]
gi|224082498|ref|XP_002306717.1|1.0e-2773.56hypothetical protein POPTR_0005s21760g [Populus trichocarpa][more]
gi|590601066|ref|XP_007019583.1|1.0e-2773.56Mediator of RNA polymerase II transcription subunit 8 [Theobroma cacao][more]
gi|567883903|ref|XP_006434510.1|2.0e-2672.94hypothetical protein CICLE_v10003573mg [Citrus clementina][more]
gi|985472200|ref|XP_015381422.1|4.4e-2671.76PREDICTED: uncharacterized protein LOC107174785 [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021899DUF3511
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh09G011970.1CmaCh09G011970.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021899Protein of unknown function DUF3511PFAMPF12023DUF3511coord: 43..85
score: 7.5
NoneNo IPR availablePANTHERPTHR33193FAMILY NOT NAMEDcoord: 1..85
score: 2.0
NoneNo IPR availablePANTHERPTHR33193:SF9SUBFAMILY NOT NAMEDcoord: 1..85
score: 2.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh09G011970ClCG08G003150Watermelon (Charleston Gray)cmawcgB035
CmaCh09G011970CmoCh09G012120Cucurbita moschata (Rifu)cmacmoB030
CmaCh09G011970Lsi08G002520Bottle gourd (USVL1VR-Ls)cmalsiB043
CmaCh09G011970Cp4.1LG06g09680Cucurbita pepo (Zucchini)cmacpeB064
CmaCh09G011970CsaV3_6G002840Cucumber (Chinese Long) v3cmacucB0047
CmaCh09G011970Cla97C08G146860Watermelon (97103) v2cmawmbB040
CmaCh09G011970Carg27055Silver-seed gourdcarcmaB0036
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh09G011970Cucurbita maxima (Rimu)cmacmaB056
CmaCh09G011970Cucurbita moschata (Rifu)cmacmoB027
CmaCh09G011970Cucurbita moschata (Rifu)cmacmoB056
CmaCh09G011970Watermelon (Charleston Gray)cmawcgB039
CmaCh09G011970Watermelon (97103) v1cmawmB016
CmaCh09G011970Cucurbita pepo (Zucchini)cmacpeB046
CmaCh09G011970Watermelon (97103) v2cmawmbB046