WMU37491 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU37491
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown protein
Location	Chr7 : 14088974 .. 14089539 (-)
Sequence length	567

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GTTCGATTACGAAGAAACACAGAATACCATGGAAGCAATCAACCAGAAGAACGGTTTTGCGATCGAGGTACGGTTCTCGGATCCTCAGAGCTCGAAGAAACCACAAAAATGGCGGAAAAGCCTGCACTTCAGACGTATCGGCGAAGCTTGAGTCGCTCCAGAGCCTCATTCCAACTCGCAGTGAAGACGGAGGACATCGGAGAGCGGAGGAGTTGTTTCAACAGACGGCGGATTACATCGTGCTGTTGAAGAATCAGGTTTTCGTTCTACAGAGGCTGATCGAGTTTTACGGATCCGGTGATTTAGAAAAATGCCGTATCATCGTAGTTAATTCTTCTTAAATCAAGAAAATAGGAAATTGAGAAGAGGAAAGGTCGGAAGGATCCATAACTTTCTGGAATTTCCGTTTTGCATGCCGTGTTTGGTTGGAGAGAAAGTGAAGGGAATTTGATGATCGAATAGCGAGCGAAATGTAGAATTTCTTCTATCTTTATTTTTTTTTTTTCTTCTTTCTTTCAAATATCCAATACATGAATACAAGTTCCTTTGTTGCTACAAATCAATCAT

Library


Library category	ESTs
watermelon fruit 10d library	3
watermelon fruit 34d library	6
Watermelon normalization and subtraction library	1

Homology

[Close]

BLAST of WMU37491 vs. TAIR10
Match: AT5G39240.1 (AT5G39240.1 unknown protein)

HSP 1 Score: 61.2 bits (147), Expect = 7.7e-10
Identity = 40/94 (42.55%), Postives = 50/94 (53.19%), Query Frame = 3


Query: 60  RSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRS-------------EDGGHR 119
           RSR G R  +   N +  G       S KL++L+SL+P  S             ED    
Sbjct: 8   RSRGGRRTSKKFGNRRTSGG---EKFSEKLQALKSLLPPPSKMTEQSRQDAYVEEDSSVG 67

Query: 120 RAEELFQQTADYIVLLKNQVFVLQRLIEFYGSGD 179
             E+LFQ+TADYIV L+ QV VLQ+LIE YGS D
Sbjct: 68  ETEQLFQETADYIVRLRGQVVVLQKLIEIYGSSD 98

Query: 180  239
           
Sbjct: 128  98

Query: 240  299
           
Sbjct: 188  98

Query: 300  303
           
Sbjct: 248  98

[Close]

BLAST of WMU37491 vs. TAIR10
Match: AT3G29370.1 (AT3G29370.1 unknown protein)

HSP 1 Score: 53.9 bits (128), Expect = 1.2e-07
Identity = 37/93 (39.78%), Postives = 48/93 (51.61%), Query Frame = 3


Query: 33  KQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSEDGGHRRAEE 92
           K  T R   R+   SR         NG       V  KL +L+SL+P     GG    EE
Sbjct: 5   KTQTTRGRRRANVSSRTRVLHTCCGNGSSDGGKTVMEKLLALKSLLPPPVNVGGG-ETEE 64

Query: 93  LFQQTADYIVLLKNQVFVLQRLIEFYGSGDLEK 152
           LFQ+TA+YIV L+ QV VL++LIE Y +   +K
Sbjct: 65  LFQETAEYIVKLRTQVVVLKKLIEIYDNSSDQK 96

Query: 153  212
           
Sbjct: 125  96

Query: 213  272
           
Sbjct: 185  96

Query: 273  312
           
Sbjct: 245  96

[Close]

BLAST of WMU37491 vs. TrEMBL
Match: A0A067JTG6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19930 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.2e-13
Identity = 51/100 (51.00%), Postives = 69/100 (69.00%), Query Frame = 3


Query: 3   SITKKHRIPWKQSTRRTVLRSRYGSRILRARRNHKNGGKAC--TSDVSAKLESLQSLIPT 62
           S++K  +I   ++ RR    S    R  +A+R+  NGG+ C   S VS KLE+L++LIP 
Sbjct: 3   SVSKNSKISLGKTPRRR-RTSTCQRRFRKAKRSTINGGRTCFSKSKVSEKLEALKNLIP- 62

