Lsi07G009280 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi07G009280
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionLipid transfer protein
Locationchr07 : 11224806 .. 11225120 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAATTTTCCTATCACAGTTGTTTGCATTTTTGTGGTGGCGACCACGGTGGCGCTTTTCAACTGCGCTCGTCCGGTGGCTGCTCAGACAACATGCAACCCTTCGCAGCTAGGTATACCATGTGGAGCAGCATTTTTCTCATCGTCGACGCCCAGTCGCGATTGTTGCAATAAGTTGAGGGAGCAACAACCATGCTACTGTACTTATCTCCACGATCCAAATTTGAAGAATTTGGTGGATTCTCCTGCCGCTAAAAGGATTGCTAAAGCCTGCAATATTACCTTCCCAAGTCAGGCTGAGTGCCCTAACTAG

mRNA sequence

ATGAAGAATTTTCCTATCACAGTTGTTTGCATTTTTGTGGTGGCGACCACGGTGGCGCTTTTCAACTGCGCTCGTCCGGTGGCTGCTCAGACAACATGCAACCCTTCGCAGCTAGGTATACCATGTGGAGCAGCATTTTTCTCATCGTCGACGCCCAGTCGCGATTGTTGCAATAAGTTGAGGGAGCAACAACCATGCTACTGTACTTATCTCCACGATCCAAATTTGAAGAATTTGGTGGATTCTCCTGCCGCTAAAAGGATTGCTAAAGCCTGCAATATTACCTTCCCAAGTCAGGCTGAGTGCCCTAACTAG

Coding sequence (CDS)

ATGAAGAATTTTCCTATCACAGTTGTTTGCATTTTTGTGGTGGCGACCACGGTGGCGCTTTTCAACTGCGCTCGTCCGGTGGCTGCTCAGACAACATGCAACCCTTCGCAGCTAGGTATACCATGTGGAGCAGCATTTTTCTCATCGTCGACGCCCAGTCGCGATTGTTGCAATAAGTTGAGGGAGCAACAACCATGCTACTGTACTTATCTCCACGATCCAAATTTGAAGAATTTGGTGGATTCTCCTGCCGCTAAAAGGATTGCTAAAGCCTGCAATATTACCTTCCCAAGTCAGGCTGAGTGCCCTAACTAG

Protein sequence

MKNFPITVVCIFVVATTVALFNCARPVAAQTTCNPSQLGIPCGAAFFSSSTPSRDCCNKLREQQPCYCTYLHDPNLKNLVDSPAAKRIAKACNITFPSQAECPN
Homology
[Close]
BLAST of Lsi07G009280 vs. Swiss-Prot
Match: NLTP_VIGUN (Probable non-specific lipid-transfer protein AKCS9 OS=Vigna unguiculata PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.6e-14
Identity = 42/94 (44.68%), Postives = 58/94 (61.70%), Query Frame = 1 

Query: 6  ITVVCIFVVATTVALFNC-ARPVAAQTTCNPSQLGIPCGAAFFSSSTPSRDCCNKLREQQ 65
          ++VVC  VV   VALF     PVA   TCNP++L   C  A    S PS  CC+KL+ Q+
Sbjct: 9  MSVVCAVVV---VALFLIDVGPVAEAVTCNPTELS-SCVPAITGGSKPSSTCCSKLKVQE 68

Query: 66 PCYCTYLHDPNLKNLVDSPAAKRIAKACNITFPS 99
          PC C Y+ +P+LK  V+SP AK++   C +T+P+
Sbjct: 69 PCLCNYIKNPSLKQYVNSPGAKKVLSNCGVTYPN 98

[Close]
BLAST of Lsi07G009280 vs. Swiss-Prot
Match: NLTP2_APIGA (Non-specific lipid-transfer protein 2 OS=Apium graveolens var. rapaceum PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.3e-13
Identity = 34/63 (53.97%), Postives = 44/63 (69.84%), Query Frame = 1 

