Lsi07G001740 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi07G001740
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial
Location	chr07 : 1856369 .. 1859709 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCGAAATATTCTCAAAATCTCGAAATTTCTCAAAATTGGGGGAAAACAAAATTTTTCTCAATCAATCTTTTAAGACCCTCGAAACCTCGAAATTTCGAGATTTCGATGGAAATTTTTCATTATGTTTCTCTTAGAAATTTTGTATCGATCATAGTTTTCCCAAGGTTGAAATGGGCTTTTAGGCCACATATATTACATTAGACAATGCCCAAGTCCATCTAGAGAACAAGTGATTGCAACATGCAATGGCTAATTTTTGTATCATTGTATAAAGTGGACATCAATATATTTACAAGTGTGATGGAAGGGTAGAAGCACGTGTAATTCAAGCAATAACCACACCGTCATCAAAACAAACACATGCTGACATGCATTACCCTCTCAAACCAAACTCTTCCTTCTTCATTTTCGATTGAAACAGAGTTGACAGAGAATAAGGAAAAGAAGAATGTTAAAAAGCTGGTTCCGCCATGGCTACAACAAGGTGGCTAAGACGAGGTTTGGAGTATTAGAAGCCCATCCTGTGGCTCAGCAACATGCAGAAGAAGCCATGGAAGCTCATGTTGAAACACAGAATAAGCTTAAATCCAATCAAAAGGAGTTCAAAATATATAGGTGGAATCCTCAATATCCCAACCACAAGCCTTTCCTTCACTCTTTCTTTGTTGATCTCTCTAATTGTGGTCCTATGGTACACTCTTCCTCTCTTTCTCTTTCTCTAATGACATTTTAGAACTATGTTTCATAATTTTGGTTTGGTGTCATATTAGTTTTTGGCTTAAATTCGAGAAATTACTCAAGTAGCCTTCGCAGTTGAGAAACTGCAAAAGTATCTCGAATTTGTATTTAGTTATTGATGCCAAAATTTGGATGAGATAAATACAAACTCAATTCTCCTGAGACAACAACCGTGAATTTGTAATATAGTGAAAAATACTACCAGCAAAACGAAAAAGATCTGGACACTTGTGTGGTGCTTGCCACACAAGCTGCGATGTTTAGCAGAGAAAACTATGTAGCATATAGGGAACTTTAGTATGTGAGTGAACTCACTCCTTTGGGAGAGTTTACCATATATTTATAGTTTACATTGACCTAGACCCTCCTTCCTTTAGGGTTTCCAACATGCACTTCTTGGATAAATGTATTTAGAGGAACTGCAAAAATACCTCGAATTGTATCTCGTGATTAGCTTGATGAGTGGTTATCACGACATGCATATTTTTTAATTCAAATCCCTTTCCCTTGTTAAATCGTCGATTGAGGGTCAATTGGCGATTTAAGATGGTATCAAAAGCAGGTAGATTATCTTAAACTCTTGGGTCAATCGACGATTTAATACTTTTCTCAATTAATAAGAAGGATGTTTGTAGATAACTTGTATGTGAGGATGTGATTCACAGTTTTGCATCGATACTCTCTAGATCTTTTGAATGTGAGATGCTCAACCAGATATGTATGAGATAGGAATGAGGAAAGTAGATATATTAAGACTGGTGAGATGGTGATTTTGTAGGTTTTAGATGCATTGCAGAAGATAAAAGCAGAGAAAGACTCAAGTTTGAGTTATAGAAGGTCTTGTAGGGAAGGAATATGTGGATCATGTGCCATGAACATTGATGGAGCTAACACAGTGGCCTGTCTCAAACCTATTGATGCTGACACTTCCAAACCCACCATTATAACTCCTCTTCCCCACATGTTTGTCATCAAAGATCTTGTTGTTGATCTCACCAACTTCTACCAACAATACAAGTAATCTCTCTCATCTCACTTTTCACTTTTTATCTTTAGCTTAAGCTTAACCTTCAATGTTTTTCAATTATCATTCAAATCTTTATAACCTCGTTTCCTTTTATATTAATATGGAAATGTTGAGGATTCCTTGTGATATTATTGTTCTTAATCAAAGTGTGGCATGTTAGAAAAATATTGCATGTTTGTAATATCATTCATTGAATGAGAACATCATTTCTTTTCTCCTTAGCTGACTATAGTTTGATGCATATATAGGTCGATCGAGCCATGGCTGAAGACTAGAAGGTCGACAGAGGATGGGCGAGAGTTCAGGCAATCTCGGGCGGAGAGGAAGAAGCTAGATGGGTTGTATGAGTGTATTCTTTGTGCTTGTTGCAGTGCTTCATGTCCTCCATATTGGTGGAATCCAGAAGAGTTTCTTGGTCCTGCTGCATTGCTCCATGTCTATCGATGGATCTCTGATAGGTAATTCAAGTACTTTCTCCCCCATTTACTTTTTTTTTTCCAATTATATTTGAGACATATTTGCGAGTTATCTGAAATGGTTGAAATCACTGTTTTTAGTTTCATAATCATTGAAAATACTTTTCAATCCTCCAAAATGAGAGTGATTCTGAAATAGTTAAAATCAATTTTGTCATCTTTAAAATCACTCTGAAACACGATTATCTTTTAATCAAATTGTATTTAACAGTGTAAAATTAAAAATTAAATTAATTTTAATTGATTAAAACGTGTGTCAAAGTAAATAGAAGTGATTTTAACCATTTCAAAATAATTAATTATCTTAAACATTGAGATAGATGTGAAGTTGAACTAGGGTATAATTTGACAAGCTTAATCTATGATTAATGATGTGAGGTTTAAAAGTTGTTTAAAATGGTAGTCGAGATGAGTTCGAGAAGGAACGATTGCAAGCAATAGCGGAAGACAAGACGAAGCTTTATAGATGTAGAACTGTAAAGAACTGCACAGCCAACTGCCCCAAAAGCCTCGATCCTTCCTCTGCAATTCACCACATGAAGGCAATGCATTTGATCTCCAAGTCCAACAATTAGCTTTTCTACCTTTTTTTATTCTTCTCTAAAATCCTAAGACTAGGCATAGTTTCGAGATCGAACCAATACATCTTCAGTGTTGTTTCTCGTCTCTGGTTTCTTTTATATCTTCAGTCAAAATTTTGATCATTGCTTCTGCAGTACATTTATCTTTCTTTTTCTTCAATCTTAATAACCTTCTTTGTAGTTAACTTGTATAACAAACAAATAGAAAAGGTTGCCAAATACACTCTTTTATAAGAAAACAGAAACAAGGTTATGCAAAATGGGAAATGCAGAACGGTTTGTAGACCCTAAATAATTATTATAAGTAGTGTTTATTACACAATTGTTATACAAAAGCTCCACAAAAAAGGGGGAAGAAAATTAAAGACACATGAAGAAAAGTAGCTTAATCAAGAGTTGCCATCCCATTTCTGGTATCAAACTTAAAAAGAATAGCCAAAACTACAAGTAGAGTTTCTATACAGAAATAAATTTGGGCAAAGCCAAATCCTAAGGCACCAACTTCTGCTGAGAAATTAC

