Carg10274 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg10274
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Protein of unknown function (DUF 3339)
Location	Cucurbita_argyrosperma_scaffold_047 : 183310 .. 183847 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACGAAGCATCAAAAGGTGTCTGTGCTGGAAAGTTGAATGTAACTGTAAGCAGCGTTAGTTCAATAAAGTTTTCATCTGACGATGCCTGAAAAATTAAATTAAGGAAAACCCAAAAATGGCACCGCCTCATCCGTCCACGTGAAGCATCAAGATCGATGCAGTCGCCGAATCACTGTACCGCTTCCAAGTTTGAAAACCCCCACGCCATTGCTTCGCCTTCTCATATCTTCCATCCTCCCAGCCCCATCCCCATCCCCATCGCCAAAACTCACAACTCCTTTTTCTGTGGTTCTGCAGGCGTAAAGTTGAACACACATCCATCCAATGGCAGATTGGGGGCCGGTCATTATAGCGGTGGTGCTGTTCGTGCTCCTCAGTCCGGGGCTGCTGTTTCAGATCCCAGCCAGAGGAAGGGTGGTTGAGTTTGGGAACATGCAGACAAGCGGGGCTTCCATTTTAGTCCACGCCATCATCTACTTCGGCCTCATCACCATCTTCCTCGTCGCCATCGGCGTCCACATCTACACTGGCTAA

mRNA sequence

ATGTACGAAGCATCAAAAGGCGTAAAGTTGAACACACATCCATCCAATGGCAGATTGGGGGCCGGTCATTATAGCGGTGGTGCTGTTCGTGCTCCTCAGTCCGGGGCTGCTATCCCAGCCAGAGGAAGGGTGGTTGAGTTTGGGAACATGCAGACAAGCGGGGCTTCCATTTTAGTCCACGCCATCATCTACTTCGGCCTCATCACCATCTTCCTCGTCGCCATCGGCGTCCACATCTACACTGGCTAA

Coding sequence (CDS)

ATGTACGAAGCATCAAAAGGCGTAAAGTTGAACACACATCCATCCAATGGCAGATTGGGGGCCGGTCATTATAGCGGTGGTGCTGTTCGTGCTCCTCAGTCCGGGGCTGCTATCCCAGCCAGAGGAAGGGTGGTTGAGTTTGGGAACATGCAGACAAGCGGGGCTTCCATTTTAGTCCACGCCATCATCTACTTCGGCCTCATCACCATCTTCCTCGTCGCCATCGGCGTCCACATCTACACTGGCTAA

Protein sequence

MYEASKGVKLNTHPSNGRLGAGHYSGGAVRAPQSGAAIPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLVAIGVHIYTG

Homology

[Close]

BLAST of Carg10274 vs. NCBI nr
Match: XP_022921425.1 (uncharacterized protein LOC111429708 [Cucurbita moschata])

HSP 1 Score: 86.7 bits (213), Expect = 4.1e-14
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 0


Query: 38  IPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLVAIGVHIYTG 83
           IPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLVAIGVHIYTG
Sbjct: 100 IPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLVAIGVHIYTG 144

[Close]

BLAST of Carg10274 vs. NCBI nr
Match: XP_022987136.1 (uncharacterized protein LOC111484778 [Cucurbita maxima])

HSP 1 Score: 86.7 bits (213), Expect = 4.1e-14
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 0


Query: 38 IPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLVAIGVHIYTG 83
          IPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLVAIGVHIYTG
Sbjct: 25 IPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLVAIGVHIYTG 69

[Close]

BLAST of Carg10274 vs. NCBI nr
Match: XP_023515465.1 (uncharacterized protein LOC111779615 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 86.3 bits (212), Expect = 5.4e-14
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 0


Query: 38 IPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLVAIGVHIYTG 83
          IPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLVAIGVH+YTG
Sbjct: 25 IPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLVAIGVHVYTG 69

[Close]

BLAST of Carg10274 vs. NCBI nr
Match: XP_004138041.1 (PREDICTED: uncharacterized protein LOC101212373 [Cucumis sativus] >XP_008464420.1 PREDICTED: uncharacterized protein LOC103502312 [Cucumis melo] >KGN63475.1 hypothetical protein Csa_1G001470 [Cucumis sativus])