Query: 32 TCNPSQLGIPCGAAFFSSSTPSRDCCNKLREQQPCYCTYLHDPNLKNLVDSPAAKRIAKA 91
          TC+  QL  PC AA   ++ PS  CCNKL+EQ+PC C YL DPNLKN V+SP A++ A +
Sbjct: 2  TCSAVQLS-PCLAAITKNTPPSAACCNKLKEQKPCLCGYLKDPNLKNYVNSPGARKTASS 61

Query: 92 CNI 95
          C +
Sbjct: 62 CGV 63

[Close]
BLAST of Lsi07G009280 vs. Swiss-Prot
Match: NLTP2_PRUAR (Non-specific lipid-transfer protein 2 OS=Prunus armeniaca PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 5.2e-10
Identity = 29/66 (43.94%), Postives = 40/66 (60.61%), Query Frame = 1 

Query: 32 TCNPSQLGIPCGAAFFSSSTPSRDCCNKLREQQPCYCTYLHDPNLKNLVDSPAAKRIAKA 91
          TC+P QL  PC     S +     CC KLREQ+PC C YL +P+L+  V+SP A+++A  
Sbjct: 2  TCSPVQLS-PCLGPINSGAPSPTTCCQKLREQRPCLCGYLKNPSLRQYVNSPNARKLASN 61

Query: 92 CNITFP 98
          C +  P
Sbjct: 62 CGVPVP 66

[Close]
BLAST of Lsi07G009280 vs. Swiss-Prot
Match: NLT2P_WHEAT (Non-specific lipid-transfer protein 2P OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.4e-09
Identity = 26/65 (40.00%), Postives = 36/65 (55.38%), Query Frame = 1 

Query: 33 CNPSQLGIPCGAAFFSSSTPSRDCCNKLREQQPCYCTYLHDPNLKNLVDSPAAKRIAKAC 92
          C  SQL + C +A  S + PS +CC  LR QQPC+C Y  DP     + SP A+   ++C
Sbjct: 2  CQASQLAV-CASAILSGAKPSGECCGNLRAQQPCFCQYAKDPTYGQYIRSPHARDTLQSC 61

Query: 93 NITFP 98
           +  P
Sbjct: 62 GLAVP 65

[Close]
BLAST of Lsi07G009280 vs. Swiss-Prot
Match: NLTP2_HORVU (Probable non-specific lipid-transfer protein OS=Hordeum vulgare GN=LTP2 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.3e-08
Identity = 30/87 (34.48%), Postives = 40/87 (45.98%), Query Frame = 1 

Query: 11  IFVVATTVALFNCARPVAAQTTCNPSQLGIPCGAAFFSSSTPSRDCCNKLREQQPCYCTY 70
           + V+   V          A   C P+QL + C +A    + PS +CC  LR QQ C C Y
Sbjct: 15  VAVMMVMVVTLAAGADAGAGAACEPAQLAV-CASAILGGTKPSGECCGNLRAQQGCLCQY 74

Query: 71  LHDPNLKNLVDSPAAKRIAKACNITFP 98
           + DPN  + V SP A+     C I  P
Sbjct: 75  VKDPNYGHYVSSPHARDTLNLCGIPVP 100

[Close]
BLAST of Lsi07G009280 vs. TrEMBL
Match: A0A0A0KZL4_CUCSA (Putative lipid transfer protein family protein OS=Cucumis sativus GN=Csa_4G146240 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 4.6e-29
Identity = 69/103 (66.99%), Postives = 83/103 (80.58%), Query Frame = 1 

Query: 1   MKNFPIT-VVCIFVVATTVALFNCARPVAAQTTCNPSQLGIPCGAAFFSSSTPSRDCCNK 60
           MKNFPIT VVCIFVVATTVAL N A PV AQ  C+PSQL   C AAFF   TPS+ CCNK
Sbjct: 1   MKNFPITIVVCIFVVATTVALLNGAPPVVAQVECDPSQLS-SCTAAFFGM-TPSQTCCNK 60

