Carg27055 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGAAGAGCAAATCCTTCCCCAAGTACTCGTCCTCGTGCTCGGGCGAGTTCAGTTTCCAAACCCGATCCAACTCGTACAATTTCAATGGCCCGACTACAAAGGCTACTGGGTTCTCGACCTCGACTGATCCCGAGCTTCAAAGGAAGAGAAGAATTGCGTCGTATAATGTTTTCAACATGGAAAACAAGGTCAAGTCTAGTGTAAAGAACAGCTTCAAGTGGATCAAGACTAAGTTTAGCGACATTCGCTATGGTTTGTGA ATGGAGAAGAGCAAATCCTTCCCCAAGTACTCGTCCTCGTGCTCGGGCGAGTTCAGTTTCCAAACCCGATCCAACTCGTACAATTTCAATGGCCCGACTACAAAGGCTACTGGGTTCTCGACCTCGACTGATCCCGAGCTTCAAAGGAAGAGAAGAATTGCGTCGTATAATGTTTTCAACATGGAAAACAAGGTCAAGTCTAGTGTAAAGAACAGCTTCAAGTGGATCAAGACTAAGTTTAGCGACATTCGCTATGGTTTGTGA ATGGAGAAGAGCAAATCCTTCCCCAAGTACTCGTCCTCGTGCTCGGGCGAGTTCAGTTTCCAAACCCGATCCAACTCGTACAATTTCAATGGCCCGACTACAAAGGCTACTGGGTTCTCGACCTCGACTGATCCCGAGCTTCAAAGGAAGAGAAGAATTGCGTCGTATAATGTTTTCAACATGGAAAACAAGGTCAAGTCTAGTGTAAAGAACAGCTTCAAGTGGATCAAGACTAAGTTTAGCGACATTCGCTATGGTTTGTGA MEKSKSFPKYSSSCSGEFSFQTRSNSYNFNGPTTKATGFSTSTDPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGL
BLAST of Carg27055 vs. NCBI nr
Match: XP_022930185.1 (uncharacterized protein LOC111436683 [Cucurbita moschata]) HSP 1 Score: 171.8 bits (434), Expect = 1.0e-39 Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0
BLAST of Carg27055 vs. NCBI nr
Match: XP_023536368.1 (uncharacterized protein LOC111797558 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 169.1 bits (427), Expect = 6.7e-39 Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 0
BLAST of Carg27055 vs. NCBI nr
Match: XP_022974055.1 (uncharacterized protein LOC111472683 [Cucurbita maxima]) HSP 1 Score: 163.3 bits (412), Expect = 3.7e-37 Identity = 83/87 (95.40%), Postives = 84/87 (96.55%), Query Frame = 0
BLAST of Carg27055 vs. NCBI nr
Match: KGN45893.1 (hypothetical protein Csa_6G017090 [Cucumis sativus]) HSP 1 Score: 162.5 bits (410), Expect = 6.3e-37 Identity = 83/87 (95.40%), Postives = 83/87 (95.40%), Query Frame = 0
BLAST of Carg27055 vs. NCBI nr
Match: PON52652.1 (hypothetical protein PanWU01x14_207620 [Parasponia andersonii]) HSP 1 Score: 137.1 bits (344), Expect = 2.8e-29 Identity = 68/87 (78.16%), Postives = 78/87 (89.66%), Query Frame = 0
BLAST of Carg27055 vs. TAIR10
Match: AT4G09890.1 (Protein of unknown function (DUF3511)) HSP 1 Score: 85.9 bits (211), Expect = 1.4e-17 Identity = 52/93 (55.91%), Postives = 66/93 (70.97%), Query Frame = 0
BLAST of Carg27055 vs. TAIR10
Match: AT5G11970.1 (Protein of unknown function (DUF3511)) HSP 1 Score: 57.8 bits (138), Expect = 3.9e-09 Identity = 34/85 (40.00%), Postives = 53/85 (62.35%), Query Frame = 0
BLAST of Carg27055 vs. TAIR10
Match: AT1G72720.1 (Protein of unknown function (DUF3511)) HSP 1 Score: 53.9 bits (128), Expect = 5.7e-08 Identity = 38/100 (38.00%), Postives = 52/100 (52.00%), Query Frame = 0
BLAST of Carg27055 vs. TAIR10
Match: AT3G05725.1 (Protein of unknown function (DUF3511)) HSP 1 Score: 49.7 bits (117), Expect = 1.1e-06 Identity = 20/44 (45.45%), Postives = 34/44 (77.27%), Query Frame = 0
BLAST of Carg27055 vs. TAIR10
Match: AT2G19460.1 (Protein of unknown function (DUF3511)) HSP 1 Score: 48.5 bits (114), Expect = 2.4e-06 Identity = 20/36 (55.56%), Postives = 27/36 (75.00%), Query Frame = 0
BLAST of Carg27055 vs. TrEMBL
Match: tr|A0A0A0K8Y3|A0A0A0K8Y3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G017090 PE=4 SV=1) HSP 1 Score: 162.5 bits (410), Expect = 4.1e-37 Identity = 83/87 (95.40%), Postives = 83/87 (95.40%), Query Frame = 0
BLAST of Carg27055 vs. TrEMBL
Match: tr|A0A2P5BV48|A0A2P5BV48_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_207620 PE=4 SV=1) HSP 1 Score: 137.1 bits (344), Expect = 1.9e-29 Identity = 68/87 (78.16%), Postives = 78/87 (89.66%), Query Frame = 0
BLAST of Carg27055 vs. TrEMBL
Match: tr|B9H7V5|B9H7V5_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G195800v3 PE=4 SV=1) HSP 1 Score: 136.7 bits (343), Expect = 2.4e-29 Identity = 66/87 (75.86%), Postives = 78/87 (89.66%), Query Frame = 0
BLAST of Carg27055 vs. TrEMBL
Match: tr|A0A061FIS9|A0A061FIS9_THECC (Mediator of RNA polymerase II transcription subunit 8 OS=Theobroma cacao OX=3641 GN=TCM_047078 PE=4 SV=1) HSP 1 Score: 136.3 bits (342), Expect = 3.2e-29 Identity = 66/87 (75.86%), Postives = 78/87 (89.66%), Query Frame = 0
BLAST of Carg27055 vs. TrEMBL
Match: tr|A0A2P5FEP4|A0A2P5FEP4_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_078380 PE=4 SV=1) HSP 1 Score: 134.8 bits (338), Expect = 9.3e-29 Identity = 66/87 (75.86%), Postives = 79/87 (90.80%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: None |