CmoCh01G004870 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G004870
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Genomic DNA, chromosome 5, TAC clone:K3K3
Location	Cmo_Chr01 : 2335149 .. 2335481 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCGATCGCAAAGAAACATAGAATGTCATGGAAGCAATCAACGAGAAGAGCGGTTTTGCGATCGAGGTACGGTTCTAGGATCCTCAGAGCTCGTAGAATCCACAAAAATGGCGGAAAAGCGTGCTCATCAGACGTATCGGCGAGGCTTGAGGCGCTCCAGAGTCTCATTCCGACTCAGAACAACGGCGAAGGACATCACCGGAGATCGGAGGAGTTGTTTCAAGAGACGGCGGATTACATCGTGCTTTTGAAGAATCAGGTGTTCGTTTTGCAGAGGCTGATCGAGTTTTACGGATCCGATGAGAGAGAAAATGCCGTATCAGCGTAG

mRNA sequence

ATGAGTTCGATCGCAAAGAAACATAGAATGTCATGGAAGCAATCAACGAGAAGAGCGGTTTTGCGATCGAGGTACGGTTCTAGGATCCTCAGAGCTCGTAGAATCCACAAAAATGGCGGAAAAGCGTGCTCATCAGACGTATCGGCGAGGCTTGAGGCGCTCCAGAGTCTCATTCCGACTCAGAACAACGGCGAAGGACATCACCGGAGATCGGAGGAGTTGTTTCAAGAGACGGCGGATTACATCGTGCTTTTGAAGAATCAGGTGTTCGTTTTGCAGAGGCTGATCGAGTTTTACGGATCCGATGAGAGAGAAAATGCCGTATCAGCGTAG

Coding sequence (CDS)

ATGAGTTCGATCGCAAAGAAACATAGAATGTCATGGAAGCAATCAACGAGAAGAGCGGTTTTGCGATCGAGGTACGGTTCTAGGATCCTCAGAGCTCGTAGAATCCACAAAAATGGCGGAAAAGCGTGCTCATCAGACGTATCGGCGAGGCTTGAGGCGCTCCAGAGTCTCATTCCGACTCAGAACAACGGCGAAGGACATCACCGGAGATCGGAGGAGTTGTTTCAAGAGACGGCGGATTACATCGTGCTTTTGAAGAATCAGGTGTTCGTTTTGCAGAGGCTGATCGAGTTTTACGGATCCGATGAGAGAGAAAATGCCGTATCAGCGTAG

Homology

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BLAST of CmoCh01G004870 vs. TrEMBL
Match: A0A067JTG6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19930 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 5.8e-14
Identity = 54/103 (52.43%), Postives = 70/103 (67.96%), Query Frame = 1


Query: 1   MSSIAKKHRMSWKQSTRRAVLRSRYGSRILRARRIHKNGGKAC--SSDVSARLEALQSLI 60
           MSS++K  ++S  ++ RR    S    R  +A+R   NGG+ C   S VS +LEAL++LI
Sbjct: 1   MSSVSKNSKISLGKTPRRR-RTSTCQRRFRKAKRSTINGGRTCFSKSKVSEKLEALKNLI 60

Query: 61  PTQNNGEGHHRRSEELFQETADYIVLLKNQVFVLQRLIEFYGS 102
           P  N   G   ++E+LFQETADYIVLL+ QVFVLQRLIEFYGS
Sbjct: 61  PANN---GETVKAEQLFQETADYIVLLRTQVFVLQRLIEFYGS 99

[Close]

BLAST of CmoCh01G004870 vs. TrEMBL
Match: W9QIE0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_021014 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.7e-13
Identity = 57/115 (49.57%), Postives = 75/115 (65.22%), Query Frame = 1