Query: 61  LREQQPCYCTYLHDPNLKNLVDSPAAKRIAKACNITFPSQAEC 103
           LRE QPCYC Y++DP+L++ V+S AA+RIAK+CNI+ P++A+C
Sbjct: 61  LREAQPCYCEYINDPDLRSFVNSSAARRIAKSCNISLPTEADC 101

[Close]
BLAST of Lsi07G009280 vs. TrEMBL
Match: S4TID2_GOSHI (Lipid transfer protein OS=Gossypium hirsutum GN=LTP9 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.8e-15
Identity = 43/92 (46.74%), Postives = 62/92 (67.39%), Query Frame = 1 

Query: 6  ITVVCIFVVATTVALFNCARPVAAQTTCNPSQLGIPCGAAFFSSSTPSRDCCNKLREQQP 65
          ++ V + VVA +V LF+    +A   TCNP++L  PC +AF SSS PS  CC+KL+ Q+P
Sbjct: 4  VSFVALCVVALSVVLFSGESRMAEAVTCNPTELS-PCLSAFTSSSPPSAACCSKLKAQKP 63

Query: 66 CYCTYLHDPNLKNLVDSPAAKRIAKACNITFP 98
          C C Y+ +P+LK  V+SP AK +A  C +T+P
Sbjct: 64 CLCGYIKNPSLKQYVNSPNAKNVASTCGVTYP 94

[Close]
BLAST of Lsi07G009280 vs. TrEMBL
Match: V4T361_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013191mg PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 6.4e-15
Identity = 47/98 (47.96%), Postives = 60/98 (61.22%), Query Frame = 1 

Query: 1  MKNFPITVVCIFVVATTVALFNCARP-VAAQTTCNPSQLGIPCGAAFFSSSTPSRDCCNK 60
          MK         FVVA  VA+   ++  VA   TCNP++L  PC  A  SS+ PSR CCNK
Sbjct: 1  MKKVSSVAAVGFVVALLVAVAALSQVNVAEAATCNPTELS-PCAPAITSSAPPSRACCNK 60

Query: 61 LREQQPCYCTYLHDPNLKNLVDSPAAKRIAKACNITFP 98
          +R+Q+PC C +L DPNLK  V+SP AKR+   C I +P
Sbjct: 61 MRQQRPCLCGFLRDPNLKQYVNSPNAKRVIATCGIPYP 97

[Close]
BLAST of Lsi07G009280 vs. TrEMBL
Match: A0A0S3T7G1_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.11G005400 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 8.4e-15
Identity = 48/97 (49.48%), Postives = 61/97 (62.89%), Query Frame = 1 

Query: 2  KNFPITVVCIFVVATTVALFNCARPVAAQTTCNPSQLGIPCGAAFFSSSTPSRDCCNKLR 61
          K F   VV + VVA  VA      P A   TC+P +L  PC AA  SSS PS  CC K+R
Sbjct: 3  KVFVFAVVVVAVVAMEVA------PTAEGVTCSPVELS-PCLAAITSSSPPSTLCCQKVR 62

Query: 62 EQQPCYCTYLHDPNLKNLVDSPAAKRIAKACNITFPS 99
          EQ+PC C YL +P+LKN V+SP ++R+A +C I FP+
Sbjct: 63 EQRPCLCGYLQNPSLKNYVNSPGSRRVATSCGIPFPT 92

[Close]
BLAST of Lsi07G009280 vs. TrEMBL
Match: A0A0D2TTY3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G057100 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.4e-14
Identity = 43/92 (46.74%), Postives = 57/92 (61.96%), Query Frame = 1 

Query: 6  ITVVCIFVVATTVALFNCARPVAAQTTCNPSQLGIPCGAAFFSSSTPSRDCCNKLREQQP 65
          ++ V + VVA  V LF+     A   TCNP +L  PC  A  SSS PS  CC+KL+ QQP
Sbjct: 4  VSFVALCVVALAVVLFSGESRTAEAVTCNPVELA-PCSPALTSSSPPSSACCSKLKAQQP 63