mRNA sequence

TCGAAATATTCTCAAAATCTCGAAATTTCTCAAAATTGGGGGAAAACAAAATTTTTCTCAATCAATCTTTTAAGACCCTCGAAACCTCGAAATTTCGAGATTTCGATGGAAATTTTTCATTATGTTTCTCTTAGAAATTTTGTATCGATCATAGTTTTCCCAAGGTTGAAATGGGCTTTTAGGCCACATATATTACATTAGACAATGCCCAAGTCCATCTAGAGAACAAGTGATTGCAACATGCAATGGCTAATTTTTGTATCATTGTATAAAGTGGACATCAATATATTTACAAGTGTGATGGAAGGGTAGAAGCACGTGTAATTCAAGCAATAACCACACCGTCATCAAAACAAACACATGCTGACATGCATTACCCTCTCAAACCAAACTCTTCCTTCTTCATTTTCGATTGAAACAGAGTTGACAGAGAATAAGGAAAAGAAGAATGTTAAAAAGCTGGTTCCGCCATGGCTACAACAAGGTGGCTAAGACGAGGTTTGGAGTATTAGAAGCCCATCCTGTGGCTCAGCAACATGCAGAAGAAGCCATGGAAGCTCATGTTGAAACACAGAATAAGCTTAAATCCAATCAAAAGGAGTTCAAAATATATAGGTGGAATCCTCAATATCCCAACCACAAGCCTTTCCTTCACTCTTTCTTTGTTGATCTCTCTAATTGTGGTCCTATGGTTTTAGATGCATTGCAGAAGATAAAAGCAGAGAAAGACTCAAGTTTGAGTTATAGAAGGTCTTGTAGGGAAGGAATATGTGGATCATGTGCCATGAACATTGATGGAGCTAACACAGTGGCCTGTCTCAAACCTATTGATGCTGACACTTCCAAACCCACCATTATAACTCCTCTTCCCCACATGTTTGTCATCAAAGATCTTGTTGTTGATCTCACCAACTTCTACCAACAATACAAGTCGATCGAGCCATGGCTGAAGACTAGAAGGTCGACAGAGGATGGGCGAGAGTTCAGGCAATCTCGGGCGGAGAGGAAGAAGCTAGATGGGTTTCGAGATGAGTTCGAGAAGGAACGATTGCAAGCAATAGCGGAAGACAAGACGAAGCTTTATAGATGTAGAACTGTAAAGAACTGCACAGCCAACTGCCCCAAAAGCCTCGATCCTTCCTCTGCAATTCACCACATGAAGGCAATGCATTTGATCTCCAAGTCCAACAATTAGCTTTTCTACCTTTTTTTATTCTTCTCTAAAATCCTAAGACTAGGCATAGTTTCGAGATCGAACCAATACATCTTCAGTGTTGTTTCTCGTCTCTGGTTTCTTTTATATCTTCAGTCAAAATTTTGATCATTGCTTCTGCAGTACATTTATCTTTCTTTTTCTTCAATCTTAATAACCTTCTTTGTAGTTAACTTGTATAACAAACAAATAGAAAAGGTTGCCAAATACACTCTTTTATAAGAAAACAGAAACAAGGTTATGCAAAATGGGAAATGCAGAACGGTTTGTAGACCCTAAATAATTATTATAAGTAGTGTTTATTACACAATTGTTATACAAAAGCTCCACAAAAAAGGGGGAAGAAAATTAAAGACACATGAAGAAAAGTAGCTTAATCAAGAGTTGCCATCCCATTTCTGGTATCAAACTTAAAAAGAATAGCCAAAACTACAAGTAGAGTTTCTATACAGAAATAAATTTGGGCAAAGCCAAATCCTAAGGCACCAACTTCTGCTGAGAAATTAC

Coding sequence (CDS)

ATGTTAAAAAGCTGGTTCCGCCATGGCTACAACAAGGTGGCTAAGACGAGGTTTGGAGTATTAGAAGCCCATCCTGTGGCTCAGCAACATGCAGAAGAAGCCATGGAAGCTCATGTTGAAACACAGAATAAGCTTAAATCCAATCAAAAGGAGTTCAAAATATATAGGTGGAATCCTCAATATCCCAACCACAAGCCTTTCCTTCACTCTTTCTTTGTTGATCTCTCTAATTGTGGTCCTATGGTTTTAGATGCATTGCAGAAGATAAAAGCAGAGAAAGACTCAAGTTTGAGTTATAGAAGGTCTTGTAGGGAAGGAATATGTGGATCATGTGCCATGAACATTGATGGAGCTAACACAGTGGCCTGTCTCAAACCTATTGATGCTGACACTTCCAAACCCACCATTATAACTCCTCTTCCCCACATGTTTGTCATCAAAGATCTTGTTGTTGATCTCACCAACTTCTACCAACAATACAAGTCGATCGAGCCATGGCTGAAGACTAGAAGGTCGACAGAGGATGGGCGAGAGTTCAGGCAATCTCGGGCGGAGAGGAAGAAGCTAGATGGGTTTCGAGATGAGTTCGAGAAGGAACGATTGCAAGCAATAGCGGAAGACAAGACGAAGCTTTATAGATGTAGAACTGTAAAGAACTGCACAGCCAACTGCCCCAAAAGCCTCGATCCTTCCTCTGCAATTCACCACATGAAGGCAATGCATTTGATCTCCAAGTCCAACAATTAG

Protein sequence

MLKSWFRHGYNKVAKTRFGVLEAHPVAQQHAEEAMEAHVETQNKLKSNQKEFKIYRWNPQYPNHKPFLHSFFVDLSNCGPMVLDALQKIKAEKDSSLSYRRSCREGICGSCAMNIDGANTVACLKPIDADTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTRRSTEDGREFRQSRAERKKLDGFRDEFEKERLQAIAEDKTKLYRCRTVKNCTANCPKSLDPSSAIHHMKAMHLISKSNN

Homology

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BLAST of Lsi07G001740 vs. Swiss-Prot
Match: SDHB3_ARATH (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial OS=Arabidopsis thaliana GN=SDH2-3 PE=1 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 1.8e-77
Identity = 157/270 (58.15%), Postives = 185/270 (68.52%), Query Frame = 1


Query: 18  FGVLEAHPVAQQHAEEAMEAHVETQNKL---KSNQKEFKIYRWNPQYPNHKPFLHSFFVD 77
           F +L  H  AQ  +++ +++   T+ K    K  +KEFKIYRWNP  PN KPFL SFFVD
Sbjct: 32  FPILNGHKAAQDLSKDTLKSQDITKEKEGQHKEVKKEFKIYRWNPDKPNSKPFLQSFFVD 91