Query: 1   MSSIAKKHRMSWKQSTRR---AVLRSRYGSRILRA---RRIHKNGGKACSSDVSARLEAL 60
           M S  K  ++S +++ RR     LR R  SR   A   RR   NGG+ CS  VS +LEAL
Sbjct: 1   MKSSTKNQKISARKTRRRRRIGSLRRRPRSRDCCAAVSRRRCDNGGRTCSK-VSDKLEAL 60

Query: 61  QSLIPTQNNGEGHHRRSEELFQETADYIVLLKNQVFVLQRLIEFYGSDERENAVS 110
           ++LIP Q   EG   ++++LFQ+TADYIVLL+ +V +LQ+LIEFYGS E EN VS
Sbjct: 61  KNLIPAQ---EGEIVKADQLFQQTADYIVLLRAKVVILQKLIEFYGSSESENVVS 111

[Close]

BLAST of CmoCh01G004870 vs. TrEMBL
Match: B9SJE1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0525880 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.4e-12
Identity = 56/120 (46.67%), Postives = 75/120 (62.50%), Query Frame = 1


Query: 1   MSSIAKKHRMSWKQST-----RRAVLRSRYGSRILRARRIHKNGGKAC---SSDVSARLE 60
           MSS++K  ++S KQ       R ++L  R    I   RR+ K   ++    SS VS +LE
Sbjct: 1   MSSVSKNSKISMKQKKKTPRKRTSILERRRRRLIHVRRRLCKKAQRSSTCSSSKVSHKLE 60

Query: 61  ALQSLIPTQNNGEGHHRRSEELFQETADYIVLLKNQVFVLQRLIEFYGSD----ERENAV 109
           AL++LIP  N   G   ++++LFQETADYIVLL+ QVFVLQRLI+FYGS     + ENAV
Sbjct: 61  ALKNLIPANN---GEIVKADQLFQETADYIVLLRTQVFVLQRLIQFYGSSTTEADNENAV 117

[Close]

BLAST of CmoCh01G004870 vs. TrEMBL
Match: F6H405_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0068g00510 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.4e-12
Identity = 52/105 (49.52%), Postives = 65/105 (61.90%), Query Frame = 1


Query: 4   IAKKHRMSWKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNN 63
           IAK  R   ++   R   R R GSR         NGG + SS VS +LEAL+SL+P  N 
Sbjct: 6   IAKMRRRRSRRPNARLCCRVRRGSRSFG------NGGDS-SSKVSDKLEALRSLVPVHNG 65

Query: 64  GEGHHRRSEELFQETADYIVLLKNQVFVLQRLIEFYGSDERENAV 109
                 ++++LFQETADYIVLL+ QV +LQRLI+FYGS   ENAV
Sbjct: 66  DI----QADQLFQETADYIVLLRKQVVILQRLIQFYGSGHEENAV 99

[Close]

BLAST of CmoCh01G004870 vs. TrEMBL
Match: A0A103YHA6_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_012550 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.2e-11
Identity = 44/96 (45.83%), Postives = 59/96 (61.46%), Query Frame = 1


Query: 13  KQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHRRSE 72
           K    R  LR   GS+  R R  HKN     SS VS +LEAL++LIP Q         ++
Sbjct: 9   KNFAPRKSLRGSSGSQHRRCRSHHKNSTITTSSSVSDKLEALKNLIPAQEVDGAAPSSAD 68

Query: 73  ELFQETADYIVLLKNQVFVLQRLIEFYGSDERENAV 109
           +LFQETADYI+LL+ QV VLQ+L++FYGS    +++
Sbjct: 69  QLFQETADYILLLRTQVSVLQKLVDFYGSSSSSSSL 104

[Close]

BLAST of CmoCh01G004870 vs. TAIR10
Match: AT3G29370.1 (AT3G29370.1 unknown protein)

HSP 1 Score: 55.8 bits (133), Expect = 1.9e-08
Identity = 40/98 (40.82%), Postives = 53/98 (54.08%), Query Frame = 1