HSP 1 Score: 85.1 bits (209), Expect = 1.2e-13
Identity = 43/45 (95.56%), Postives = 45/45 (100.00%), Query Frame = 0


Query: 38 IPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLVAIGVHIYTG 83
          IPA+GRVVEFGNMQTSGASILVHAIIYFGLITIFL+AIGVHIYTG
Sbjct: 25 IPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLIAIGVHIYTG 69

[Close]

BLAST of Carg10274 vs. NCBI nr
Match: OIW00263.1 (hypothetical protein TanjilG_27514 [Lupinus angustifolius])

HSP 1 Score: 84.7 bits (208), Expect = 1.6e-13
Identity = 43/45 (95.56%), Postives = 44/45 (97.78%), Query Frame = 0


Query: 38 IPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLVAIGVHIYTG 83
          IP RGRVVEFGNMQTSGASILVHAIIYFGLITIFL+AIGVHIYTG
Sbjct: 25 IPGRGRVVEFGNMQTSGASILVHAIIYFGLITIFLIAIGVHIYTG 69

[Close]

BLAST of Carg10274 vs. TAIR10
Match: AT3G48660.1 (Protein of unknown function (DUF 3339))

HSP 1 Score: 77.0 bits (188), Expect = 5.9e-15
Identity = 39/45 (86.67%), Postives = 42/45 (93.33%), Query Frame = 0


Query: 38 IPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLVAIGVHIYTG 83
          IPARGRVVEFGNMQTSGASILVH II+FGLITIF +AI +HIYTG
Sbjct: 25 IPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTIAIRLHIYTG 69

[Close]

BLAST of Carg10274 vs. TAIR10
Match: AT5G63500.1 (Protein of unknown function (DUF 3339))

HSP 1 Score: 76.3 bits (186), Expect = 1.0e-14
Identity = 39/45 (86.67%), Postives = 42/45 (93.33%), Query Frame = 0


Query: 38 IPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLVAIGVHIYTG 83
          IPA GRVVEFGNMQTSGASILVHAII+FGLITIF +AI VHIY+G
Sbjct: 25 IPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTIAINVHIYSG 69

[Close]

BLAST of Carg10274 vs. TAIR10
Match: AT5G40980.1 (Protein of unknown function (DUF 3339))

HSP 1 Score: 59.3 bits (142), Expect = 1.3e-09
Identity = 29/43 (67.44%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 38 IPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLVAIGVHIY 81
          +PAR RV+EFGNM TSG SILVHAIIYF ++TI ++AI +HI+
Sbjct: 26 LPARTRVMEFGNMSTSGISILVHAIIYFCILTILIIAIQIHIH 68

[Close]

BLAST of Carg10274 vs. TAIR10
Match: AT3G27027.1 (Protein of unknown function (DUF 3339))

HSP 1 Score: 57.0 bits (136), Expect = 6.3e-09
Identity = 28/43 (65.12%), Postives = 36/43 (83.72%), Query Frame = 0


Query: 38 IPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLVAIGVHIY 81
          +PAR RVVEFGNM TSG +ILVHA IYF ++TI ++AI +HI+
Sbjct: 26 LPARTRVVEFGNMTTSGIAILVHAFIYFCILTILVIAIQIHIH 68

[Close]

BLAST of Carg10274 vs. TAIR10
Match: AT5G08391.1 (Protein of unknown function (DUF 3339))

HSP 1 Score: 55.5 bits (132), Expect = 1.8e-08
Identity = 23/45 (51.11%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 38 IPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLVAIGVHIYTG 83
          +P R + VEFGN QTS  S++VH+++YF L+ +FL+A+ +HIY G
Sbjct: 25 LPGRQKYVEFGNFQTSAVSVIVHSLLYFSLVCVFLLALKIHIYIG 69

[Close]

BLAST of Carg10274 vs. TrEMBL
Match: tr|A0A1S3CLF1|A0A1S3CLF1_CUCME (uncharacterized protein LOC103502312 OS=Cucumis melo OX=3656 GN=LOC103502312 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 7.9e-14
Identity = 43/45 (95.56%), Postives = 45/45 (100.00%), Query Frame = 0


Query: 38 IPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLVAIGVHIYTG 83
          IPA+GRVVEFGNMQTSGASILVHAIIYFGLITIFL+AIGVHIYTG
Sbjct: 25 IPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLIAIGVHIYTG 69