Query: 78  LSNCGPMVLDALQKIKAEKDSSLSYRRSCREGICGSCAMNIDGANTVACLKPIDADTSKP 137
           LS+CGPMVLD LQKIKAE D+SLSYRRSCREGICGSC+MNIDG NTVACLKPI+ +TSKP
Sbjct: 92  LSSCGPMVLDVLQKIKAEDDASLSYRRSCREGICGSCSMNIDGTNTVACLKPINPNTSKP 151

Query: 138 TIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTRRSTEDGREFRQ------------- 197
           TIITPLPHM+VIKDLVVDLTNFYQQYKS+EPWLKTR+  +DGRE RQ             
Sbjct: 152 TIITPLPHMYVIKDLVVDLTNFYQQYKSMEPWLKTRKPPKDGREHRQSPKDRKKLDGLYE 211

Query: 198 ---------------------------SRAERKKLDGFRDEFEKERLQAIAEDKTKLYRC 245
                                       +A R   D  RDE+ +ERLQAI E +TK+YRC
Sbjct: 212 CILCACCTTSCPSYWWNPEEFPGPAALLQAYRWISDS-RDEYREERLQAITESETKVYRC 271

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BLAST of Lsi07G001740 vs. Swiss-Prot
Match: SDHB2_ORYSJ (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial OS=Oryza sativa subsp. japonica GN=SDH2-2 PE=1 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 4.1e-53
Identity = 115/247 (46.56%), Postives = 147/247 (59.51%), Query Frame = 1


Query: 14  AKTRFGVLEAHPVAQQHAEEAMEAHVETQNKLK-----------------SNQKEFKIYR 73
           A   F  L  HP A+ +A +A E       K +                 S  KEF++YR
Sbjct: 22  ADGHFPSLRGHPAARANARDAAEKQAALAAKEEEIRDHRRGDAAAASPAPSTVKEFRVYR 81

Query: 74  WNPQYPNHKPFLHSFFVDLSNCGPMVLDALQKIKAEKDSSLSYRRSCREGICGSCAMNID 133
           W+P  P+ +P L S+ VDL+ CGPMVLD LQKIKAE D++L++RRSCREGICGSC+M ID
Sbjct: 82  WSPDAPSRRPHLQSYHVDLATCGPMVLDVLQKIKAEHDATLAFRRSCREGICGSCSMCID 141

Query: 134 GANTVACLKPIDADTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTRRSTE-D 193
           G NTVACL+P+D DTS  T +TPLPHM+V++DLVVDLT+FYQQYKS+EPWLK +  T+ +
Sbjct: 142 GVNTVACLRPVDTDTSSATTVTPLPHMYVVRDLVVDLTSFYQQYKSVEPWLKRKTKTKTE 201

Query: 194 GREFRQSRAERKKLDGFRDEFEKERLQAIAEDKTKLYRCRTVKNCTANCPK-------SL 236
             E  QS  ERK+LDG                   LY C     C+A CP         L
Sbjct: 202 TTEHAQSPEERKRLDG-------------------LYECILCACCSAACPSYWWNAEAFL 249

[Close]

BLAST of Lsi07G001740 vs. Swiss-Prot
Match: SDHB_CANGA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=SDH2 PE=3 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 8.0e-49
Identity = 101/176 (57.39%), Postives = 118/176 (67.05%), Query Frame = 1


Query: 50  KEFKIYRWNPQYPNHKPFLHSFFVDLSNCGPMVLDALQKIKAEKDSSLSYRRSCREGICG 109
           K FKIYRWNP  P  KP L  + VDL +CGPMVLDAL KIK E+D++L++RRSCREGICG
Sbjct: 21  KTFKIYRWNPDKPTEKPHLQEYKVDLEDCGPMVLDALLKIKNEQDATLTFRRSCREGICG 80

Query: 110 SCAMNIDGANTVACLKPIDADTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKT 169
           SCAMNI GANT+ACL  ID D SK T I PLPHMF++KDLV DLT FYQQYKSI+P+L+ 
Sbjct: 81  SCAMNIGGANTLACLCKIDQDESKTTKIYPLPHMFIVKDLVPDLTGFYQQYKSIQPYLQR 140

Query: 170 RRSTEDGREFRQSRAERKKLDGFRDEFEKERLQAIAEDKTKLYRCRTVKNCTANCP 226
                DG+E  QS  +RKKLDG                   LY C     C+ +CP
Sbjct: 141 TDYPADGKEVLQSIDDRKKLDG-------------------LYECILCACCSTSCP 177

[Close]

BLAST of Lsi07G001740 vs. Swiss-Prot
Match: SDHB_YEAST (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SDH2 PE=1 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 3.0e-48
Identity = 99/176 (56.25%), Postives = 120/176 (68.18%), Query Frame = 1


Query: 50  KEFKIYRWNPQYPNHKPFLHSFFVDLSNCGPMVLDALQKIKAEKDSSLSYRRSCREGICG 109
           K FK+YRWNP  P+ KP L S+ VDL++CGPMVLDAL KIK E+DS+L++RRSCREGICG
Sbjct: 34  KTFKVYRWNPDEPSAKPHLQSYQVDLNDCGPMVLDALLKIKDEQDSTLTFRRSCREGICG 93

Query: 110 SCAMNIDGANTVACLKPIDADTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKT 169
           SCAMNI G NT+AC+  ID + SK   I PLPHMF++KDLV DLTNFYQQYKSI+P+L+ 
Sbjct: 94  SCAMNIGGRNTLACICKIDQNESKQLKIYPLPHMFIVKDLVPDLTNFYQQYKSIQPYLQR 153

Query: 170 RRSTEDGREFRQSRAERKKLDGFRDEFEKERLQAIAEDKTKLYRCRTVKNCTANCP 226
               +DG E  QS  +RKKLDG                   LY C     C+ +CP
Sbjct: 154 SSFPKDGTEVLQSIEDRKKLDG-------------------LYECILCACCSTSCP 190

[Close]

BLAST of Lsi07G001740 vs. Swiss-Prot
Match: SDHB_RECAM (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit OS=Reclinomonas americana GN=SDH2 PE=3 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.2e-47
Identity = 114/236 (48.31%), Postives = 141/236 (59.75%), Query Frame = 1


Query: 43  NKLKSNQKEFKIYRWNPQYPNHKPFLHSFFVDLSNCGPMVLDALQKIKAEKDSSLSYRRS 102
           N  K     FK+YRWNP     KP + ++ VDL++CGPMVLDAL KIK E+DS+L++RRS
Sbjct: 2   NTKKEKIMLFKVYRWNPD-KKEKPHISTYSVDLNSCGPMVLDALIKIKNEQDSTLTFRRS 61

