Lsi06G016490 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G016490
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_74
Location	chr06 : 26778347 .. 26778556 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGATTGGGGGCCGGTGGTTATAGCGGTGGTGCTGTTCGTGCTTCTCAGTCCAGGCCTCCTCTTTCAGATCCCAGCCAGAGGAAGAGTCGTTGAATTTGGAAATATGCAGACAAGTGGAGCTTCCATTTTAGTCCACGCCATCATCTTCTTCGGCCTCATCACCATCTTCCTCATCGCCATCGGCGTTCACATCTACACTGGCTAA

mRNA sequence

ATGGCAGATTGGGGGCCGGTGGTTATAGCGGTGGTGCTGTTCGTGCTTCTCAGTCCAGGCCTCCTCTTTCAGATCCCAGCCAGAGGAAGAGTCGTTGAATTTGGAAATATGCAGACAAGTGGAGCTTCCATTTTAGTCCACGCCATCATCTTCTTCGGCCTCATCACCATCTTCCTCATCGCCATCGGCGTTCACATCTACACTGGCTAA

Coding sequence (CDS)

ATGGCAGATTGGGGGCCGGTGGTTATAGCGGTGGTGCTGTTCGTGCTTCTCAGTCCAGGCCTCCTCTTTCAGATCCCAGCCAGAGGAAGAGTCGTTGAATTTGGAAATATGCAGACAAGTGGAGCTTCCATTTTAGTCCACGCCATCATCTTCTTCGGCCTCATCACCATCTTCCTCATCGCCATCGGCGTTCACATCTACACTGGCTAA

Protein sequence

MADWGPVVIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIFFGLITIFLIAIGVHIYTG

Homology

[Close]

BLAST of Lsi06G016490 vs. TrEMBL
Match: A0A0A0LNK0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G001470 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.2e-27
Identity = 66/69 (95.65%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1  MADWGPVVIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIFFGLITIFLI 60
          MADWGPV+IAVVLFVLLSPGLLFQIPA+GRVVEFGNMQTSGASILVHAII+FGLITIFLI
Sbjct: 1  MADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLI 60

Query: 61 AIGVHIYTG 70
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

[Close]

BLAST of Lsi06G016490 vs. TrEMBL
Match: I1K6N1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_05G204400 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 4.9e-27
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 1   MADWGPVVIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIFFGLITIFLI 60
           MADWGPVVIAVVLFVLLSPGLLFQ+PARGRV EFGNMQTSGASILVHAII+FGLITIFLI
Sbjct: 35  MADWGPVVIAVVLFVLLSPGLLFQMPARGRVAEFGNMQTSGASILVHAIIYFGLITIFLI 94

Query: 61  AIGVHIYTG 70
           AIGVHIYTG
Sbjct: 95  AIGVHIYTG 103

[Close]

BLAST of Lsi06G016490 vs. TrEMBL
Match: A0A0B2QV82_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_039124 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 4.9e-27
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 1   MADWGPVVIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIFFGLITIFLI 60
           MADWGPVVIAVVLFVLLSPGLLFQ+PARGRV EFGNMQTSGASILVHAII+FGLITIFLI
Sbjct: 35  MADWGPVVIAVVLFVLLSPGLLFQMPARGRVAEFGNMQTSGASILVHAIIYFGLITIFLI 94

Query: 61  AIGVHIYTG 70
           AIGVHIYTG
Sbjct: 95  AIGVHIYTG 103

[Close]

BLAST of Lsi06G016490 vs. TrEMBL
Match: A0A151RRH0_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_033353 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 6.3e-27
Identity = 65/69 (94.20%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 1  MADWGPVVIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIFFGLITIFLI 60
          MADWGPVVIAVVLFVLLSPGLLFQIPARGRV EFGNMQTSGA+ILVHA+I+FGLITIFLI
Sbjct: 1  MADWGPVVIAVVLFVLLSPGLLFQIPARGRVAEFGNMQTSGAAILVHAVIYFGLITIFLI 60

Query: 61 AIGVHIYTG 70
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

[Close]

BLAST of Lsi06G016490 vs. TrEMBL
Match: Q7X9E3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G286200g PE=2 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.1e-26
Identity = 63/69 (91.30%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 1  MADWGPVVIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIFFGLITIFLI 60
          MADWGPV+IAVVLFVLLSPGLLFQIP+RGR+ EFGNMQTSGASILVHA+I+FGLITIFLI
Sbjct: 1  MADWGPVIIAVVLFVLLSPGLLFQIPSRGRIAEFGNMQTSGASILVHAVIYFGLITIFLI 60

Query: 61 AIGVHIYTG 70
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

[Close]