Query: 13  KQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHRRSE 72
           K  T R   R+   SR         NG       V  +L AL+SL+P   N  G    +E
Sbjct: 5   KTQTTRGRRRANVSSRTRVLHTCCGNGSSDGGKTVMEKLLALKSLLPPPVNVGGG--ETE 64

Query: 73  ELFQETADYIVLLKNQVFVLQRLIEFY--GSDERENAV 109
           ELFQETA+YIV L+ QV VL++LIE Y   SD++++ V
Sbjct: 65  ELFQETAEYIVKLRTQVVVLKKLIEIYDNSSDQKKDVV 100

[Close]

BLAST of CmoCh01G004870 vs. TAIR10
Match: AT5G39240.1 (AT5G39240.1 unknown protein)

HSP 1 Score: 54.3 bits (129), Expect = 5.5e-08
Identity = 37/96 (38.54%), Postives = 51/96 (53.12%), Query Frame = 1


Query: 22  RSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHR------------ 81
           RSR G R  +     +  G       S +L+AL+SL+P  +      R            
Sbjct: 8   RSRGGRRTSKKFGNRRTSG---GEKFSEKLQALKSLLPPPSKMTEQSRQDAYVEEDSSVG 67

Query: 82  RSEELFQETADYIVLLKNQVFVLQRLIEFYGSDERE 106
            +E+LFQETADYIV L+ QV VLQ+LIE YGS +++
Sbjct: 68  ETEQLFQETADYIVRLRGQVVVLQKLIEIYGSSDQK 100

[Close]

BLAST of CmoCh01G004870 vs. NCBI nr
Match: gi|659125877|ref|XP_008462902.1| (PREDICTED: transcription factor UPBEAT1-like [Cucumis melo])

HSP 1 Score: 141.0 bits (354), Expect = 1.3e-30
Identity = 76/110 (69.09%), Postives = 94/110 (85.45%), Query Frame = 1


Query: 1   MSSIAKKHRMSWKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPT 60
           MSSI KKHR+ WKQSTRR VL SR     +R  R H+NGG AC+SD+SA+LE+LQSLIP+
Sbjct: 1   MSSIGKKHRIPWKQSTRRTVLPSRK----VRGGRNHQNGGMACASDLSAKLESLQSLIPS 60

Query: 61  QNNGEGHHRRSEELFQETADYIVLLKNQVFVLQRLIEFYGSDERENAVSA 111
           +++ EG  RR+E+LF++TADYIVLLK+QVFVLQRLIEFYGSD+RENAVS+
Sbjct: 61  RSDEEGV-RRAEDLFKQTADYIVLLKSQVFVLQRLIEFYGSDDRENAVSS 105

[Close]

BLAST of CmoCh01G004870 vs. NCBI nr
Match: gi|643714876|gb|KDP27231.1| (hypothetical protein JCGZ_19930 [Jatropha curcas])

HSP 1 Score: 85.1 bits (209), Expect = 8.3e-14
Identity = 54/103 (52.43%), Postives = 70/103 (67.96%), Query Frame = 1


Query: 1   MSSIAKKHRMSWKQSTRRAVLRSRYGSRILRARRIHKNGGKAC--SSDVSARLEALQSLI 60
           MSS++K  ++S  ++ RR    S    R  +A+R   NGG+ C   S VS +LEAL++LI
Sbjct: 1   MSSVSKNSKISLGKTPRRR-RTSTCQRRFRKAKRSTINGGRTCFSKSKVSEKLEALKNLI 60

Query: 61  PTQNNGEGHHRRSEELFQETADYIVLLKNQVFVLQRLIEFYGS 102
           P  N   G   ++E+LFQETADYIVLL+ QVFVLQRLIEFYGS
Sbjct: 61  PANN---GETVKAEQLFQETADYIVLLRTQVFVLQRLIEFYGS 99

[Close]

BLAST of CmoCh01G004870 vs. NCBI nr
Match: gi|645249718|ref|XP_008230869.1| (PREDICTED: uncharacterized protein LOC103330096 [Prunus mume])