Query: 103 CREGICGSCAMNIDGANTVACLKPIDADTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKS 162
           CREG+CGSCAMNIDG NT+AC+K ID +  K   I PLPHM +IKDLV DL+NFY QYKS
Sbjct: 62  CREGVCGSCAMNIDGTNTLACIKSIDTN-KKEMKIYPLPHMHIIKDLVPDLSNFYAQYKS 121

Query: 163 IEPWLKTRRSTEDGREFRQS---------------------------------------- 222
           IEPW+KT     D +EF QS                                        
Sbjct: 122 IEPWMKTTEKKLD-KEFYQSRNDREKLDGLYECVLCACCSTSCPSYWWNSDKYLGPAVLL 181

Query: 223 RAERKKLDGFRDEFEKERLQAIAEDKTKLYRCRTVKNCTANCPKSLDPSSAIHHMK 239
           +A R  +D  RD+  +ERLQ + ED  KLYRC T+ NCT  CPK L+P+ AI  +K
Sbjct: 182 QAYRWIVDS-RDQGTRERLQYL-EDPFKLYRCHTILNCTKTCPKHLNPAQAIAKIK 232

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BLAST of Lsi07G001740 vs. TrEMBL
Match: A0A0A0KUA7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G028980 PE=4 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 1.8e-92
Identity = 179/244 (73.36%), Postives = 192/244 (78.69%), Query Frame = 1


Query: 1   MLKSWFRHGYNKVAKTRFGVLEAHPVAQQHAEEAMEAHVETQNKLK--SNQKEFKIYRWN 60
           MLK WFRHGYNK  K RFGVLEA P+A+QHAEEAMEAH E ++ L   +N+KEFKIYRWN
Sbjct: 1   MLKRWFRHGYNKEWKQRFGVLEARPMAKQHAEEAMEAHGEIKSNLDEFNNRKEFKIYRWN 60

Query: 61  PQYPNHKPFLHSFFVDLSNCGPMVLDALQKIKAEKDSSLSYRRSCREGICGSCAMNIDGA 120
           PQYPNHKPFLHSFF+DLS CGPMVLDALQKIKAEKDSSLSYRRSCREGICGSC MNIDGA
Sbjct: 61  PQYPNHKPFLHSFFLDLSKCGPMVLDALQKIKAEKDSSLSYRRSCREGICGSCGMNIDGA 120

Query: 121 NTVACLKPIDADTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTRRSTEDGRE 180
           NTVACLKPIDADTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTRRS E GRE
Sbjct: 121 NTVACLKPIDADTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTRRSAEGGRE 180

Query: 181 FRQSRAERKKLDGFRDEFEKERLQAIAEDKTKLYRCRTVKNCTANCP-------KSLDPS 236
           FRQS AERKKLDG                   LY C     C+ +CP       + L P+
Sbjct: 181 FRQSPAERKKLDG-------------------LYECILCACCSTSCPPYWWNPEEFLGPA 225

[Close]

BLAST of Lsi07G001740 vs. TrEMBL
Match: A0A059B905_EUCGR (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Eucalyptus grandis GN=EUGRSUZ_H04808 PE=3 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 1.3e-82
Identity = 166/296 (56.08%), Postives = 195/296 (65.88%), Query Frame = 1


Query: 1   MLKSWFRHGYNKVA-------------KTRFGVLEAHPVAQQHAEEAMEAHVETQNKLKS 60
           M KS FRH Y + A                F VLE HP  ++HAE+AME     + K ++
Sbjct: 1   MSKSLFRHAYERAAGLLELGKKGAKPTSREFPVLEGHPAGRRHAEQAMETFKTIEEKREA 60

Query: 61  NQKEFKIYRWNPQYPNHKPFLHSFFVDLSNCGPMVLDALQKIKAEKDSSLSYRRSCREGI 120
             KEF+IYRW+P  P+ +P+L S+F+DL+ CGPMVLDALQKIKAE DS+LSYRRSCREGI
Sbjct: 61  MVKEFRIYRWSPGRPHRRPYLQSYFLDLTTCGPMVLDALQKIKAEDDSTLSYRRSCREGI 120

Query: 121 CGSCAMNIDGANTVACLKPIDADTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWL 180
           CGSCAMNIDG NTVACLKPIDADTS+PT ITPLPHMFVI+DLVVDLTNFYQQY+SIEPWL
Sbjct: 121 CGSCAMNIDGTNTVACLKPIDADTSEPTTITPLPHMFVIRDLVVDLTNFYQQYRSIEPWL 180

Query: 181 KTRRSTEDGREFRQ-----SRAER----------------------------------KK 240
           KTR   EDGRE+RQ      R +                                   + 
Sbjct: 181 KTRHPPEDGREYRQSPAERKRLDGLYECILCACCSSSCPSYWWNPEEFLGPAALLHSYRW 240

Query: 241 LDGFRDEFEKERLQAIAEDKTKLYRCRTVKNCTANCPKSLDPSSAIHHMKAMHLIS 245
           +   RDEF  ERLQA+ ED+ +LYRCRT+KNCT  CPKSLDP+ AIH MK  HL+S
Sbjct: 241 ISDSRDEFADERLQALTEDQKRLYRCRTIKNCTKTCPKSLDPADAIHKMKTRHLLS 296

[Close]

BLAST of Lsi07G001740 vs. TrEMBL
Match: M5W2C3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016428mg PE=4 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 4.0e-79
Identity = 159/252 (63.10%), Postives = 181/252 (71.83%), Query Frame = 1


Query: 1   MLKSWFRHGYNKVA----------KTRFGVLEAHPVAQQHAEEAMEAHVETQNKLKSNQK 60
           M KSW RHG+N+VA          K  F VLE HPVAQQHAE A+E H +T  K +   K
Sbjct: 1   MSKSWIRHGFNRVARIVGRAADPKKENFPVLEGHPVAQQHAEVALETH-DTVKKKEQLLK 60

Query: 61  EFKIYRWNPQYPNHKPFLHSFFVDLSNCGPMVLDALQKIKAEKDSSLSYRRSCREGICGS 120
           EFKIYRW+P +PN+KP+LHS+FVDLSNCGPMVLDALQKIKAE DSSLSY RSCREGICGS
Sbjct: 61  EFKIYRWSPDHPNNKPYLHSYFVDLSNCGPMVLDALQKIKAEDDSSLSYWRSCREGICGS 120

Query: 121 CAMNIDGANTVACLKPIDADTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTR 180
           C+MNIDG NTVACL+PIDADTSKPT ITPLPHMFVIKDLVVDLTNFYQQYK IEPWLKT 
Sbjct: 121 CSMNIDGTNTVACLRPIDADTSKPTTITPLPHMFVIKDLVVDLTNFYQQYKLIEPWLKTT 180

Query: 181 RSTEDGREFRQSRAERKKLDGFRDEFEKERLQAIAEDKTKLYRCRTVKNCTANCP----- 236
           +  +DGRE+RQS ++RKKLDG                   LY C     CT +CP     
Sbjct: 181 KPPKDGREYRQSPSDRKKLDG-------------------LYECILCACCTTSCPSYWWN 232