BLAST of Lsi06G016490 vs. TAIR10
Match: AT3G48660.1 (AT3G48660.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 122.1 bits (305), Expect = 1.4e-28
Identity = 62/69 (89.86%), Postives = 66/69 (95.65%), Query Frame = 1


Query: 1  MADWGPVVIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIFFGLITIFLI 60
          MADWGPVV+AV+LFVLL+PGLLFQIPARGRVVEFGNMQTSGASILVH IIFFGLITIF I
Sbjct: 1  MADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTI 60

Query: 61 AIGVHIYTG 70
          AI +HIYTG
Sbjct: 61 AIRLHIYTG 69

[Close]

BLAST of Lsi06G016490 vs. TAIR10
Match: AT5G63500.1 (AT5G63500.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 120.6 bits (301), Expect = 3.9e-28
Identity = 62/69 (89.86%), Postives = 66/69 (95.65%), Query Frame = 1


Query: 1  MADWGPVVIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIFFGLITIFLI 60
          MADWGPV+IAV+LFV+LSPGLLFQIPA GRVVEFGNMQTSGASILVHAIIFFGLITIF I
Sbjct: 1  MADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTI 60

Query: 61 AIGVHIYTG 70
          AI VHIY+G
Sbjct: 61 AINVHIYSG 69

[Close]

BLAST of Lsi06G016490 vs. TAIR10
Match: AT5G40980.1 (AT5G40980.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 99.0 bits (245), Expect = 1.2e-21
Identity = 48/66 (72.73%), Postives = 59/66 (89.39%), Query Frame = 1


Query: 2  ADWGPVVIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIFFGLITIFLIA 61
          ADWGPV++AV LF+LLSPGLLFQ+PAR RV+EFGNM TSG SILVHAII+F ++TI +IA
Sbjct: 3  ADWGPVIVAVALFILLSPGLLFQLPARTRVMEFGNMSTSGISILVHAIIYFCILTILIIA 62

Query: 62 IGVHIY 68
          I +HI+
Sbjct: 63 IQIHIH 68

[Close]

BLAST of Lsi06G016490 vs. TAIR10
Match: AT3G01940.1 (AT3G01940.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 97.1 bits (240), Expect = 4.7e-21
Identity = 49/66 (74.24%), Postives = 58/66 (87.88%), Query Frame = 1


Query: 2  ADWGPVVIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIFFGLITIFLIA 61
          ADWGPV +AVVLFV+LSPGLLFQ+PAR RV+E GNM TSG SILVHAI+FF +ITI +IA
Sbjct: 4  ADWGPVAVAVVLFVVLSPGLLFQLPARRRVLECGNMTTSGISILVHAILFFAIITILVIA 63

Query: 62 IGVHIY 68
          I +HI+
Sbjct: 64 IQIHIH 69

[Close]

BLAST of Lsi06G016490 vs. TAIR10
Match: AT3G27027.1 (AT3G27027.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 94.4 bits (233), Expect = 3.0e-20
Identity = 46/65 (70.77%), Postives = 57/65 (87.69%), Query Frame = 1


Query: 3  DWGPVVIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIFFGLITIFLIAI 62
          DWGPV++AV LF+LLSPGLLFQ+PAR RVVEFGNM TSG +ILVHA I+F ++TI +IAI
Sbjct: 4  DWGPVIVAVSLFILLSPGLLFQLPARTRVVEFGNMTTSGIAILVHAFIYFCILTILVIAI 63

Query: 63 GVHIY 68
           +HI+
Sbjct: 64 QIHIH 68

[Close]

BLAST of Lsi06G016490 vs. NCBI nr
Match: gi|449440538|ref|XP_004138041.1| (PREDICTED: uncharacterized protein LOC101212373 [Cucumis sativus])

HSP 1 Score: 129.0 bits (323), Expect = 3.1e-27
Identity = 66/69 (95.65%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1  MADWGPVVIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIFFGLITIFLI 60
          MADWGPV+IAVVLFVLLSPGLLFQIPA+GRVVEFGNMQTSGASILVHAII+FGLITIFLI
Sbjct: 1  MADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLI 60

Query: 61 AIGVHIYTG 70
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

[Close]

BLAST of Lsi06G016490 vs. NCBI nr
Match: gi|1012094223|ref|XP_015955605.1| (PREDICTED: uncharacterized protein LOC107479995 [Arachis duranensis])

HSP 1 Score: 128.3 bits (321), Expect = 5.3e-27
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 1  MADWGPVVIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIFFGLITIFLI 60
          MADWGPVVIAVVLFVLLSPGLLFQIP RGRVVEFGNMQTSGASI+VHAII+FGLITIFLI
Sbjct: 1  MADWGPVVIAVVLFVLLSPGLLFQIPGRGRVVEFGNMQTSGASIMVHAIIYFGLITIFLI 60