Query: 66 CYCTYLHDPNLKNLVDSPAAKRIAKACNITFP 98
          C C YL +P+LK  V+SP AK++A  C + +P
Sbjct: 64 CLCGYLKNPSLKQYVNSPNAKKVASTCGVPYP 94

[Close]
BLAST of Lsi07G009280 vs. TAIR10
Match: AT1G48750.1 (AT1G48750.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 82.8 bits (203), Expect = 1.4e-16
Identity = 42/93 (45.16%), Postives = 56/93 (60.22%), Query Frame = 1 

Query: 6  ITVVCIFVVATTVALFNCARPVAAQTTCNPSQLGIPCGAAFFSSSTPSRDCCNKLREQQP 65
          + V+ + V+A   A+     PVA   TC+P QL   C AA  SSS PS  CC KLREQQP
Sbjct: 2  VKVMWVSVLALAAAILLLTVPVAEGVTCSPMQLA-SCAAAMTSSSPPSEACCTKLREQQP 61

Query: 66 CYCTYLHDPNLKNLVDSPAAKRIAKACNITFPS 99
          C C Y+ +P L+  V SP A++++ +C I  PS
Sbjct: 62 CLCGYMRNPTLRQYVSSPNARKVSNSCKIPSPS 93

[Close]
BLAST of Lsi07G009280 vs. TAIR10
Match: AT3G18280.1 (AT3G18280.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 77.8 bits (190), Expect = 4.4e-15
Identity = 37/91 (40.66%), Postives = 56/91 (61.54%), Query Frame = 1 

Query: 7  TVVCIFVVATTVALFNCARPVAAQTTCNPSQLGIPCGAAFFSSSTPSRDCCNKLREQQPC 66
          T+V +F +A  + +     P A   TC+P QL  PC  A  SSS PS  CC KL+EQ+PC
Sbjct: 7  TMVSLFALAAVLLMI--LAPAAEAVTCSPMQLS-PCATAITSSSPPSALCCAKLKEQRPC 66

Query: 67 YCTYLHDPNLKNLVDSPAAKRIAKACNITFP 98
           C Y+ +P+L+  V +P A++++K+C +  P
Sbjct: 67 LCGYMRNPSLRRFVSTPNARKVSKSCKLPIP 94

[Close]
BLAST of Lsi07G009280 vs. TAIR10
Match: AT1G73780.1 (AT1G73780.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 70.1 bits (170), Expect = 9.2e-13
Identity = 39/93 (41.94%), Postives = 52/93 (55.91%), Query Frame = 1 

Query: 5  PITVVCIFVVATTVALFNCARPVAAQTTCNPSQLGIPCGAAFFSSSTPSRDCCNKLREQQ 64
          P+   C  ++   VA  N    VAA   CNP+QL  PC       S PS  CC+K++EQQ
Sbjct: 8  PVFFTCTILLILIVAQEN---RVAAVDPCNPAQLS-PCLETIMKGSEPSDLCCSKVKEQQ 67

Query: 65 PCYCTYLHDPNLKNLVDSPAAKRIAKACNITFP 98
           C C YL +PN K+ ++SP AK IA  C+  +P
Sbjct: 68 HCICQYLKNPNFKSFLNSPNAKIIATDCHCPYP 96

[Close]
BLAST of Lsi07G009280 vs. TAIR10
Match: AT5G38170.1 (AT5G38170.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 65.9 bits (159), Expect = 1.7e-11
Identity = 28/70 (40.00%), Postives = 38/70 (54.29%), Query Frame = 1 