[Close]

BLAST of Carg10274 vs. TrEMBL
Match: tr|A0A0A0LNK0|A0A0A0LNK0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001470 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 7.9e-14
Identity = 43/45 (95.56%), Postives = 45/45 (100.00%), Query Frame = 0


Query: 38 IPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLVAIGVHIYTG 83
          IPA+GRVVEFGNMQTSGASILVHAIIYFGLITIFL+AIGVHIYTG
Sbjct: 25 IPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLIAIGVHIYTG 69

[Close]

BLAST of Carg10274 vs. TrEMBL
Match: tr|A0A2K3NIL7|A0A2K3NIL7_TRIPR (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g026207 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.8e-13
Identity = 43/45 (95.56%), Postives = 44/45 (97.78%), Query Frame = 0


Query: 38 IPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLVAIGVHIYTG 83
          IPARGRV+EFGNMQTSGASILVHAIIYFGLITI LVAIGVHIYTG
Sbjct: 25 IPARGRVIEFGNMQTSGASILVHAIIYFGLITILLVAIGVHIYTG 69

[Close]

BLAST of Carg10274 vs. TrEMBL
Match: tr|I1K6N1|I1K6N1_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100805083 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.3e-13
Identity = 42/45 (93.33%), Postives = 44/45 (97.78%), Query Frame = 0


Query: 38  IPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLVAIGVHIYTG 83
           +PARGRV EFGNMQTSGASILVHAIIYFGLITIFL+AIGVHIYTG
Sbjct: 59  MPARGRVAEFGNMQTSGASILVHAIIYFGLITIFLIAIGVHIYTG 103

[Close]

BLAST of Carg10274 vs. TrEMBL
Match: tr|A0A0B2QV82|A0A0B2QV82_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=glysoja_039124 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.3e-13
Identity = 42/45 (93.33%), Postives = 44/45 (97.78%), Query Frame = 0


Query: 38  IPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLVAIGVHIYTG 83
           +PARGRV EFGNMQTSGASILVHAIIYFGLITIFL+AIGVHIYTG
Sbjct: 59  MPARGRVAEFGNMQTSGASILVHAIIYFGLITIFLIAIGVHIYTG 103

The following BLAST results are available for this feature:

BLAST of Carg10274 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022921425.1	4.1e-14	100.00	uncharacterized protein LOC111429708 [Cucurbita moschata]	[more]
XP_022987136.1	4.1e-14	100.00	uncharacterized protein LOC111484778 [Cucurbita maxima]	[more]
XP_023515465.1	5.4e-14	97.78	uncharacterized protein LOC111779615 [Cucurbita pepo subsp. pepo]	[more]
XP_004138041.1	1.2e-13	95.56	PREDICTED: uncharacterized protein LOC101212373 [Cucumis sativus] >XP_008464420....	[more]
OIW00263.1	1.6e-13	95.56	hypothetical protein TanjilG_27514 [Lupinus angustifolius]	[more]

BLAST of Carg10274 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G48660.1	5.9e-15	86.67	Protein of unknown function (DUF 3339)	[more]
AT5G63500.1	1.0e-14	86.67	Protein of unknown function (DUF 3339)	[more]
AT5G40980.1	1.3e-09	67.44	Protein of unknown function (DUF 3339)	[more]
AT3G27027.1	6.3e-09	65.12	Protein of unknown function (DUF 3339)	[more]
AT5G08391.1	1.8e-08	51.11	Protein of unknown function (DUF 3339)	[more]

BLAST of Carg10274 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg10274 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CLF1\|A0A1S3CLF1_CUCME	7.9e-14	95.56	uncharacterized protein LOC103502312 OS=Cucumis melo OX=3656 GN=LOC103502312 PE=...	[more]
tr\|A0A0A0LNK0\|A0A0A0LNK0_CUCSA	7.9e-14	95.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001470 PE=4 SV=1	[more]
tr\|A0A2K3NIL7\|A0A2K3NIL7_TRIPR	1.8e-13	95.56	Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g026207 PE=4 SV=1	[more]
tr\|I1K6N1\|I1K6N1_SOYBN	2.3e-13	93.33	Uncharacterized protein OS=Glycine max OX=3847 GN=100805083 PE=4 SV=1	[more]
tr\|A0A0B2QV82\|A0A0B2QV82_GLYSO	2.3e-13	93.33	Uncharacterized protein OS=Glycine soja OX=3848 GN=glysoja_039124 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021775	DUF3339

