Lsi07G010050 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi07G010050
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionGenomic DNA, chromosome 5, TAC clone:K3K3
Locationchr07 : 14428166 .. 14428495 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTCGATTACGAAGAAACACAGAATACCGTGGAAGCAATCAACCAGAAGAACGGTTTTGCGATCGAGGTACGGTTCTCGGATCCTTAGAGCTCGAAGAAACCACAAAAATGGCGGAAAAGCCTGCACCTCAGACGTATCGGCGAAGCTTGAGTCGCTCCAGAGCCTCATTCCGACTCGCAGTGAAGACGGTGGACATCGGAGAGCGGAGGAGTTGTTTCAGCAGACGGCGGATTACATCGTGCTGTTGAAGAATCAGGTGTTCGTTCTACAGAGGCTGATCGAGTTTTACGGATCCGGCGATAGAGAAAACGCCGTATCCTCGTAG

mRNA sequence

ATGAGTTCGATTACGAAGAAACACAGAATACCGTGGAAGCAATCAACCAGAAGAACGGTTTTGCGATCGAGGTACGGTTCTCGGATCCTTAGAGCTCGAAGAAACCACAAAAATGGCGGAAAAGCCTGCACCTCAGACGTATCGGCGAAGCTTGAGTCGCTCCAGAGCCTCATTCCGACTCGCAGTGAAGACGGTGGACATCGGAGAGCGGAGGAGTTGTTTCAGCAGACGGCGGATTACATCGTGCTGTTGAAGAATCAGGTGTTCGTTCTACAGAGGCTGATCGAGTTTTACGGATCCGGCGATAGAGAAAACGCCGTATCCTCGTAG

Coding sequence (CDS)

ATGAGTTCGATTACGAAGAAACACAGAATACCGTGGAAGCAATCAACCAGAAGAACGGTTTTGCGATCGAGGTACGGTTCTCGGATCCTTAGAGCTCGAAGAAACCACAAAAATGGCGGAAAAGCCTGCACCTCAGACGTATCGGCGAAGCTTGAGTCGCTCCAGAGCCTCATTCCGACTCGCAGTGAAGACGGTGGACATCGGAGAGCGGAGGAGTTGTTTCAGCAGACGGCGGATTACATCGTGCTGTTGAAGAATCAGGTGTTCGTTCTACAGAGGCTGATCGAGTTTTACGGATCCGGCGATAGAGAAAACGCCGTATCCTCGTAG

Protein sequence

MSSITKKHRIPWKQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGSGDRENAVSS
Homology
[Close]
BLAST of Lsi07G010050 vs. TrEMBL
Match: W9QIE0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_021014 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 5.7e-14
Identity = 57/114 (50.00%), Postives = 76/114 (66.67%), Query Frame = 1 

Query: 1   MSSITKKHRIPWKQSTRRT---VLRSRYGSRILRA---RRNHKNGGKACTSDVSAKLESL 60
           M S TK  +I  +++ RR     LR R  SR   A   RR   NGG+ C S VS KLE+L
Sbjct: 1   MKSSTKNQKISARKTRRRRRIGSLRRRPRSRDCCAAVSRRRCDNGGRTC-SKVSDKLEAL 60

Query: 61  QSLIPTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGSGDRENAVS 109
           ++LIP  +++G   +A++LFQQTADYIVLL+ +V +LQ+LIEFYGS + EN VS
Sbjct: 61  KNLIP--AQEGEIVKADQLFQQTADYIVLLRAKVVILQKLIEFYGSSESENVVS 111

[Close]
BLAST of Lsi07G010050 vs. TrEMBL
Match: A0A067JTG6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19930 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.3e-13
Identity = 53/102 (51.96%), Postives = 71/102 (69.61%), Query Frame = 1 

Query: 1   MSSITKKHRIPWKQSTRRTVLRSRYGSRILRARRNHKNGGKAC--TSDVSAKLESLQSLI 60
           MSS++K  +I   ++ RR    S    R  +A+R+  NGG+ C   S VS KLE+L++LI
Sbjct: 1   MSSVSKNSKISLGKTPRRR-RTSTCQRRFRKAKRSTINGGRTCFSKSKVSEKLEALKNLI 60

Query: 61  PTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGS 101
           P  + +G   +AE+LFQ+TADYIVLL+ QVFVLQRLIEFYGS
Sbjct: 61  P--ANNGETVKAEQLFQETADYIVLLRTQVFVLQRLIEFYGS 99