Query: 29  AQTTCNPSQLGIPCGAAFFSSSTPSRDCCNKLREQQPCYCTYLHDPNLKNLVDSPAAKRI 88
           A  TC+  QL   C     +   PS +CC KL+EQQPC+CTY+ DP     V S  AK+ 
Sbjct: 34  ADVTCDAVQLS-SCATPMLTGVPPSTECCGKLKEQQPCFCTYIKDPRYSQYVGSANAKKT 93

Query: 89  AKACNITFPS 99
              C + +P+
Sbjct: 94  LATCGVPYPT 102

[Close]
BLAST of Lsi07G009280 vs. TAIR10
Match: AT5G38195.1 (AT5G38195.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 65.5 bits (158), Expect = 2.3e-11
Identity = 35/98 (35.71%), Postives = 59/98 (60.20%), Query Frame = 1 

Query: 1  MKNFPITVVCIFVVATTVALFNCARPVAAQTTCNPSQLGIPCGAAFFSSSTPSRDCCNKL 60
          MK   ITVV I V+++ + + +        ++C P++L +PC  A  +   P++DCC+KL
Sbjct: 4  MKLMVITVV-IVVMSSPILIKS-----EVSSSCIPTEL-MPCLPAMTTGGQPTKDCCDKL 63

Query: 61 REQQPCYCTYLHDPNLKNLVDSPAAKRIAKACNITFPS 99
           EQ+ C C Y+++P     V SP A+++ + CNI +PS
Sbjct: 64 IEQKECLCGYINNPLYSTFVSSPVARKVLEVCNIPYPS 94

[Close]
BLAST of Lsi07G009280 vs. NCBI nr
Match: gi|659086711|ref|XP_008444079.1| (PREDICTED: non-specific lipid-transfer protein 2P-like [Cucumis melo])

HSP 1 Score: 137.9 bits (346), Expect = 1.0e-29
Identity = 68/105 (64.76%), Postives = 80/105 (76.19%), Query Frame = 1 

Query: 1   MKNFPIT-VVCIFVVATTVALFNCARPVAAQTTCNPSQLGIPCGAAFFSSSTPSRDCCNK 60
           MKNFPIT VVCIFVVATTVAL N   PVAAQT C+ SQL   C  AF     P+++CC K
Sbjct: 1   MKNFPITLVVCIFVVATTVALLNGPPPVAAQTVCDASQLS-SCAPAFLFGGNPNQECCTK 60

Query: 61  LREQQPCYCTYLHDPNLKNLVDSPAAKRIAKACNITFPSQAECPN 105
           LR +QPCYC Y  DPNL+N V+S AA+R+A+ACNITFP+ A+CPN
Sbjct: 61  LRAEQPCYCEYFGDPNLQNFVNSDAARRVAEACNITFPTMADCPN 104

[Close]
BLAST of Lsi07G009280 vs. NCBI nr
Match: gi|778692189|ref|XP_011653423.1| (PREDICTED: non-specific lipid-transfer protein 2-like [Cucumis sativus])

HSP 1 Score: 135.2 bits (339), Expect = 6.6e-29
Identity = 69/103 (66.99%), Postives = 83/103 (80.58%), Query Frame = 1 

Query: 1   MKNFPIT-VVCIFVVATTVALFNCARPVAAQTTCNPSQLGIPCGAAFFSSSTPSRDCCNK 60
           MKNFPIT VVCIFVVATTVAL N A PV AQ  C+PSQL   C AAFF   TPS+ CCNK
Sbjct: 1   MKNFPITIVVCIFVVATTVALLNGAPPVVAQVECDPSQLS-SCTAAFFGM-TPSQTCCNK 60

Query: 61  LREQQPCYCTYLHDPNLKNLVDSPAAKRIAKACNITFPSQAEC 103
           LRE QPCYC Y++DP+L++ V+S AA+RIAK+CNI+ P++A+C
Sbjct: 61  LREAQPCYCEYINDPDLRSFVNSSAARRIAKSCNISLPTEADC 101

