Cla002296 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla002296
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr7 : 14089213 .. 14089542 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCGATTACGAAGAAACACAGAATACCATGGAAGCAATCAACCAGAAGAACGGTTTTGCGATCGAGGTACGGTTCTCGGATCCTCAGAGCTCGAAGAAACCACAAAAATGGCGGAAAAGCCTGCACTTCAGACGTATCGGCGAAGCTTGAGTCGCTCCAGAGCCTCATTCCAACTCGCAGTGAAGACGGAGGACATCGGAGAGCGGAGGAGTTGTTTCAACAGACGGCGGATTACATCGTGCTGTTGAAGAATCAGGTTTTCGTTCTACAGAGGCTGATCGAGTTTTACGGATCCGGTGATTTAGAAAATGCCGTATCATCGTAG

mRNA sequence

ATGAGTTCGATTACGAAGAAACACAGAATACCATGGAAGCAATCAACCAGAAGAACGGTTTTGCGATCGAGGTACGGTTCTCGGATCCTCAGAGCTCGAAGAAACCACAAAAATGGCGGAAAAGCCTGCACTTCAGACGTATCGGCGAAGCTTGAGTCGCTCCAGAGCCTCATTCCAACTCGCAGTGAAGACGGAGGACATCGGAGAGCGGAGGAGTTGTTTCAACAGACGGCGGATTACATCGTGCTGTTGAAGAATCAGGTTTTCGTTCTACAGAGGCTGATCGAGTTTTACGGATCCGGTGATTTAGAAAATGCCGTATCATCGTAG

Coding sequence (CDS)

ATGAGTTCGATTACGAAGAAACACAGAATACCATGGAAGCAATCAACCAGAAGAACGGTTTTGCGATCGAGGTACGGTTCTCGGATCCTCAGAGCTCGAAGAAACCACAAAAATGGCGGAAAAGCCTGCACTTCAGACGTATCGGCGAAGCTTGAGTCGCTCCAGAGCCTCATTCCAACTCGCAGTGAAGACGGAGGACATCGGAGAGCGGAGGAGTTGTTTCAACAGACGGCGGATTACATCGTGCTGTTGAAGAATCAGGTTTTCGTTCTACAGAGGCTGATCGAGTTTTACGGATCCGGTGATTTAGAAAATGCCGTATCATCGTAG

Protein sequence

MSSITKKHRIPWKQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGSGDLENAVSS

Homology

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BLAST of Cla002296 vs. TrEMBL
Match: A0A067JTG6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19930 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.2e-14
Identity = 53/102 (51.96%), Postives = 71/102 (69.61%), Query Frame = 1


Query: 1   MSSITKKHRIPWKQSTRRTVLRSRYGSRILRARRNHKNGGKAC--TSDVSAKLESLQSLI 60
           MSS++K  +I   ++ RR    S    R  +A+R+  NGG+ C   S VS KLE+L++LI
Sbjct: 1   MSSVSKNSKISLGKTPRRR-RTSTCQRRFRKAKRSTINGGRTCFSKSKVSEKLEALKNLI 60

Query: 61  PTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGS 101
           P  + +G   +AE+LFQ+TADYIVLL+ QVFVLQRLIEFYGS
Sbjct: 61  P--ANNGETVKAEQLFQETADYIVLLRTQVFVLQRLIEFYGS 99

[Close]

BLAST of Cla002296 vs. TrEMBL
Match: W9QIE0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_021014 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.5e-14
Identity = 57/114 (50.00%), Postives = 76/114 (66.67%), Query Frame = 1


Query: 1   MSSITKKHRIPWKQSTRRT---VLRSRYGSRILRA---RRNHKNGGKACTSDVSAKLESL 60
           M S TK  +I  +++ RR     LR R  SR   A   RR   NGG+ C S VS KLE+L
Sbjct: 1   MKSSTKNQKISARKTRRRRRIGSLRRRPRSRDCCAAVSRRRCDNGGRTC-SKVSDKLEAL 60

Query: 61  QSLIPTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGSGDLENAVS 109
           ++LIP  +++G   +A++LFQQTADYIVLL+ +V +LQ+LIEFYGS + EN VS
Sbjct: 61  KNLIP--AQEGEIVKADQLFQQTADYIVLLRAKVVILQKLIEFYGSSESENVVS 111

[Close]

BLAST of Cla002296 vs. TrEMBL
Match: B9SJE1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0525880 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.8e-13
Identity = 54/119 (45.38%), Postives = 74/119 (62.18%), Query Frame = 1


Query: 1   MSSITKKHRIPWKQSTR----RTVLRSRYGSRILRARRN----HKNGGKACTSDVSAKLE 60
           MSS++K  +I  KQ  +    RT +  R   R++  RR      +      +S VS KLE
Sbjct: 1   MSSVSKNSKISMKQKKKTPRKRTSILERRRRRLIHVRRRLCKKAQRSSTCSSSKVSHKLE 60