[Close]

BLAST of Lsi07G001740 vs. TrEMBL
Match: B9T7U2_RICCO (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Ricinus communis GN=RCOM_0325190 PE=3 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 8.8e-79
Identity = 152/249 (61.04%), Postives = 181/249 (72.69%), Query Frame = 1


Query: 3   KSWFRHGYNKVAKT---------RFGVLEAHPVAQQHAEEAMEAHVETQNKLKSNQKEFK 62
           +SW RHGYNK+A+           F +L+ HPV QQHA+E++E +   Q+ +K   KEF+
Sbjct: 9   RSWLRHGYNKIARMLGKQDPKDQNFPILKGHPVGQQHAQESVETYGTVQDNIKKLIKEFR 68

Query: 63  IYRWNPQYPNHKPFLHSFFVDLSNCGPMVLDALQKIKAEKDSSLSYRRSCREGICGSCAM 122
           +YRW+P  PN+KPFL S+F+DLS+CGPMVLDALQKIKAE DSSLSYRRSCREGICGSC+M
Sbjct: 69  VYRWSPDNPNNKPFLQSYFIDLSSCGPMVLDALQKIKAEDDSSLSYRRSCREGICGSCSM 128

Query: 123 NIDGANTVACLKPIDADTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTRRST 182
           NIDG NTVACLKPIDADTS+PTIITPLPHM+VIKDLVVDLTNFY QY+SIEPWLKTR+  
Sbjct: 129 NIDGTNTVACLKPIDADTSRPTIITPLPHMYVIKDLVVDLTNFYNQYRSIEPWLKTRKKP 188

Query: 183 EDGREFRQSRAERKKLDGFRDEFEKERLQAIAEDKTKLYRCRTVKNCTANCP-------K 236
           EDGRE+RQS A+RKKLDG                   LY C     C+A+CP       +
Sbjct: 189 EDGREYRQSPADRKKLDG-------------------LYECILCACCSASCPSYWWNPEE 238

[Close]

BLAST of Lsi07G001740 vs. TrEMBL
Match: M5WPQ4_PRUPE (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Prunus persica GN=PRUPE_ppa018743mg PE=3 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 8.8e-79
Identity = 155/235 (65.96%), Postives = 174/235 (74.04%), Query Frame = 1


Query: 1   MLKSWFRHGYNKVA----------KTRFGVLEAHPVAQQHAEEAMEAHVETQNKLKSNQK 60
           M KSW RHG+N+VA          K  F VLE HPVAQQHAE A+E H +T  K     K
Sbjct: 1   MSKSWIRHGFNRVARIVGRAADPKKENFPVLEGHPVAQQHAEVALETH-DTVRKKDRVLK 60

Query: 61  EFKIYRWNPQYPNHKPFLHSFFVDLSNCGPMVLDALQKIKAEKDSSLSYRRSCREGICGS 120
           EFKIYRW+P + N+KP+LHS+F+DLSNCGPMVLDALQKIKAE DSSLSYRRSCREGICGS
Sbjct: 61  EFKIYRWSPDHSNNKPYLHSYFLDLSNCGPMVLDALQKIKAEDDSSLSYRRSCREGICGS 120

Query: 121 CAMNIDGANTVACLKPIDADTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTR 180
           C+MNIDG NTVACL+PIDADTSKPT ITPLPHMFVIKDLVVDLTNFYQQYK IEPWLKT+
Sbjct: 121 CSMNIDGTNTVACLRPIDADTSKPTTITPLPHMFVIKDLVVDLTNFYQQYKLIEPWLKTK 180

Query: 181 RSTEDGREFRQSRAERKKLDGFRDEFEKERLQAIAEDKTKLYRCRTVKNCTANCP 226
           +  +DGRE+RQS ++RKKLDG                   LY C     CT +CP
Sbjct: 181 KPPKDGREYRQSPSDRKKLDG-------------------LYECIVCACCTTSCP 215

[Close]

BLAST of Lsi07G001740 vs. TAIR10
Match: AT5G65165.1 (AT5G65165.1 succinate dehydrogenase 2-3)

HSP 1 Score: 290.4 bits (742), Expect = 1.0e-78
Identity = 157/270 (58.15%), Postives = 185/270 (68.52%), Query Frame = 1


Query: 18  FGVLEAHPVAQQHAEEAMEAHVETQNKL---KSNQKEFKIYRWNPQYPNHKPFLHSFFVD 77
           F +L  H  AQ  +++ +++   T+ K    K  +KEFKIYRWNP  PN KPFL SFFVD
Sbjct: 32  FPILNGHKAAQDLSKDTLKSQDITKEKEGQHKEVKKEFKIYRWNPDKPNSKPFLQSFFVD 91

Query: 78  LSNCGPMVLDALQKIKAEKDSSLSYRRSCREGICGSCAMNIDGANTVACLKPIDADTSKP 137
           LS+CGPMVLD LQKIKAE D+SLSYRRSCREGICGSC+MNIDG NTVACLKPI+ +TSKP
Sbjct: 92  LSSCGPMVLDVLQKIKAEDDASLSYRRSCREGICGSCSMNIDGTNTVACLKPINPNTSKP 151

Query: 138 TIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTRRSTEDGREFRQ------------- 197
           TIITPLPHM+VIKDLVVDLTNFYQQYKS+EPWLKTR+  +DGRE RQ             
Sbjct: 152 TIITPLPHMYVIKDLVVDLTNFYQQYKSMEPWLKTRKPPKDGREHRQSPKDRKKLDGLYE 211

Query: 198 ---------------------------SRAERKKLDGFRDEFEKERLQAIAEDKTKLYRC 245
                                       +A R   D  RDE+ +ERLQAI E +TK+YRC
Sbjct: 212 CILCACCTTSCPSYWWNPEEFPGPAALLQAYRWISDS-RDEYREERLQAITESETKVYRC 271

[Close]

BLAST of Lsi07G001740 vs. TAIR10
Match: AT5G40650.1 (AT5G40650.1 succinate dehydrogenase 2-2)

HSP 1 Score: 187.2 bits (474), Expect = 1.2e-47
Identity = 103/194 (53.09%), Postives = 125/194 (64.43%), Query Frame = 1


Query: 50  KEFKIYRWNPQYPNHKPFLHSFFVDLSNCGPMVLDALQKIKAEKDSSLSYRRSCREGICG 109
           K F+IYRWNP  P  KP L  + +DL +CGPMVLDAL KIK E D SL++RRSCREGICG
Sbjct: 49  KTFQIYRWNPDNPG-KPELQDYKIDLKDCGPMVLDALIKIKNEMDPSLTFRRSCREGICG 108

Query: 110 SCAMNIDGANTVACLKPIDADTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKT 169
           SCAMNIDG N +ACL  I++  SK T ITPLPHMFVIKDLVVD+TNFY QYKSIEPWLK 
Sbjct: 109 SCAMNIDGCNGLACLTKIESG-SKETTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKR 168