Query: 61 AIGVHIYTG 70
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

[Close]

BLAST of Lsi06G016490 vs. NCBI nr
Match: gi|356513423|ref|XP_003525413.1| (PREDICTED: uncharacterized protein LOC100805083 [Glycine max])

HSP 1 Score: 127.9 bits (320), Expect = 7.0e-27
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 1   MADWGPVVIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIFFGLITIFLI 60
           MADWGPVVIAVVLFVLLSPGLLFQ+PARGRV EFGNMQTSGASILVHAII+FGLITIFLI
Sbjct: 35  MADWGPVVIAVVLFVLLSPGLLFQMPARGRVAEFGNMQTSGASILVHAIIYFGLITIFLI 94

Query: 61  AIGVHIYTG 70
           AIGVHIYTG
Sbjct: 95  AIGVHIYTG 103

[Close]

BLAST of Lsi06G016490 vs. NCBI nr
Match: gi|1012333764|gb|KYP45147.1| (hypothetical protein KK1_033353 [Cajanus cajan])

HSP 1 Score: 127.5 bits (319), Expect = 9.1e-27
Identity = 65/69 (94.20%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 1  MADWGPVVIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIFFGLITIFLI 60
          MADWGPVVIAVVLFVLLSPGLLFQIPARGRV EFGNMQTSGA+ILVHA+I+FGLITIFLI
Sbjct: 1  MADWGPVVIAVVLFVLLSPGLLFQIPARGRVAEFGNMQTSGAAILVHAVIYFGLITIFLI 60

Query: 61 AIGVHIYTG 70
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

[Close]

BLAST of Lsi06G016490 vs. NCBI nr
Match: gi|593793969|ref|XP_007160023.1| (hypothetical protein PHAVU_002G286200g [Phaseolus vulgaris])

HSP 1 Score: 126.7 bits (317), Expect = 1.6e-26
Identity = 63/69 (91.30%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 1  MADWGPVVIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIFFGLITIFLI 60
          MADWGPV+IAVVLFVLLSPGLLFQIP+RGR+ EFGNMQTSGASILVHA+I+FGLITIFLI
Sbjct: 1  MADWGPVIIAVVLFVLLSPGLLFQIPSRGRIAEFGNMQTSGASILVHAVIYFGLITIFLI 60

Query: 61 AIGVHIYTG 70
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

The following BLAST results are available for this feature:

BLAST of Lsi06G016490 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi06G016490 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNK0_CUCSA	2.2e-27	95.65	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G001470 PE=4 SV=1	[more]
I1K6N1_SOYBN	4.9e-27	95.65	Uncharacterized protein OS=Glycine max GN=GLYMA_05G204400 PE=4 SV=1	[more]
A0A0B2QV82_GLYSO	4.9e-27	95.65	Uncharacterized protein OS=Glycine soja GN=glysoja_039124 PE=4 SV=1	[more]
A0A151RRH0_CAJCA	6.3e-27	94.20	Uncharacterized protein OS=Cajanus cajan GN=KK1_033353 PE=4 SV=1	[more]
Q7X9E3_PHAVU	1.1e-26	91.30	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G286200g PE=2 SV=1	[more]

BLAST of Lsi06G016490 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G48660.1	1.4e-28	89.86	Protein of unknown function (DUF 3339)	[more]
AT5G63500.1	3.9e-28	89.86	Protein of unknown function (DUF 3339)	[more]
AT5G40980.1	1.2e-21	72.73	Protein of unknown function (DUF 3339)	[more]
AT3G01940.1	4.7e-21	74.24	Protein of unknown function (DUF 3339)	[more]
AT3G27027.1	3.0e-20	70.77	Protein of unknown function (DUF 3339)	[more]

BLAST of Lsi06G016490 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449440538\|ref\|XP_004138041.1\|	3.1e-27	95.65	PREDICTED: uncharacterized protein LOC101212373 [Cucumis sativus]	[more]
gi\|1012094223\|ref\|XP_015955605.1\|	5.3e-27	95.65	PREDICTED: uncharacterized protein LOC107479995 [Arachis duranensis]	[more]
gi\|356513423\|ref\|XP_003525413.1\|	7.0e-27	95.65	PREDICTED: uncharacterized protein LOC100805083 [Glycine max]	[more]
gi\|1012333764\|gb\|KYP45147.1\|	9.1e-27	94.20	hypothetical protein KK1_033353 [Cajanus cajan]	[more]
gi\|593793969\|ref\|XP_007160023.1\|	1.6e-26	91.30	hypothetical protein PHAVU_002G286200g [Phaseolus vulgaris]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021775	DUF3339