Query: 63  RSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGS 122
            + +G   +AE+LFQ+TADYIVLL+ QVFVLQRLIEFYGS
Sbjct: 63  -ANNGETVKAEQLFQETADYIVLLRTQVFVLQRLIEFYGS 99

Query: 123  182
           
Sbjct: 123  99

Query: 183  242
           
Sbjct: 183  99

Query: 243  297
           
Sbjct: 243  99

[Close]

BLAST of WMU37491 vs. TrEMBL
Match: A0A103YHA6_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_012550 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.2e-12
Identity = 44/89 (49.44%), Postives = 59/89 (66.29%), Query Frame = 3


Query: 33  KQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSEDGGH-RRAE 92
           K    R  LR   GS+  R R +HKN     +S VS KLE+L++LIP +  DG     A+
Sbjct: 9   KNFAPRKSLRGSSGSQHRRCRSHHKNSTITTSSSVSDKLEALKNLIPAQEVDGAAPSSAD 68

Query: 93  ELFQQTADYIVLLKNQVFVLQRLIEFYGS 152
           +LFQ+TADYI+LL+ QV VLQ+L++FYGS
Sbjct: 69  QLFQETADYILLLRTQVSVLQKLVDFYGS 97

Query: 153  212
           
Sbjct: 129  97

Query: 213  272
           
Sbjct: 189  97

Query: 273  297
           
Sbjct: 249  97

[Close]

BLAST of WMU37491 vs. TrEMBL
Match: W9QIE0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_021014 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.1e-12
Identity = 53/108 (49.07%), Postives = 72/108 (66.67%), Query Frame = 3


Query: 3   SITKKHRIPWKQSTRRT---VLRSRYGSRILRA---RRNHKNGGKACTSDVSAKLESLQS 62
           S TK  +I  +++ RR     LR R  SR   A   RR   NGG+ C S VS KLE+L++
Sbjct: 3   SSTKNQKISARKTRRRRRIGSLRRRPRSRDCCAAVSRRRCDNGGRTC-SKVSDKLEALKN 62

Query: 63  LIPTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGSGDLE 122
           LIP  +++G   +A++LFQQTADYIVLL+ +V +LQ+LIEFYGS + E
Sbjct: 63  LIP--AQEGEIVKADQLFQQTADYIVLLRAKVVILQKLIEFYGSSESE 107

Query: 123  182
           
Sbjct: 123  107

Query: 183  242
           
Sbjct: 183  107

Query: 243  302
           
Sbjct: 243  107

Query: 303  309
           
Sbjct: 303  107

[Close]

BLAST of WMU37491 vs. TrEMBL
Match: B9SJE1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0525880 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.6e-11
Identity = 48/110 (43.64%), Postives = 68/110 (61.82%), Query Frame = 3


Query: 3   SITKKHRIPWKQSTR----RTVLRSRYGSRILRARRN----HKNGGKACTSDVSAKLESL 62
           S++K  +I  KQ  +    RT +  R   R++  RR      +      +S VS KLE+L
Sbjct: 3   SVSKNSKISMKQKKKTPRKRTSILERRRRRLIHVRRRLCKKAQRSSTCSSSKVSHKLEAL 62

Query: 63  QSLIPTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGSGDLE 122
           ++LIP  + +G   +A++LFQ+TADYIVLL+ QVFVLQRLI+FYGS   E
Sbjct: 63  KNLIP--ANNGEIVKADQLFQETADYIVLLRTQVFVLQRLIQFYGSSTTE 110

Query: 123  182
           
Sbjct: 123  110

Query: 183  242
           
Sbjct: 183  110

Query: 243  302
           
Sbjct: 243  110

Query: 303  309
           
Sbjct: 303  110

[Close]

BLAST of WMU37491 vs. TrEMBL
Match: F6H405_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0068g00510 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.7e-11
Identity = 43/82 (52.44%), Postives = 59/82 (71.95%), Query Frame = 3


Query: 63  SRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSEDGGHRRAEELFQQTADYIV 122
           +R   R+ R  R+  NGG + +S VS KLE+L+SL+P  +   G  +A++LFQ+TADYIV
Sbjct: 19  ARLCCRVRRGSRSFGNGGDS-SSKVSDKLEALRSLVPVHN---GDIQADQLFQETADYIV 78