[Close]
BLAST of Lsi07G010050 vs. TrEMBL
Match: F6H405_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0068g00510 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.8e-13
Identity = 46/85 (54.12%), Postives = 62/85 (72.94%), Query Frame = 1 

Query: 23  SRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSEDGGHRRAEELFQQTADYIV 82
           +R   R+ R  R+  NGG + +S VS KLE+L+SL+P  +   G  +A++LFQ+TADYIV
Sbjct: 19  ARLCCRVRRGSRSFGNGGDS-SSKVSDKLEALRSLVPVHN---GDIQADQLFQETADYIV 78

Query: 83  LLKNQVFVLQRLIEFYGSGDRENAV 108
           LL+ QV +LQRLI+FYGSG  ENAV
Sbjct: 79  LLRKQVVILQRLIQFYGSGHEENAV 99

[Close]
BLAST of Lsi07G010050 vs. TrEMBL
Match: B9SJE1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0525880 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 6.3e-13
Identity = 54/119 (45.38%), Postives = 74/119 (62.18%), Query Frame = 1 

Query: 1   MSSITKKHRIPWKQSTR----RTVLRSRYGSRILRARRN----HKNGGKACTSDVSAKLE 60
           MSS++K  +I  KQ  +    RT +  R   R++  RR      +      +S VS KLE
Sbjct: 1   MSSVSKNSKISMKQKKKTPRKRTSILERRRRRLIHVRRRLCKKAQRSSTCSSSKVSHKLE 60

Query: 61  SLQSLIPTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGS----GDRENAV 108
           +L++LIP  + +G   +A++LFQ+TADYIVLL+ QVFVLQRLI+FYGS     D ENAV
Sbjct: 61  ALKNLIP--ANNGEIVKADQLFQETADYIVLLRTQVFVLQRLIQFYGSSTTEADNENAV 117

[Close]
BLAST of Lsi07G010050 vs. TrEMBL
Match: A0A103YHA6_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_012550 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.1e-12
Identity = 44/96 (45.83%), Postives = 62/96 (64.58%), Query Frame = 1 

Query: 13  KQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSEDGGH-RRAE 72
           K    R  LR   GS+  R R +HKN     +S VS KLE+L++LIP +  DG     A+
Sbjct: 9   KNFAPRKSLRGSSGSQHRRCRSHHKNSTITTSSSVSDKLEALKNLIPAQEVDGAAPSSAD 68

Query: 73  ELFQQTADYIVLLKNQVFVLQRLIEFYGSGDRENAV 108
           +LFQ+TADYI+LL+ QV VLQ+L++FYGS    +++
Sbjct: 69  QLFQETADYILLLRTQVSVLQKLVDFYGSSSSSSSL 104

[Close]
BLAST of Lsi07G010050 vs. TAIR10
Match: AT5G39240.1 (AT5G39240.1 unknown protein)

HSP 1 Score: 60.8 bits (146), Expect = 5.8e-10
Identity = 40/96 (41.67%), Postives = 52/96 (54.17%), Query Frame = 1 

Query: 22  RSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRS-------------EDGGHR 81
           RSR G R  +   N +  G       S KL++L+SL+P  S             ED    
Sbjct: 8   RSRGGRRTSKKFGNRRTSGG---EKFSEKLQALKSLLPPPSKMTEQSRQDAYVEEDSSVG 67

Query: 82  RAEELFQQTADYIVLLKNQVFVLQRLIEFYGSGDRE 105
             E+LFQ+TADYIV L+ QV VLQ+LIE YGS D++
Sbjct: 68  ETEQLFQETADYIVRLRGQVVVLQKLIEIYGSSDQK 100

[Close]
BLAST of Lsi07G010050 vs. TAIR10
Match: AT3G29370.1 (AT3G29370.1 unknown protein)

HSP 1 Score: 51.6 bits (122), Expect = 3.5e-07
Identity = 39/96 (40.62%), Postives = 50/96 (52.08%), Query Frame = 1 

Query: 13  KQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSEDGGHRRAEE 72
           K  T R   R+   SR         NG       V  KL +L+SL+P     GG    EE
Sbjct: 5   KTQTTRGRRRANVSSRTRVLHTCCGNGSSDGGKTVMEKLLALKSLLPPPVNVGGG-ETEE 64