HSP 1 Score: 85.1 bits (209), Expect = 8.3e-14
Identity = 54/108 (50.00%), Postives = 70/108 (64.81%), Query Frame = 1


Query: 7   KHRMSWKQSTRRAVLRSRYGSRILRA-RRIHKNGG---KACSSDVSARLEALQSLIPTQN 66
           K  ++ ++ TRR   R R GSR   A RR   NGG   K  S  VSA+LE L+SLI   +
Sbjct: 9   KASLAGRRRTRRISSRRRLGSRACGAPRRSFNNGGRKSKCSSKTVSAKLETLKSLISPSH 68

Query: 67  NGEGHHRRSEELFQETADYIVLLKNQVFVLQRLIEFYGSDERENAVSA 111
            G+    +++ELFQETADYIVLL+ QV +LQRL+E YGS E+EN  +A
Sbjct: 69  AGKT--LKADELFQETADYIVLLRTQVVILQRLVELYGSSEKENIAAA 114

[Close]

BLAST of CmoCh01G004870 vs. NCBI nr
Match: gi|703073730|ref|XP_010089621.1| (hypothetical protein L484_021014 [Morus notabilis])

HSP 1 Score: 83.6 bits (205), Expect = 2.4e-13
Identity = 57/115 (49.57%), Postives = 75/115 (65.22%), Query Frame = 1


Query: 1   MSSIAKKHRMSWKQSTRR---AVLRSRYGSRILRA---RRIHKNGGKACSSDVSARLEAL 60
           M S  K  ++S +++ RR     LR R  SR   A   RR   NGG+ CS  VS +LEAL
Sbjct: 1   MKSSTKNQKISARKTRRRRRIGSLRRRPRSRDCCAAVSRRRCDNGGRTCSK-VSDKLEAL 60

Query: 61  QSLIPTQNNGEGHHRRSEELFQETADYIVLLKNQVFVLQRLIEFYGSDERENAVS 110
           ++LIP Q   EG   ++++LFQ+TADYIVLL+ +V +LQ+LIEFYGS E EN VS
Sbjct: 61  KNLIPAQ---EGEIVKADQLFQQTADYIVLLRAKVVILQKLIEFYGSSESENVVS 111

[Close]

BLAST of CmoCh01G004870 vs. NCBI nr
Match: gi|255570300|ref|XP_002526110.1| (PREDICTED: uncharacterized protein LOC8285064 [Ricinus communis])

HSP 1 Score: 80.5 bits (197), Expect = 2.0e-12
Identity = 56/120 (46.67%), Postives = 75/120 (62.50%), Query Frame = 1


Query: 1   MSSIAKKHRMSWKQST-----RRAVLRSRYGSRILRARRIHKNGGKAC---SSDVSARLE 60
           MSS++K  ++S KQ       R ++L  R    I   RR+ K   ++    SS VS +LE
Sbjct: 1   MSSVSKNSKISMKQKKKTPRKRTSILERRRRRLIHVRRRLCKKAQRSSTCSSSKVSHKLE 60

Query: 61  ALQSLIPTQNNGEGHHRRSEELFQETADYIVLLKNQVFVLQRLIEFYGSD----ERENAV 109
           AL++LIP  N   G   ++++LFQETADYIVLL+ QVFVLQRLI+FYGS     + ENAV
Sbjct: 61  ALKNLIPANN---GEIVKADQLFQETADYIVLLRTQVFVLQRLIQFYGSSTTEADNENAV 117

The following BLAST results are available for this feature:

BLAST of CmoCh01G004870 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh01G004870 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A067JTG6_JATCU	5.8e-14	52.43	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19930 PE=4 SV=1	[more]
W9QIE0_9ROSA	1.7e-13	49.57	Uncharacterized protein OS=Morus notabilis GN=L484_021014 PE=4 SV=1	[more]
B9SJE1_RICCO	1.4e-12	46.67	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0525880 PE=4 SV=1	[more]
F6H405_VITVI	2.4e-12	49.52	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0068g00510 PE=4 SV=...	[more]
A0A103YHA6_CYNCS	1.2e-11	45.83	Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_012550 PE=4 ...	[more]