Query: 123 LLKNQVFVLQRLIEFYGSGDLE 182
           LL+ QV +LQRLI+FYGSG  E
Sbjct: 79  LLRKQVVILQRLIQFYGSGHEE 96

Query: 183  242
           
Sbjct: 139  96

Query: 243  302
           
Sbjct: 199  96

Query: 303  309
           
Sbjct: 259  96

[Close]

BLAST of WMU37491 vs. NCBI nr
Match: gi|659125877|ref|XP_008462902.1| (PREDICTED: transcription factor UPBEAT1-like [Cucumis melo])

HSP 1 Score: 146.4 bits (368), Expect = 5.2e-32
Identity = 78/102 (76.47%), Postives = 87/102 (85.29%), Query Frame = 3


Query: 3   SITKKHRIPWKQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRS 62
           SI KKHRIPWKQSTRRTVL SR     +R  RNH+NGG AC SD+SAKLESLQSLIP+RS
Sbjct: 3   SIGKKHRIPWKQSTRRTVLPSRK----VRGGRNHQNGGMACASDLSAKLESLQSLIPSRS 62

Query: 63  EDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGSGDLE 122
           ++ G RRAE+LF+QTADYIVLLK+QVFVLQRLIEFYGS D E
Sbjct: 63  DEEGVRRAEDLFKQTADYIVLLKSQVFVLQRLIEFYGSDDRE 100

Query: 123  182
           
Sbjct: 123  100

Query: 183  242
           
Sbjct: 183  100

Query: 243  302
           
Sbjct: 243  100

Query: 303  309
           
Sbjct: 303  100

[Close]

BLAST of WMU37491 vs. NCBI nr
Match: gi|643714876|gb|KDP27231.1| (hypothetical protein JCGZ_19930 [Jatropha curcas])

HSP 1 Score: 80.9 bits (198), Expect = 2.7e-12
Identity = 51/100 (51.00%), Postives = 69/100 (69.00%), Query Frame = 3


Query: 3   SITKKHRIPWKQSTRRTVLRSRYGSRILRARRNHKNGGKAC--TSDVSAKLESLQSLIPT 62
           S++K  +I   ++ RR    S    R  +A+R+  NGG+ C   S VS KLE+L++LIP 
Sbjct: 3   SVSKNSKISLGKTPRRR-RTSTCQRRFRKAKRSTINGGRTCFSKSKVSEKLEALKNLIP- 62

Query: 63  RSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGS 122
            + +G   +AE+LFQ+TADYIVLL+ QVFVLQRLIEFYGS
Sbjct: 63  -ANNGETVKAEQLFQETADYIVLLRTQVFVLQRLIEFYGS 99

Query: 123  182
           
Sbjct: 123  99

Query: 183  242
           
Sbjct: 183  99

Query: 243  297
           
Sbjct: 243  99

[Close]

BLAST of WMU37491 vs. NCBI nr
Match: gi|645249718|ref|XP_008230869.1| (PREDICTED: uncharacterized protein LOC103330096 [Prunus mume])

HSP 1 Score: 80.5 bits (197), Expect = 3.5e-12
Identity = 52/102 (50.98%), Postives = 67/102 (65.69%), Query Frame = 3


Query: 15  KHRIPWKQSTRRTVLRSRYGSRILRA-RRNHKNGG---KACTSDVSAKLESLQSLIPTRS 74
           K  +  ++ TRR   R R GSR   A RR+  NGG   K  +  VSAKLE+L+SLI + S
Sbjct: 9   KASLAGRRRTRRISSRRRLGSRACGAPRRSFNNGGRKSKCSSKTVSAKLETLKSLI-SPS 68

Query: 75  EDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGSGDLE 134
             G   +A+ELFQ+TADYIVLL+ QV +LQRL+E YGS + E
Sbjct: 69  HAGKTLKADELFQETADYIVLLRTQVVILQRLVELYGSSEKE 109

Query: 135  194
           
Sbjct: 129  109

Query: 195  254
           
Sbjct: 189  109

Query: 255  309
           
Sbjct: 249  109

[Close]

BLAST of WMU37491 vs. NCBI nr
Match: gi|764614664|ref|XP_011467892.1| (PREDICTED: uncharacterized protein LOC105352447 [Fragaria vesca subsp. vesca])

HSP 1 Score: 79.7 bits (195), Expect = 5.9e-12
Identity = 49/96 (51.04%), Postives = 61/96 (63.54%), Query Frame = 3