Query: 170 RR-STEDGREFRQSRAERKKLDGFRDEFEKERLQAIAEDKTKLYRCRTVKNCTANCP--- 229
           +  ++  G+E  QS+ +R KLDG                   +Y C     C+ +CP   
Sbjct: 169 KNPASVPGKEILQSKKDRAKLDG-------------------MYECILCACCSTSCPSYW 221

Query: 230 ----KSLDPSSAIH 236
                 L P++ +H
Sbjct: 229 WNPESYLGPAALLH 221

[Close]

BLAST of Lsi07G001740 vs. TAIR10
Match: AT3G27380.1 (AT3G27380.1 succinate dehydrogenase 2-1)

HSP 1 Score: 185.7 bits (470), Expect = 3.6e-47
Identity = 103/197 (52.28%), Postives = 125/197 (63.45%), Query Frame = 1


Query: 47  SNQKEFKIYRWNPQYPNHKPFLHSFFVDLSNCGPMVLDALQKIKAEKDSSLSYRRSCREG 106
           SN K F+IYRWNP  P  KP L ++ +DL +CGPMVLDAL KIK E D SL++RRSCREG
Sbjct: 47  SNLKTFQIYRWNPDNPG-KPELQNYQIDLKDCGPMVLDALIKIKNEMDPSLTFRRSCREG 106

Query: 107 ICGSCAMNIDGANTVACLKPIDADTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPW 166
           ICGSCAMNIDG N +ACL  I  D +  T ITPLPHMFVIKDLVVD+TNFY QYKSIEPW
Sbjct: 107 ICGSCAMNIDGCNGLACLTKIQ-DEASETTITPLPHMFVIKDLVVDMTNFYNQYKSIEPW 166

Query: 167 LKTRR-STEDGREFRQSRAERKKLDGFRDEFEKERLQAIAEDKTKLYRCRTVKNCTANCP 226
           LK +  ++   +E  QS+ +R KLDG                   +Y C     C+ +CP
Sbjct: 167 LKRKTPASVPAKEILQSKKDRAKLDG-------------------MYECILCACCSTSCP 222

Query: 227 -------KSLDPSSAIH 236
                    L P++ +H
Sbjct: 227 SYWWNPESYLGPAALLH 222

[Close]

BLAST of Lsi07G001740 vs. NCBI nr
Match: gi|659108955|ref|XP_008454472.1| (PREDICTED: succinate dehydrogenase [ubiquinone])

HSP 1 Score: 409.5 bits (1051), Expect = 4.3e-111
Identity = 215/288 (74.65%), Postives = 228/288 (79.17%), Query Frame = 1


Query: 1   MLKSWFRHGYNKVAKTRFGVLEAHPVAQQHAEEAMEAHVETQNKLK-SNQKEFKIYRWNP 60
           MLKSWFRH YNKV+K RFGVLE HP+A+QHAEEAMEAH E ++ L+ +NQKEFKIYRWNP
Sbjct: 1   MLKSWFRHAYNKVSKQRFGVLEEHPMAKQHAEEAMEAHGEIKSNLRFNNQKEFKIYRWNP 60

Query: 61  QYPNHKPFLHSFFVDLSNCGPMVLDALQKIKAEKDSSLSYRRSCREGICGSCAMNIDGAN 120
           QYPNHKPFLHSFF+DLS CGPMVLDALQ IKAEKDSSLSYRRSCREGICGSCAMNIDGAN
Sbjct: 61  QYPNHKPFLHSFFLDLSKCGPMVLDALQMIKAEKDSSLSYRRSCREGICGSCAMNIDGAN 120

Query: 121 TVACLKPIDADTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTRRSTEDGREF 180
           TVACLKPIDADTSKPTIITPLPHM+VIKDLVVDLTNFYQQYKSIEPWLKTRRS E GREF
Sbjct: 121 TVACLKPIDADTSKPTIITPLPHMYVIKDLVVDLTNFYQQYKSIEPWLKTRRSAEGGREF 180

Query: 181 RQ----------------------------------------SRAERKKLDGFRDEFEKE 240
           RQ                                          A R   D  RDEF+KE
Sbjct: 181 RQTPAERKKLDGLYECILCACCSASCPPYWWNPEEFIGPAALLHAYRWISDS-RDEFKKE 240

Query: 241 RLQAIAEDKTKLYRCRTVKNCTANCPKSLDPSSAIHHMKAMHLISKSN 248
           RLQAIAEDKTKLYRCRTV+NCTANCPKSLDPSSAIH+MKAMHLI +SN
Sbjct: 241 RLQAIAEDKTKLYRCRTVQNCTANCPKSLDPSSAIHNMKAMHLIFRSN 287

[Close]

BLAST of Lsi07G001740 vs. NCBI nr
Match: gi|659108953|ref|XP_008454471.1| (PREDICTED: succinate dehydrogenase [ubiquinone])

HSP 1 Score: 350.9 bits (899), Expect = 1.8e-93
Identity = 178/243 (73.25%), Postives = 194/243 (79.84%), Query Frame = 1


Query: 1   MLKSWFRHGYNKVAKTRFGVLEAHPVAQQHAEEAMEAHVETQNKLK-SNQKEFKIYRWNP 60
           MLK WFRH YNKV+K RFGVLE HP+A+QHAEEAMEAH E ++ L+ +NQKEFKIYRWNP
Sbjct: 1   MLKGWFRHAYNKVSKKRFGVLEEHPIAKQHAEEAMEAHGEIKSNLRFNNQKEFKIYRWNP 60

Query: 61  QYPNHKPFLHSFFVDLSNCGPMVLDALQKIKAEKDSSLSYRRSCREGICGSCAMNIDGAN 120
           QYPNHKPFLHSFF+DLS CGPMVLDALQ IKAEKDSSLSYRRSCREGICGSCAMNIDGAN
Sbjct: 61  QYPNHKPFLHSFFLDLSKCGPMVLDALQMIKAEKDSSLSYRRSCREGICGSCAMNIDGAN 120

Query: 121 TVACLKPIDADTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTRRSTEDGREF 180
           TVACLKPIDADTSKPTIITPLPHM+VIKDLVVDLTNFYQQYKSIEPWLKTRRS E GREF
Sbjct: 121 TVACLKPIDADTSKPTIITPLPHMYVIKDLVVDLTNFYQQYKSIEPWLKTRRSAEGGREF 180

Query: 181 RQSRAERKKLDGFRDEFEKERLQAIAEDKTKLYRCRTVKNCTANCP-------KSLDPSS 236
           RQ+ AERKKLDG                   LY C     C+ +CP       + L P++
Sbjct: 181 RQTPAERKKLDG-------------------LYECILCACCSTSCPPYWWNPEEFLGPAA 224

[Close]