Query: 73  LFQQTADYIVLLKNQVFVLQRLIEFY-GSGDRENAV 108
           LFQ+TA+YIV L+ QV VL++LIE Y  S D++  V
Sbjct: 65  LFQETAEYIVKLRTQVVVLKKLIEIYDNSSDQKKDV 99

[Close]
BLAST of Lsi07G010050 vs. NCBI nr
Match: gi|659125877|ref|XP_008462902.1| (PREDICTED: transcription factor UPBEAT1-like [Cucumis melo])

HSP 1 Score: 161.4 bits (407), Expect = 9.0e-37
Identity = 86/109 (78.90%), Postives = 95/109 (87.16%), Query Frame = 1 

Query: 1   MSSITKKHRIPWKQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPT 60
           MSSI KKHRIPWKQSTRRTVL SR     +R  RNH+NGG AC SD+SAKLESLQSLIP+
Sbjct: 1   MSSIGKKHRIPWKQSTRRTVLPSRK----VRGGRNHQNGGMACASDLSAKLESLQSLIPS 60

Query: 61  RSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGSGDRENAVSS 110
           RS++ G RRAE+LF+QTADYIVLLK+QVFVLQRLIEFYGS DRENAVSS
Sbjct: 61  RSDEEGVRRAEDLFKQTADYIVLLKSQVFVLQRLIEFYGSDDRENAVSS 105

[Close]
BLAST of Lsi07G010050 vs. NCBI nr
Match: gi|645249718|ref|XP_008230869.1| (PREDICTED: uncharacterized protein LOC103330096 [Prunus mume])

HSP 1 Score: 85.1 bits (209), Expect = 8.2e-14
Identity = 53/107 (49.53%), Postives = 71/107 (66.36%), Query Frame = 1 

Query: 7   KHRIPWKQSTRRTVLRSRYGSRILRA-RRNHKNGG---KACTSDVSAKLESLQSLIPTRS 66
           K  +  ++ TRR   R R GSR   A RR+  NGG   K  +  VSAKLE+L+SLI + S
Sbjct: 9   KASLAGRRRTRRISSRRRLGSRACGAPRRSFNNGGRKSKCSSKTVSAKLETLKSLI-SPS 68

Query: 67  EDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGSGDRENAVSS 110
             G   +A+ELFQ+TADYIVLL+ QV +LQRL+E YGS ++EN  ++
Sbjct: 69  HAGKTLKADELFQETADYIVLLRTQVVILQRLVELYGSSEKENIAAA 114

[Close]
BLAST of Lsi07G010050 vs. NCBI nr
Match: gi|703073730|ref|XP_010089621.1| (hypothetical protein L484_021014 [Morus notabilis])

HSP 1 Score: 85.1 bits (209), Expect = 8.2e-14
Identity = 57/114 (50.00%), Postives = 76/114 (66.67%), Query Frame = 1 

Query: 1   MSSITKKHRIPWKQSTRRT---VLRSRYGSRILRA---RRNHKNGGKACTSDVSAKLESL 60
           M S TK  +I  +++ RR     LR R  SR   A   RR   NGG+ C S VS KLE+L
Sbjct: 1   MKSSTKNQKISARKTRRRRRIGSLRRRPRSRDCCAAVSRRRCDNGGRTC-SKVSDKLEAL 60

Query: 61  QSLIPTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGSGDRENAVS 109
           ++LIP  +++G   +A++LFQQTADYIVLL+ +V +LQ+LIEFYGS + EN VS
Sbjct: 61  KNLIP--AQEGEIVKADQLFQQTADYIVLLRAKVVILQKLIEFYGSSESENVVS 111

[Close]
BLAST of Lsi07G010050 vs. NCBI nr
Match: gi|643714876|gb|KDP27231.1| (hypothetical protein JCGZ_19930 [Jatropha curcas])

HSP 1 Score: 84.0 bits (206), Expect = 1.8e-13
Identity = 53/102 (51.96%), Postives = 71/102 (69.61%), Query Frame = 1 

Query: 1   MSSITKKHRIPWKQSTRRTVLRSRYGSRILRARRNHKNGGKAC--TSDVSAKLESLQSLI 60
           MSS++K  +I   ++ RR    S    R  +A+R+  NGG+ C   S VS KLE+L++LI
Sbjct: 1   MSSVSKNSKISLGKTPRRR-RTSTCQRRFRKAKRSTINGGRTCFSKSKVSEKLEALKNLI 60