BLAST of CmoCh01G004870 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G29370.1	1.9e-08	40.82	unknown protein	[more]
AT5G39240.1	5.5e-08	38.54	unknown protein	[more]

BLAST of CmoCh01G004870 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659125877\|ref\|XP_008462902.1\|	1.3e-30	69.09	PREDICTED: transcription factor UPBEAT1-like [Cucumis melo]	[more]
gi\|643714876\|gb\|KDP27231.1\|	8.3e-14	52.43	hypothetical protein JCGZ_19930 [Jatropha curcas]	[more]
gi\|645249718\|ref\|XP_008230869.1\|	8.3e-14	50.00	PREDICTED: uncharacterized protein LOC103330096 [Prunus mume]	[more]
gi\|703073730\|ref\|XP_010089621.1\|	2.4e-13	49.57	hypothetical protein L484_021014 [Morus notabilis]	[more]
gi\|255570300\|ref\|XP_002526110.1\|	2.0e-12	46.67	PREDICTED: uncharacterized protein LOC8285064 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G004870.1	CmoCh01G004870.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33124	FAMILY NOT NAMED	coord: 9..110 score: 2.1
None	No IPR available	PANTHER	PTHR33124:SF9	SUBFAMILY NOT NAMED	coord: 9..110 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh01G004870	CmaCh01G004520	Cucurbita maxima (Rimu)	cmacmoB468
CmoCh01G004870	ClCG07G007410	Watermelon (Charleston Gray)	cmowcgB428
CmoCh01G004870	Lsi07G010050	Bottle gourd (USVL1VR-Ls)	cmolsiB435
CmoCh01G004870	Cla97C07G134790	Watermelon (97103) v2	cmowmbB480
CmoCh01G004870	Bhi01G001651	Wax gourd	cmowgoB0560
CmoCh01G004870	Carg20402	Silver-seed gourd	carcmoB0954

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh01G004870	Cucumber (Gy14) v2	cgybcmoB610
CmoCh01G004870	Melon (DHL92) v3.6.1	cmomedB434
CmoCh01G004870	Melon (DHL92) v3.6.1	cmomedB490
CmoCh01G004870	Cucumber (Chinese Long) v3	cmocucB0564
CmoCh01G004870	Watermelon (97103) v2	cmowmbB469
CmoCh01G004870	Wax gourd	cmowgoB0597
CmoCh01G004870	Cucurbita moschata (Rifu)	cmocmoB204
CmoCh01G004870	Cucurbita moschata (Rifu)	cmocmoB331
CmoCh01G004870	Cucurbita moschata (Rifu)	cmocmoB365
CmoCh01G004870	Cucumber (Gy14) v1	cgycmoB0754
CmoCh01G004870	Cucumber (Gy14) v1	cgycmoB0792
CmoCh01G004870	Cucurbita maxima (Rimu)	cmacmoB258
CmoCh01G004870	Cucurbita maxima (Rimu)	cmacmoB413
CmoCh01G004870	Wild cucumber (PI 183967)	cmocpiB475
CmoCh01G004870	Cucumber (Chinese Long) v2	cmocuB471
CmoCh01G004870	Melon (DHL92) v3.5.1	cmomeB377
CmoCh01G004870	Melon (DHL92) v3.5.1	cmomeB426
CmoCh01G004870	Watermelon (Charleston Gray)	cmowcgB420
CmoCh01G004870	Watermelon (97103) v1	cmowmB442
CmoCh01G004870	Cucurbita pepo (Zucchini)	cmocpeB449
CmoCh01G004870	Cucurbita pepo (Zucchini)	cmocpeB454
CmoCh01G004870	Bottle gourd (USVL1VR-Ls)	cmolsiB429