BLAST of Lsi07G001740 vs. NCBI nr
Match: gi|449458373|ref|XP_004146922.1| (PREDICTED: succinate dehydrogenase [ubiquinone])

HSP 1 Score: 347.1 bits (889), Expect = 2.6e-92
Identity = 179/244 (73.36%), Postives = 192/244 (78.69%), Query Frame = 1


Query: 1   MLKSWFRHGYNKVAKTRFGVLEAHPVAQQHAEEAMEAHVETQNKLK--SNQKEFKIYRWN 60
           MLK WFRHGYNK  K RFGVLEA P+A+QHAEEAMEAH E ++ L   +N+KEFKIYRWN
Sbjct: 1   MLKRWFRHGYNKEWKQRFGVLEARPMAKQHAEEAMEAHGEIKSNLDEFNNRKEFKIYRWN 60

Query: 61  PQYPNHKPFLHSFFVDLSNCGPMVLDALQKIKAEKDSSLSYRRSCREGICGSCAMNIDGA 120
           PQYPNHKPFLHSFF+DLS CGPMVLDALQKIKAEKDSSLSYRRSCREGICGSC MNIDGA
Sbjct: 61  PQYPNHKPFLHSFFLDLSKCGPMVLDALQKIKAEKDSSLSYRRSCREGICGSCGMNIDGA 120

Query: 121 NTVACLKPIDADTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTRRSTEDGRE 180
           NTVACLKPIDADTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTRRS E GRE
Sbjct: 121 NTVACLKPIDADTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTRRSAEGGRE 180

Query: 181 FRQSRAERKKLDGFRDEFEKERLQAIAEDKTKLYRCRTVKNCTANCP-------KSLDPS 236
           FRQS AERKKLDG                   LY C     C+ +CP       + L P+
Sbjct: 181 FRQSPAERKKLDG-------------------LYECILCACCSTSCPPYWWNPEEFLGPA 225

[Close]

BLAST of Lsi07G001740 vs. NCBI nr
Match: gi|1009160795|ref|XP_015898543.1| (PREDICTED: succinate dehydrogenase [ubiquinone])

HSP 1 Score: 335.9 bits (860), Expect = 6.1e-89
Identity = 177/294 (60.20%), Postives = 205/294 (69.73%), Query Frame = 1


Query: 1   MLKSWFRHGYNKVAKT---------RFGVLEAHPVAQQHAEEAMEAHVETQNKLKSNQKE 60
           M KSW RHGY KVA+           F +L+ HP AQ+HAEEA+E H   +NK K   KE
Sbjct: 1   MSKSWVRHGYEKVARILKKGDPKRHNFPILKGHPAAQEHAEEAVETHDTIRNKSKV-LKE 60

Query: 61  FKIYRWNPQYPNHKPFLHSFFVDLSNCGPMVLDALQKIKAEKDSSLSYRRSCREGICGSC 120
           FKIYRWNP +PN+KP+L S+F+DLSNCGPMVLDALQKIKAE+DSSLSYRRSCREGICGSC
Sbjct: 61  FKIYRWNPNHPNNKPYLQSYFLDLSNCGPMVLDALQKIKAEEDSSLSYRRSCREGICGSC 120

Query: 121 AMNIDGANTVACLKPIDADTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTRR 180
           +MNIDG NTVACL+PI  DTSKPT+ITPLPHMFVIKDLVVDLTNFYQQYK I+PWLKT++
Sbjct: 121 SMNIDGTNTVACLRPIGKDTSKPTVITPLPHMFVIKDLVVDLTNFYQQYKYIKPWLKTKK 180

Query: 181 STEDGREFRQ----------------------------------------SRAERKKLDG 240
             EDGRE+RQ                                          A R   D 
Sbjct: 181 HPEDGREYRQSPEDRKKLDGLYECILCACCSTSCPSYWWNPEEFPGPAALLHAYRWISDS 240

Query: 241 FRDEFEKERLQAIAEDKTKLYRCRTVKNCTANCPKSLDPSSAIHHMKAMHLISK 246
            RDEF +ERLQA+ ED+ +LYRCRT++NCTA CPKSLDP+ AIH MK  HL+S+
Sbjct: 241 -RDEFTEERLQAVTEDQRRLYRCRTIQNCTAACPKSLDPAGAIHKMKTKHLLSQ 292

[Close]

BLAST of Lsi07G001740 vs. NCBI nr
Match: gi|702457658|ref|XP_010027314.1| (PREDICTED: succinate dehydrogenase [ubiquinone])

HSP 1 Score: 314.3 bits (804), Expect = 1.9e-82
Identity = 166/296 (56.08%), Postives = 195/296 (65.88%), Query Frame = 1


Query: 1   MLKSWFRHGYNKVA-------------KTRFGVLEAHPVAQQHAEEAMEAHVETQNKLKS 60
           M KS FRH Y + A                F VLE HP  ++HAE+AME     + K ++
Sbjct: 1   MSKSLFRHAYERAAGLLELGKKGAKPTSREFPVLEGHPAGRRHAEQAMETFKTIEEKREA 60

Query: 61  NQKEFKIYRWNPQYPNHKPFLHSFFVDLSNCGPMVLDALQKIKAEKDSSLSYRRSCREGI 120
             KEF+IYRW+P  P+ +P+L S+F+DL+ CGPMVLDALQKIKAE DS+LSYRRSCREGI
Sbjct: 61  MVKEFRIYRWSPGRPHRRPYLQSYFLDLTTCGPMVLDALQKIKAEDDSTLSYRRSCREGI 120

Query: 121 CGSCAMNIDGANTVACLKPIDADTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWL 180
           CGSCAMNIDG NTVACLKPIDADTS+PT ITPLPHMFVI+DLVVDLTNFYQQY+SIEPWL
Sbjct: 121 CGSCAMNIDGTNTVACLKPIDADTSEPTTITPLPHMFVIRDLVVDLTNFYQQYRSIEPWL 180

Query: 181 KTRRSTEDGREFRQ-----SRAER----------------------------------KK 240
           KTR   EDGRE+RQ      R +                                   + 
Sbjct: 181 KTRHPPEDGREYRQSPAERKRLDGLYECILCACCSSSCPSYWWNPEEFLGPAALLHSYRW 240

Query: 241 LDGFRDEFEKERLQAIAEDKTKLYRCRTVKNCTANCPKSLDPSSAIHHMKAMHLIS 245
           +   RDEF  ERLQA+ ED+ +LYRCRT+KNCT  CPKSLDP+ AIH MK  HL+S
Sbjct: 241 ISDSRDEFADERLQALTEDQKRLYRCRTIKNCTKTCPKSLDPADAIHKMKTRHLLS 296

The following BLAST results are available for this feature:

BLAST of Lsi07G001740 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SDHB3_ARATH	1.8e-77	58.15	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial OS=Ara...	[more]
SDHB2_ORYSJ	4.1e-53	46.56	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial OS=Ory...	[more]
SDHB_CANGA	8.0e-49	57.39	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Candi...	[more]
SDHB_YEAST	3.0e-48	56.25	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Sacch...	[more]
SDHB_RECAM	1.2e-47	48.31	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit OS=Reclinomonas america...	[more]