Query: 61  SLQSLIPTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGS----GDLENAV 108
           +L++LIP  + +G   +A++LFQ+TADYIVLL+ QVFVLQRLI+FYGS     D ENAV
Sbjct: 61  ALKNLIP--ANNGEIVKADQLFQETADYIVLLRTQVFVLQRLIQFYGSSTTEADNENAV 117

[Close]

BLAST of Cla002296 vs. TrEMBL
Match: F6H405_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0068g00510 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.7e-13
Identity = 46/85 (54.12%), Postives = 62/85 (72.94%), Query Frame = 1


Query: 23  SRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSEDGGHRRAEELFQQTADYIV 82
           +R   R+ R  R+  NGG + +S VS KLE+L+SL+P  +   G  +A++LFQ+TADYIV
Sbjct: 19  ARLCCRVRRGSRSFGNGGDS-SSKVSDKLEALRSLVPVHN---GDIQADQLFQETADYIV 78

Query: 83  LLKNQVFVLQRLIEFYGSGDLENAV 108
           LL+ QV +LQRLI+FYGSG  ENAV
Sbjct: 79  LLRKQVVILQRLIQFYGSGHEENAV 99

[Close]

BLAST of Cla002296 vs. TrEMBL
Match: A0A103YHA6_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_012550 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.4e-12
Identity = 44/96 (45.83%), Postives = 62/96 (64.58%), Query Frame = 1


Query: 13  KQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSEDGGH-RRAE 72
           K    R  LR   GS+  R R +HKN     +S VS KLE+L++LIP +  DG     A+
Sbjct: 9   KNFAPRKSLRGSSGSQHRRCRSHHKNSTITTSSSVSDKLEALKNLIPAQEVDGAAPSSAD 68

Query: 73  ELFQQTADYIVLLKNQVFVLQRLIEFYGSGDLENAV 108
           +LFQ+TADYI+LL+ QV VLQ+L++FYGS    +++
Sbjct: 69  QLFQETADYILLLRTQVSVLQKLVDFYGSSSSSSSL 104

[Close]

BLAST of Cla002296 vs. NCBI nr
Match: gi|659125877|ref|XP_008462902.1| (PREDICTED: transcription factor UPBEAT1-like [Cucumis melo])

HSP 1 Score: 161.0 bits (406), Expect = 1.2e-36
Identity = 85/109 (77.98%), Postives = 94/109 (86.24%), Query Frame = 1


Query: 1   MSSITKKHRIPWKQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPT 60
           MSSI KKHRIPWKQSTRRTVL SR     +R  RNH+NGG AC SD+SAKLESLQSLIP+
Sbjct: 1   MSSIGKKHRIPWKQSTRRTVLPSRK----VRGGRNHQNGGMACASDLSAKLESLQSLIPS 60

Query: 61  RSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGSGDLENAVSS 110
           RS++ G RRAE+LF+QTADYIVLLK+QVFVLQRLIEFYGS D ENAVSS
Sbjct: 61  RSDEEGVRRAEDLFKQTADYIVLLKSQVFVLQRLIEFYGSDDRENAVSS 105

[Close]

BLAST of Cla002296 vs. NCBI nr
Match: gi|643714876|gb|KDP27231.1| (hypothetical protein JCGZ_19930 [Jatropha curcas])

HSP 1 Score: 87.4 bits (215), Expect = 1.7e-14
Identity = 53/102 (51.96%), Postives = 71/102 (69.61%), Query Frame = 1


Query: 1   MSSITKKHRIPWKQSTRRTVLRSRYGSRILRARRNHKNGGKAC--TSDVSAKLESLQSLI 60
           MSS++K  +I   ++ RR    S    R  +A+R+  NGG+ C   S VS KLE+L++LI
Sbjct: 1   MSSVSKNSKISLGKTPRRR-RTSTCQRRFRKAKRSTINGGRTCFSKSKVSEKLEALKNLI 60

Query: 61  PTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGS 101
           P  + +G   +AE+LFQ+TADYIVLL+ QVFVLQRLIEFYGS
Sbjct: 61  P--ANNGETVKAEQLFQETADYIVLLRTQVFVLQRLIEFYGS 99

[Close]

BLAST of Cla002296 vs. NCBI nr
Match: gi|703073730|ref|XP_010089621.1| (hypothetical protein L484_021014 [Morus notabilis])

HSP 1 Score: 87.0 bits (214), Expect = 2.2e-14
Identity = 57/114 (50.00%), Postives = 76/114 (66.67%), Query Frame = 1


Query: 1   MSSITKKHRIPWKQSTRRT---VLRSRYGSRILRA---RRNHKNGGKACTSDVSAKLESL 60
           M S TK  +I  +++ RR     LR R  SR   A   RR   NGG+ C S VS KLE+L
Sbjct: 1   MKSSTKNQKISARKTRRRRRIGSLRRRPRSRDCCAAVSRRRCDNGGRTC-SKVSDKLEAL 60