[Close]
BLAST of Lsi07G009280 vs. NCBI nr
Match: gi|440494829|gb|AGC08429.1| (lipid transfer protein [Gossypium hirsutum])

HSP 1 Score: 89.0 bits (219), Expect = 5.4e-15
Identity = 43/92 (46.74%), Postives = 62/92 (67.39%), Query Frame = 1 

Query: 6  ITVVCIFVVATTVALFNCARPVAAQTTCNPSQLGIPCGAAFFSSSTPSRDCCNKLREQQP 65
          ++ V + VVA +V LF+    +A   TCNP++L  PC +AF SSS PS  CC+KL+ Q+P
Sbjct: 4  VSFVALCVVALSVVLFSGESRMAEAVTCNPTELS-PCLSAFTSSSPPSAACCSKLKAQKP 63

Query: 66 CYCTYLHDPNLKNLVDSPAAKRIAKACNITFP 98
          C C Y+ +P+LK  V+SP AK +A  C +T+P
Sbjct: 64 CLCGYIKNPSLKQYVNSPNAKNVASTCGVTYP 94

[Close]
BLAST of Lsi07G009280 vs. NCBI nr
Match: gi|567876273|ref|XP_006430726.1| (hypothetical protein CICLE_v10013191mg [Citrus clementina])

HSP 1 Score: 88.2 bits (217), Expect = 9.2e-15
Identity = 47/98 (47.96%), Postives = 60/98 (61.22%), Query Frame = 1 

Query: 1  MKNFPITVVCIFVVATTVALFNCARP-VAAQTTCNPSQLGIPCGAAFFSSSTPSRDCCNK 60
          MK         FVVA  VA+   ++  VA   TCNP++L  PC  A  SS+ PSR CCNK
Sbjct: 1  MKKVSSVAAVGFVVALLVAVAALSQVNVAEAATCNPTELS-PCAPAITSSAPPSRACCNK 60

Query: 61 LREQQPCYCTYLHDPNLKNLVDSPAAKRIAKACNITFP 98
          +R+Q+PC C +L DPNLK  V+SP AKR+   C I +P
Sbjct: 61 MRQQRPCLCGFLRDPNLKQYVNSPNAKRVIATCGIPYP 97

[Close]
BLAST of Lsi07G009280 vs. NCBI nr
Match: gi|965615765|dbj|BAU00915.1| (hypothetical protein VIGAN_11005400 [Vigna angularis var. angularis])

HSP 1 Score: 87.8 bits (216), Expect = 1.2e-14
Identity = 48/97 (49.48%), Postives = 61/97 (62.89%), Query Frame = 1 

Query: 2  KNFPITVVCIFVVATTVALFNCARPVAAQTTCNPSQLGIPCGAAFFSSSTPSRDCCNKLR 61
          K F   VV + VVA  VA      P A   TC+P +L  PC AA  SSS PS  CC K+R
Sbjct: 3  KVFVFAVVVVAVVAMEVA------PTAEGVTCSPVELS-PCLAAITSSSPPSTLCCQKVR 62

Query: 62 EQQPCYCTYLHDPNLKNLVDSPAAKRIAKACNITFPS 99
          EQ+PC C YL +P+LKN V+SP ++R+A +C I FP+
Sbjct: 63 EQRPCLCGYLQNPSLKNYVNSPGSRRVATSCGIPFPT 92