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg10274-RA	Carg10274-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021775	Protein of unknown function DUF3339	PFAM	PF11820	DUF3339	coord: 38..80 e-value: 1.7E-19 score: 69.7
IPR021775	Protein of unknown function DUF3339	PANTHER	PTHR33128	FAMILY NOT NAMED	coord: 37..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR33128:SF17	SUBFAMILY NOT NAMED	coord: 37..82

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg10274	Cla019284	Watermelon (97103) v1	carwmB0356
Carg10274	Csa1G001470	Cucumber (Chinese Long) v2	carcuB0391
Carg10274	MELO3C026199	Melon (DHL92) v3.5.1	carmeB0369
Carg10274	ClCG06G018000	Watermelon (Charleston Gray)	carwcgB0357
Carg10274	CSPI01G00460	Wild cucumber (PI 183967)	carcpiB0396
Carg10274	Cucsa.157250	Cucumber (Gy14) v1	carcgyB0422
Carg10274	CmaCh10G000540	Cucurbita maxima (Rimu)	carcmaB0510
Carg10274	CmoCh10G000470	Cucurbita moschata (Rifu)	carcmoB0493
Carg10274	Lsi06G016490	Bottle gourd (USVL1VR-Ls)	carlsiB331
Carg10274	Cp4.1LG18g09140	Cucurbita pepo (Zucchini)	carcpeB0508
Carg10274	MELO3C026199.2	Melon (DHL92) v3.6.1	carmedB0375
Carg10274	CsaV3_1G000470	Cucumber (Chinese Long) v3	carcucB0395
Carg10274	Cla97C06G127730	Watermelon (97103) v2	carwmbB0382
Carg10274	Bhi08G001235	Wax gourd	carwgoB0445
Carg10274	Bhi02G000510	Wax gourd	carwgoB0448

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg10274	Carg11600	Silver-seed gourd	carcarB012

The following block(s) are covering this gene:


Gene	Organism	Block
Carg10274	Silver-seed gourd	carcarB387
Carg10274	Silver-seed gourd	carcarB388
Carg10274	Silver-seed gourd	carcarB390
Carg10274	Silver-seed gourd	carcarB391
Carg10274	Silver-seed gourd	carcarB395
Carg10274	Cucumber (Gy14) v2	carcgybB0371
Carg10274	Cucumber (Gy14) v2	carcgybB0373
Carg10274	Cucumber (Gy14) v1	carcgyB0424
Carg10274	Cucurbita maxima (Rimu)	carcmaB0511
Carg10274	Cucurbita maxima (Rimu)	carcmaB0513
Carg10274	Cucurbita maxima (Rimu)	carcmaB0515
Carg10274	Cucurbita maxima (Rimu)	carcmaB0516
Carg10274	Cucurbita moschata (Rifu)	carcmoB0494
Carg10274	Cucurbita moschata (Rifu)	carcmoB0495
Carg10274	Cucurbita moschata (Rifu)	carcmoB0497
Carg10274	Cucurbita moschata (Rifu)	carcmoB0498
Carg10274	Cucurbita moschata (Rifu)	carcmoB0500
Carg10274	Cucurbita pepo (Zucchini)	carcpeB0507
Carg10274	Cucurbita pepo (Zucchini)	carcpeB0510
Carg10274	Cucurbita pepo (Zucchini)	carcpeB0513
Carg10274	Cucurbita pepo (Zucchini)	carcpeB0514
Carg10274	Wild cucumber (PI 183967)	carcpiB0398
Carg10274	Cucumber (Chinese Long) v2	carcuB0393
Carg10274	Cucumber (Chinese Long) v3	carcucB0397
Carg10274	Bottle gourd (USVL1VR-Ls)	carlsiB330
Carg10274	Melon (DHL92) v3.5.1	carmeB0366
Carg10274	Melon (DHL92) v3.6.1	carmedB0372
Carg10274	Watermelon (Charleston Gray)	carwcgB0356
Carg10274	Watermelon (97103) v1	carwmB0354
Carg10274	Watermelon (97103) v2	carwmbB0379
Carg10274	Watermelon (97103) v2	carwmbB0381