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G016490.1	Lsi06G016490.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021775	Protein of unknown function DUF3339	PFAM	PF11820	DUF3339	coord: 1..67 score: 1.2
None	No IPR available	PANTHER	PTHR33128	FAMILY NOT NAMED	coord: 1..69 score: 1.5
None	No IPR available	PANTHER	PTHR33128:SF9	SUBFAMILY NOT NAMED	coord: 1..69 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi06G016490	Csa1G001470	Cucumber (Chinese Long) v2	culsiB070
Lsi06G016490	CSPI01G00460	Wild cucumber (PI 183967)	cpilsiB070
Lsi06G016490	Cucsa.157250	Cucumber (Gy14) v1	cgylsiB250
Lsi06G016490	CmaCh10G000540	Cucurbita maxima (Rimu)	cmalsiB072
Lsi06G016490	CmaCh17G014400	Cucurbita maxima (Rimu)	cmalsiB359
Lsi06G016490	CmoCh10G000470	Cucurbita moschata (Rifu)	cmolsiB058
Lsi06G016490	Cla019284	Watermelon (97103) v1	lsiwmB414
Lsi06G016490	MELO3C026199	Melon (DHL92) v3.5.1	lsimeB397
Lsi06G016490	ClCG06G018000	Watermelon (Charleston Gray)	lsiwcgB372
Lsi06G016490	MELO3C026199.2	Melon (DHL92) v3.6.1	lsimedB419
Lsi06G016490	Cla97C06G127730	Watermelon (97103) v2	lsiwmbB374
Lsi06G016490	Bhi02G000510	Wax gourd	lsiwgoB525
Lsi06G016490	Bhi08G001235	Wax gourd	lsiwgoB491
Lsi06G016490	Cp4.1LG18g09140	Cucurbita pepo (Zucchini)	cpelsiB298
Lsi06G016490	Carg10274	Silver-seed gourd	carlsiB331
Lsi06G016490	CsaV3_1G000470	Cucumber (Chinese Long) v3	cuclsiB081

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G016490	Bottle gourd (USVL1VR-Ls)	lsilsiB111
Lsi06G016490	Cucurbita maxima (Rimu)	cmalsiB135
Lsi06G016490	Cucurbita maxima (Rimu)	cmalsiB144
Lsi06G016490	Cucurbita maxima (Rimu)	cmalsiB219
Lsi06G016490	Cucurbita maxima (Rimu)	cmalsiB251
Lsi06G016490	Cucurbita maxima (Rimu)	cmalsiB392
Lsi06G016490	Cucurbita moschata (Rifu)	cmolsiB128
Lsi06G016490	Cucurbita moschata (Rifu)	cmolsiB133
Lsi06G016490	Cucurbita moschata (Rifu)	cmolsiB207
Lsi06G016490	Cucurbita moschata (Rifu)	cmolsiB239
Lsi06G016490	Cucurbita moschata (Rifu)	cmolsiB376
Lsi06G016490	Cucurbita pepo (Zucchini)	cpelsiB433
Lsi06G016490	Cucurbita pepo (Zucchini)	cpelsiB556
Lsi06G016490	Cucurbita pepo (Zucchini)	cpelsiB569
Lsi06G016490	Wild cucumber (PI 183967)	cpilsiB068
Lsi06G016490	Wild cucumber (PI 183967)	cpilsiB224
Lsi06G016490	Cucumber (Chinese Long) v2	culsiB067
Lsi06G016490	Cucumber (Chinese Long) v2	culsiB225
Lsi06G016490	Melon (DHL92) v3.5.1	lsimeB392
Lsi06G016490	Melon (DHL92) v3.5.1	lsimeB421
Lsi06G016490	Watermelon (Charleston Gray)	lsiwcgB363
Lsi06G016490	Watermelon (Charleston Gray)	lsiwcgB369
Lsi06G016490	Watermelon (97103) v1	lsiwmB394
Lsi06G016490	Cucumber (Gy14) v2	cgyblsiB064
Lsi06G016490	Cucumber (Gy14) v2	cgyblsiB067
Lsi06G016490	Cucumber (Gy14) v2	cgyblsiB214
Lsi06G016490	Melon (DHL92) v3.6.1	lsimedB414
Lsi06G016490	Silver-seed gourd	carlsiB397
Lsi06G016490	Silver-seed gourd	carlsiB554
Lsi06G016490	Cucumber (Chinese Long) v3	cuclsiB077
Lsi06G016490	Cucumber (Chinese Long) v3	cuclsiB247
Lsi06G016490	Watermelon (97103) v2	lsiwmbB364
Lsi06G016490	Watermelon (97103) v2	lsiwmbB371
Lsi06G016490	Wax gourd	lsiwgoB483