Query: 48  RTVLRSRYGSRILRARRNHKNGGKA-------CTSDVSAKLESLQSLIPT-RSEDGGHRR 107
           R  LRS  G     ARR+  NGGK        C+  VSAKLE+L++LIP  +S   G  +
Sbjct: 19  RRRLRSTRGCCPRSARRSFNNGGKGGGRKAVKCSKVVSAKLETLKNLIPNGKSSSAGAVQ 78

Query: 108 AEELFQQTADYIVLLKNQVFVLQRLIEFYGSGDLEK 167
           A++LFQ TADYIVLL+ QV +LQ+LIE YGS   EK
Sbjct: 79  ADKLFQDTADYIVLLRTQVVILQKLIEVYGSSSTEK 114

Query: 168  227
           
Sbjct: 139  114

Query: 228  287
           
Sbjct: 199  114

Query: 288  312
           
Sbjct: 259  114

[Close]

BLAST of WMU37491 vs. NCBI nr
Match: gi|976925159|gb|KVI09071.1| (hypothetical protein Ccrd_012550 [Cynara cardunculus var. scolymus])

HSP 1 Score: 77.4 bits (189), Expect = 2.9e-11
Identity = 44/89 (49.44%), Postives = 59/89 (66.29%), Query Frame = 3


Query: 33  KQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSEDGGH-RRAE 92
           K    R  LR   GS+  R R +HKN     +S VS KLE+L++LIP +  DG     A+
Sbjct: 9   KNFAPRKSLRGSSGSQHRRCRSHHKNSTITTSSSVSDKLEALKNLIPAQEVDGAAPSSAD 68

Query: 93  ELFQQTADYIVLLKNQVFVLQRLIEFYGS 152
           +LFQ+TADYI+LL+ QV VLQ+L++FYGS
Sbjct: 69  QLFQETADYILLLRTQVSVLQKLVDFYGS 97

Query: 153  212
           
Sbjct: 129  97

Query: 213  272
           
Sbjct: 189  97

Query: 273  297
           
Sbjct: 249  97

The following BLAST results are available for this feature:

BLAST of WMU37491 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G39240.1	7.7e-10	42.55	unknown protein	[more]
AT3G29370.1	1.2e-07	39.78	unknown protein	[more]

BLAST of WMU37491 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A067JTG6_JATCU	2.2e-13	51.00	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19930 PE=4 SV=1	[more]
A0A103YHA6_CYNCS	3.2e-12	49.44	Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_012550 PE=4 ...	[more]
W9QIE0_9ROSA	4.1e-12	49.07	Uncharacterized protein OS=Morus notabilis GN=L484_021014 PE=4 SV=1	[more]
B9SJE1_RICCO	1.6e-11	43.64	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0525880 PE=4 SV=1	[more]
F6H405_VITVI	2.7e-11	52.44	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0068g00510 PE=4 SV=...	[more]

BLAST of WMU37491 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659125877\|ref\|XP_008462902.1\|	5.2e-32	76.47	PREDICTED: transcription factor UPBEAT1-like [Cucumis melo]	[more]
gi\|643714876\|gb\|KDP27231.1\|	2.7e-12	51.00	hypothetical protein JCGZ_19930 [Jatropha curcas]	[more]
gi\|645249718\|ref\|XP_008230869.1\|	3.5e-12	50.98	PREDICTED: uncharacterized protein LOC103330096 [Prunus mume]	[more]
gi\|764614664\|ref\|XP_011467892.1\|	5.9e-12	51.04	PREDICTED: uncharacterized protein LOC105352447 [Fragaria vesca subsp. vesca]	[more]
gi\|976925159\|gb\|KVI09071.1\|	2.9e-11	49.44	hypothetical protein Ccrd_012550 [Cynara cardunculus var. scolymus]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla002296	Cla002296	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S1_0049425	S1_0049425	EST
S1_0154507	S1_0154507	EST
S1_0154653	S1_0154653	EST
S4_0113454	S4_0113454	EST
S4_0136653	S4_0136653	EST
S4_0140959	S4_0140959	EST
S4_0167836	S4_0167836	EST
S4_0172970	S4_0172970	EST
S4_0174458	S4_0174458	EST
WMN34E12	WMN34E12	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33124	FAMILY NOT NAMED	coord: 21..111 score: 2.8
None	No IPR available	PANTHER	PTHR33124:SF9	SUBFAMILY NOT NAMED	coord: 21..111 score: 2.8