Query: 61  QSLIPTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGSGDLENAVS 109
           ++LIP  +++G   +A++LFQQTADYIVLL+ +V +LQ+LIEFYGS + EN VS
Sbjct: 61  KNLIP--AQEGEIVKADQLFQQTADYIVLLRAKVVILQKLIEFYGSSESENVVS 111

[Close]

BLAST of Cla002296 vs. NCBI nr
Match: gi|645249718|ref|XP_008230869.1| (PREDICTED: uncharacterized protein LOC103330096 [Prunus mume])

HSP 1 Score: 85.9 bits (211), Expect = 4.8e-14
Identity = 53/107 (49.53%), Postives = 70/107 (65.42%), Query Frame = 1


Query: 7   KHRIPWKQSTRRTVLRSRYGSRILRA-RRNHKNGG---KACTSDVSAKLESLQSLIPTRS 66
           K  +  ++ TRR   R R GSR   A RR+  NGG   K  +  VSAKLE+L+SLI + S
Sbjct: 9   KASLAGRRRTRRISSRRRLGSRACGAPRRSFNNGGRKSKCSSKTVSAKLETLKSLI-SPS 68

Query: 67  EDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGSGDLENAVSS 110
             G   +A+ELFQ+TADYIVLL+ QV +LQRL+E YGS + EN  ++
Sbjct: 69  HAGKTLKADELFQETADYIVLLRTQVVILQRLVELYGSSEKENIAAA 114

[Close]

BLAST of Cla002296 vs. NCBI nr
Match: gi|255570300|ref|XP_002526110.1| (PREDICTED: uncharacterized protein LOC8285064 [Ricinus communis])

HSP 1 Score: 82.8 bits (203), Expect = 4.1e-13
Identity = 54/119 (45.38%), Postives = 74/119 (62.18%), Query Frame = 1


Query: 1   MSSITKKHRIPWKQSTR----RTVLRSRYGSRILRARRN----HKNGGKACTSDVSAKLE 60
           MSS++K  +I  KQ  +    RT +  R   R++  RR      +      +S VS KLE
Sbjct: 1   MSSVSKNSKISMKQKKKTPRKRTSILERRRRRLIHVRRRLCKKAQRSSTCSSSKVSHKLE 60

Query: 61  SLQSLIPTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGS----GDLENAV 108
           +L++LIP  + +G   +A++LFQ+TADYIVLL+ QVFVLQRLI+FYGS     D ENAV
Sbjct: 61  ALKNLIP--ANNGEIVKADQLFQETADYIVLLRTQVFVLQRLIQFYGSSTTEADNENAV 117

The following BLAST results are available for this feature:

BLAST of Cla002296 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A067JTG6_JATCU	1.2e-14	51.96	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19930 PE=4 SV=1	[more]
W9QIE0_9ROSA	1.5e-14	50.00	Uncharacterized protein OS=Morus notabilis GN=L484_021014 PE=4 SV=1	[more]
B9SJE1_RICCO	2.8e-13	45.38	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0525880 PE=4 SV=1	[more]
F6H405_VITVI	3.7e-13	54.12	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0068g00510 PE=4 SV=...	[more]
A0A103YHA6_CYNCS	1.4e-12	45.83	Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_012550 PE=4 ...	[more]

BLAST of Cla002296 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659125877\|ref\|XP_008462902.1\|	1.2e-36	77.98	PREDICTED: transcription factor UPBEAT1-like [Cucumis melo]	[more]
gi\|643714876\|gb\|KDP27231.1\|	1.7e-14	51.96	hypothetical protein JCGZ_19930 [Jatropha curcas]	[more]
gi\|703073730\|ref\|XP_010089621.1\|	2.2e-14	50.00	hypothetical protein L484_021014 [Morus notabilis]	[more]
gi\|645249718\|ref\|XP_008230869.1\|	4.8e-14	49.53	PREDICTED: uncharacterized protein LOC103330096 [Prunus mume]	[more]
gi\|255570300\|ref\|XP_002526110.1\|	4.1e-13	45.38	PREDICTED: uncharacterized protein LOC8285064 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU37491	watermelon unigene v2 vs TrEMBL	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla002296	Cla002296.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU37491	WMU37491	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33124	FAMILY NOT NAMED	coord: 22..105 score: 6.3
None	No IPR available	PANTHER	PTHR33124:SF9	SUBFAMILY NOT NAMED	coord: 22..105 score: 6.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla002296	ClCG07G007410	Watermelon (Charleston Gray)	wcgwmB381
Cla002296	Lsi07G010050	Bottle gourd (USVL1VR-Ls)	lsiwmB437

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla002296	Watermelon (97103) v2	wmwmbB171