The following BLAST results are available for this feature:
BLAST of Lsi07G009280 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NLTP_VIGUN4.6e-1444.68Probable non-specific lipid-transfer protein AKCS9 OS=Vigna unguiculata PE=2 SV=... [more]
NLTP2_APIGA2.3e-1353.97Non-specific lipid-transfer protein 2 OS=Apium graveolens var. rapaceum PE=1 SV=... [more]
NLTP2_PRUAR5.2e-1043.94Non-specific lipid-transfer protein 2 OS=Prunus armeniaca PE=1 SV=1[more]
NLT2P_WHEAT4.4e-0940.00Non-specific lipid-transfer protein 2P OS=Triticum aestivum PE=1 SV=1[more]
NLTP2_HORVU1.3e-0834.48Probable non-specific lipid-transfer protein OS=Hordeum vulgare GN=LTP2 PE=2 SV=... [more]
BLAST of Lsi07G009280 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZL4_CUCSA4.6e-2966.99Putative lipid transfer protein family protein OS=Cucumis sativus GN=Csa_4G14624... [more]
S4TID2_GOSHI3.8e-1546.74Lipid transfer protein OS=Gossypium hirsutum GN=LTP9 PE=4 SV=1[more]
V4T361_9ROSI6.4e-1547.96Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013191mg PE=4 SV=1[more]
A0A0S3T7G1_PHAAN8.4e-1549.48Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.11G005400 PE=... [more]
A0A0D2TTY3_GOSRA2.4e-1446.74Uncharacterized protein OS=Gossypium raimondii GN=B456_008G057100 PE=4 SV=1[more]
BLAST of Lsi07G009280 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G48750.11.4e-1645.16 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi... [more]
AT3G18280.14.4e-1540.66 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi... [more]
AT1G73780.19.2e-1341.94 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi... [more]
AT5G38170.11.7e-1140.00 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi... [more]
AT5G38195.12.3e-1135.71 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi... [more]
BLAST of Lsi07G009280 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659086711|ref|XP_008444079.1|1.0e-2964.76PREDICTED: non-specific lipid-transfer protein 2P-like [Cucumis melo][more]
gi|778692189|ref|XP_011653423.1|6.6e-2966.99PREDICTED: non-specific lipid-transfer protein 2-like [Cucumis sativus][more]
gi|440494829|gb|AGC08429.1|5.4e-1546.74lipid transfer protein [Gossypium hirsutum][more]
gi|567876273|ref|XP_006430726.1|9.2e-1547.96hypothetical protein CICLE_v10013191mg [Citrus clementina][more]
gi|965615765|dbj|BAU00915.1|1.2e-1449.48hypothetical protein VIGAN_11005400 [Vigna angularis var. angularis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR016140Bifunc_inhib/LTP/seed_store
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006869 lipid transport
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi07G009280.1Lsi07G009280.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domainPFAMPF14368LTP_2coord: 14..102
score: 9.
IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domainSMARTSM00499aai_6coord: 33..102
score: 0.
IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domainunknownSSF47699Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumincoord: 33..98
score: 4.4
NoneNo IPR availableGENE3DG3DSA:1.10.110.10coord: 32..98
score: 3.3
NoneNo IPR availablePANTHERPTHR33214FAMILY NOT NAMEDcoord: 1..102
score: 1.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi07G009280Cla010773Watermelon (97103) v1lsiwmB447
Lsi07G009280Cla97C07G143390Watermelon (97103) v2lsiwmbB409
Lsi07G009280Bhi01G001753Wax gourdlsiwgoB556
Lsi07G009280Cp4.1LG03g15200Cucurbita pepo (Zucchini)cpelsiB517
Lsi07G009280CsGy4G009910Cucumber (Gy14) v2cgyblsiB286
Lsi07G009280CsaV3_4G010450Cucumber (Chinese Long) v3cuclsiB332
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi07G009280Cucurbita maxima (Rimu)cmalsiB448
Lsi07G009280Cucurbita moschata (Rifu)cmolsiB245
Lsi07G009280Cucurbita pepo (Zucchini)cpelsiB475
Lsi07G009280Wild cucumber (PI 183967)cpilsiB312
Lsi07G009280Cucumber (Chinese Long) v2culsiB313
Lsi07G009280Melon (DHL92) v3.5.1lsimeB448
Lsi07G009280Watermelon (Charleston Gray)lsiwcgB410
Lsi07G009280Melon (DHL92) v3.6.1lsimedB466
Lsi07G009280Silver-seed gourdcarlsiB701
Lsi07G009280Wax gourdlsiwgoB564