Query: 61  PTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGS 101
           P  + +G   +AE+LFQ+TADYIVLL+ QVFVLQRLIEFYGS
Sbjct: 61  P--ANNGETVKAEQLFQETADYIVLLRTQVFVLQRLIEFYGS 99

[Close]
BLAST of Lsi07G010050 vs. NCBI nr
Match: gi|255570300|ref|XP_002526110.1| (PREDICTED: uncharacterized protein LOC8285064 [Ricinus communis])

HSP 1 Score: 81.6 bits (200), Expect = 9.1e-13
Identity = 54/119 (45.38%), Postives = 74/119 (62.18%), Query Frame = 1 

Query: 1   MSSITKKHRIPWKQSTR----RTVLRSRYGSRILRARRN----HKNGGKACTSDVSAKLE 60
           MSS++K  +I  KQ  +    RT +  R   R++  RR      +      +S VS KLE
Sbjct: 1   MSSVSKNSKISMKQKKKTPRKRTSILERRRRRLIHVRRRLCKKAQRSSTCSSSKVSHKLE 60

Query: 61  SLQSLIPTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGS----GDRENAV 108
           +L++LIP  + +G   +A++LFQ+TADYIVLL+ QVFVLQRLI+FYGS     D ENAV
Sbjct: 61  ALKNLIP--ANNGEIVKADQLFQETADYIVLLRTQVFVLQRLIQFYGSSTTEADNENAV 117

The following BLAST results are available for this feature:
BLAST of Lsi07G010050 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi07G010050 vs. TrEMBL
Match NameE-valueIdentityDescription
W9QIE0_9ROSA5.7e-1450.00Uncharacterized protein OS=Morus notabilis GN=L484_021014 PE=4 SV=1[more]
A0A067JTG6_JATCU1.3e-1351.96Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19930 PE=4 SV=1[more]
F6H405_VITVI2.8e-1354.12Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0068g00510 PE=4 SV=... [more]
B9SJE1_RICCO6.3e-1345.38Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0525880 PE=4 SV=1[more]
A0A103YHA6_CYNCS4.1e-1245.83Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_012550 PE=4 ... [more]
BLAST of Lsi07G010050 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G39240.15.8e-1041.67 unknown protein[more]
AT3G29370.13.5e-0740.63 unknown protein[more]
BLAST of Lsi07G010050 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659125877|ref|XP_008462902.1|9.0e-3778.90PREDICTED: transcription factor UPBEAT1-like [Cucumis melo][more]
gi|645249718|ref|XP_008230869.1|8.2e-1449.53PREDICTED: uncharacterized protein LOC103330096 [Prunus mume][more]
gi|703073730|ref|XP_010089621.1|8.2e-1450.00hypothetical protein L484_021014 [Morus notabilis][more]
gi|643714876|gb|KDP27231.1|1.8e-1351.96hypothetical protein JCGZ_19930 [Jatropha curcas][more]
gi|255570300|ref|XP_002526110.1|9.1e-1345.38PREDICTED: uncharacterized protein LOC8285064 [Ricinus communis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi07G010050.1Lsi07G010050.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33124FAMILY NOT NAMEDcoord: 22..105
score: 1.9
NoneNo IPR availablePANTHERPTHR33124:SF9SUBFAMILY NOT NAMEDcoord: 22..105
score: 1.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi07G010050CmaCh01G004520Cucurbita maxima (Rimu)cmalsiB448
Lsi07G010050CmoCh01G004870Cucurbita moschata (Rifu)cmolsiB435
Lsi07G010050Cla002296Watermelon (97103) v1lsiwmB437
Lsi07G010050ClCG07G007410Watermelon (Charleston Gray)lsiwcgB417
Lsi07G010050Cla97C07G134790Watermelon (97103) v2lsiwmbB416
Lsi07G010050Bhi01G001651Wax gourdlsiwgoB556
Lsi07G010050Carg20402Silver-seed gourdcarlsiB640
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi07G010050Melon (DHL92) v3.6.1lsimedB466
Lsi07G010050Cucurbita maxima (Rimu)cmalsiB257
Lsi07G010050Cucurbita moschata (Rifu)cmolsiB245
Lsi07G010050Cucurbita pepo (Zucchini)cpelsiB475
Lsi07G010050Cucurbita pepo (Zucchini)cpelsiB517
Lsi07G010050Melon (DHL92) v3.5.1lsimeB448