BLAST of Lsi07G001740 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUA7_CUCSA	1.8e-92	73.36	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G028980 PE=4 SV=1	[more]
A0A059B905_EUCGR	1.3e-82	56.08	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Eucal...	[more]
M5W2C3_PRUPE	4.0e-79	63.10	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016428mg PE=4 SV=1	[more]
B9T7U2_RICCO	8.8e-79	61.04	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Ricin...	[more]
M5WPQ4_PRUPE	8.8e-79	65.96	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Prunu...	[more]

BLAST of Lsi07G001740 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G65165.1	1.0e-78	58.15	succinate dehydrogenase 2-3	[more]
AT5G40650.1	1.2e-47	53.09	succinate dehydrogenase 2-2	[more]
AT3G27380.1	3.6e-47	52.28	succinate dehydrogenase 2-1	[more]

BLAST of Lsi07G001740 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659108955\|ref\|XP_008454472.1\|	4.3e-111	74.65	PREDICTED: succinate dehydrogenase [ubiquinone]	[more]
gi\|659108953\|ref\|XP_008454471.1\|	1.8e-93	73.25	PREDICTED: succinate dehydrogenase [ubiquinone]	[more]
gi\|449458373\|ref\|XP_004146922.1\|	2.6e-92	73.36	PREDICTED: succinate dehydrogenase [ubiquinone]	[more]
gi\|1009160795\|ref\|XP_015898543.1\|	6.1e-89	60.20	PREDICTED: succinate dehydrogenase [ubiquinone]	[more]
gi\|702457658\|ref\|XP_010027314.1\|	1.9e-82	56.08	PREDICTED: succinate dehydrogenase [ubiquinone]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0051537	2 iron, 2 sulfur cluster binding
GO:0016491	oxidoreductase activity
GO:0051536	iron-sulfur cluster binding
GO:0009055	electron carrier activity

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process
GO:0006099	tricarboxylic acid cycle

Vocabulary: **INTERPRO**
Term	Definition
IPR025192	Succ_DH/fum_Rdtase_N
IPR012675	Beta-grasp_dom_sf
IPR009051	Helical_ferredxn
IPR006058	2Fe2S_fd_BS
IPR004489	Succ_DH/fum_Rdtase_Fe-S
IPR001041	2Fe-2S_ferredoxin-type

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006099	tricarboxylic acid cycle
biological_process	GO:0006119	oxidative phosphorylation
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0045281	succinate dehydrogenase complex
cellular_component	GO:0045273	respiratory chain complex II
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0009055	electron carrier activity
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0051538	3 iron, 4 sulfur cluster binding
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0008177	succinate dehydrogenase (ubiquinone) activity
molecular_function	GO:0051536	iron-sulfur cluster binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G001740.1	Lsi07G001740.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PROFILE	PS51085	2FE2S_FER_2	coord: 50..143 score:
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	unknown	SSF54292	2Fe-2S ferredoxin-like	coord: 48..152 score: 1.89
IPR004489	Succinate dehydrogenase/fumarate reductase iron-sulphur protein	TIGRFAMs	TIGR00384	TIGR00384	coord: 54..193 score: 4.0
IPR006058	2Fe-2S ferredoxin, iron-sulphur binding site	PROSITE	PS00197	2FE2S_FER_1	coord: 103..111 scor
IPR009051	Alpha-helical ferredoxin	unknown	SSF46548	alpha-helical ferredoxin	coord: 154..241 score: 1.1
IPR012675	Beta-grasp domain	GENE3D	G3DSA:3.10.20.30		coord: 44..152 score: 6.3
IPR025192	Succinate dehydogenase/fumarate reductase N-terminal	PFAM	PF13085	Fer2_3	coord: 52..157 score: 1.1
None	No IPR available	unknown	Coil	Coil	coord: 31..51 scor
None	No IPR available	GENE3D	G3DSA:1.10.1060.10		coord: 154..192 score: 2.3E-4coord: 193..242 score: 1.2
None	No IPR available	PANTHER	PTHR11921	SUCCINATE DEHYDROGENASE IRON-SULFUR PROTEIN	coord: 8..245 score: 2.2E
None	No IPR available	PANTHER	PTHR11921:SF23	SUCCINATE DEHYDROGENASE [UBIQUINONE] IRON-SULFUR SUBUNIT 3, MITOCHONDRIAL	coord: 8..245 score: 2.2E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi07G001740	Csa4G028980	Cucumber (Chinese Long) v2	culsiB303
Lsi07G001740	CSPI04G04680	Wild cucumber (PI 183967)	cpilsiB303
Lsi07G001740	Cucsa.029520	Cucumber (Gy14) v1	cgylsiB000
Lsi07G001740	CmaCh04G008020	Cucurbita maxima (Rimu)	cmalsiB698
Lsi07G001740	CmoCh04G008620	Cucurbita moschata (Rifu)	cmolsiB692
Lsi07G001740	Cla014485	Watermelon (97103) v1	lsiwmB439
Lsi07G001740	MELO3C017585	Melon (DHL92) v3.5.1	lsimeB454
Lsi07G001740	ClCG07G009520	Watermelon (Charleston Gray)	lsiwcgB413
Lsi07G001740	MELO3C017585.2	Melon (DHL92) v3.6.1	lsimedB471
Lsi07G001740	Cla97C07G136330	Watermelon (97103) v2	lsiwmbB412
Lsi07G001740	Bhi01G001933	Wax gourd	lsiwgoB555
Lsi07G001740	Cp4.1LG01g09430	Cucurbita pepo (Zucchini)	cpelsiB377
Lsi07G001740	CsGy4G004620	Cucumber (Gy14) v2	cgyblsiB277
Lsi07G001740	Carg14202	Silver-seed gourd	carlsiB859
Lsi07G001740	CsaV3_4G004770	Cucumber (Chinese Long) v3	cuclsiB322

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi07G001740	Silver-seed gourd	carlsiB935
Lsi07G001740	Cucumber (Chinese Long) v3	cuclsiB342
Lsi07G001740	Cucumber (Chinese Long) v3	cuclsiB497
Lsi07G001740	Watermelon (97103) v2	lsiwmbB389
Lsi07G001740	Wax gourd	lsiwgoB571
Lsi07G001740	Bottle gourd (USVL1VR-Ls)	lsilsiB083
Lsi07G001740	Cucurbita maxima (Rimu)	cmalsiB326
Lsi07G001740	Cucurbita moschata (Rifu)	cmolsiB315
Lsi07G001740	Cucurbita pepo (Zucchini)	cpelsiB185
Lsi07G001740	Cucurbita pepo (Zucchini)	cpelsiB407
Lsi07G001740	Watermelon (97103) v1	lsiwmB452