Csa1G001470 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G001470
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Putative uncharacterized protein OSJNBa0052M16.13; contains IPR021775 (Protein of unknown function DUF3339)
Location	Chr1 : 247573 .. 248331 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGAAAAAAACAAATAAAAGAAATGTGAAAGGCTCATCCGTCCACGTGAAGCATCAAGATCAACGCAGTTGTCGAATCAGTGTCCAGCTTCCAAGTTTCAAAACCACTCCATTTCTTTACCCTTCTCAAATCTTCTCAACTTAAAACCACACCATCCCTATTCATCCCCAATCCCAAATCCCACTTTCTTTCTTCTTTAATCTTTAGTTTTAAGACTCATAATGGCTGATTGGGGGCCGGTGATTATAGCGGTGGTGCTCTTCGTCCTGCTCAGTCCAGGCCTTCTCTTTCAGATCCCAGCCAAAGGAAGAGTTGTTGAATTCGGAAACATGCAGACTAGTGGGGCTTCCATTTTAGTCCACGCCATCATCTACTTTGGCCTCATCACTATCTTCCTCATCGCCATCGGTGTTCATATCTACACTGGCTAAAACCCAACTCCCCTCTTCTCTTTAATCTACTCTGTACTGCCTTTTCTTTCTCTTTCTTGTTCTATAATCGATGGATTGTTGTCTGTTATGTGACTTGTGACTTTTACTGTCTAGTTGGAGTTTCAACGATTGCGATTGTAAAATTGGTTTGATTTTAAACGCGATTTATAAATTGAATGGCTGCTGTTGGGTGTTGGGTGTTGGGTGTTTGGTACAGATTCAGGGAAAAAGATTCCGATATACGATTCCCATAGGGTTTATATGACCATTTACATCTGCTTTTACCGTTTCATTCTCTTTCTCGTCGTTTGGGTTTCGATGGCCCCCG

mRNA sequence

ATGGCTGATTGGGGGCCGGTGATTATAGCGGTGGTGCTCTTCGTCCTGCTCAGTCCAGGCCTTCTCTTTCAGATCCCAGCCAAAGGAAGAGTTGTTGAATTCGGAAACATGCAGACTAGTGGGGCTTCCATTTTAGTCCACGCCATCATCTACTTTGGCCTCATCACTATCTTCCTCATCGCCATCGGTGTTCATATCTACACTGGCTAA

Coding sequence (CDS)

ATGGCTGATTGGGGGCCGGTGATTATAGCGGTGGTGCTCTTCGTCCTGCTCAGTCCAGGCCTTCTCTTTCAGATCCCAGCCAAAGGAAGAGTTGTTGAATTCGGAAACATGCAGACTAGTGGGGCTTCCATTTTAGTCCACGCCATCATCTACTTTGGCCTCATCACTATCTTCCTCATCGCCATCGGTGTTCATATCTACACTGGCTAA

Protein sequence

MADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLIAIGVHIYTG*

Homology

[Close]

BLAST of Csa1G001470 vs. TrEMBL
Match: A0A0A0LNK0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G001470 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 4.8e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1  MADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLI 60
          MADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLI
Sbjct: 1  MADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLI 60

Query: 61 AIGVHIYTG 70
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

[Close]

BLAST of Csa1G001470 vs. TrEMBL
Match: I1K6N1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_05G204400 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 9.0e-29
Identity = 65/69 (94.20%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 1   MADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLI 60
           MADWGPV+IAVVLFVLLSPGLLFQ+PA+GRV EFGNMQTSGASILVHAIIYFGLITIFLI
Sbjct: 35  MADWGPVVIAVVLFVLLSPGLLFQMPARGRVAEFGNMQTSGASILVHAIIYFGLITIFLI 94

Query: 61  AIGVHIYTG 70
           AIGVHIYTG
Sbjct: 95  AIGVHIYTG 103

[Close]

BLAST of Csa1G001470 vs. TrEMBL
Match: A0A0B2QV82_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_039124 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 9.0e-29
Identity = 65/69 (94.20%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 1   MADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLI 60
           MADWGPV+IAVVLFVLLSPGLLFQ+PA+GRV EFGNMQTSGASILVHAIIYFGLITIFLI
Sbjct: 35  MADWGPVVIAVVLFVLLSPGLLFQMPARGRVAEFGNMQTSGASILVHAIIYFGLITIFLI 94

Query: 61  AIGVHIYTG 70
           AIGVHIYTG
Sbjct: 95  AIGVHIYTG 103

[Close]

BLAST of Csa1G001470 vs. TrEMBL
Match: Q7X9E3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G286200g PE=2 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.2e-28
Identity = 64/69 (92.75%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 1  MADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLI 60
          MADWGPVIIAVVLFVLLSPGLLFQIP++GR+ EFGNMQTSGASILVHA+IYFGLITIFLI
Sbjct: 1  MADWGPVIIAVVLFVLLSPGLLFQIPSRGRIAEFGNMQTSGASILVHAVIYFGLITIFLI 60

Query: 61 AIGVHIYTG 70
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

[Close]

BLAST of Csa1G001470 vs. TrEMBL
Match: A0A151RRH0_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_033353 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.2e-28
Identity = 64/69 (92.75%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 1  MADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLI 60
          MADWGPV+IAVVLFVLLSPGLLFQIPA+GRV EFGNMQTSGA+ILVHA+IYFGLITIFLI
Sbjct: 1  MADWGPVVIAVVLFVLLSPGLLFQIPARGRVAEFGNMQTSGAAILVHAVIYFGLITIFLI 60

Query: 61 AIGVHIYTG 70
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

[Close]

BLAST of Csa1G001470 vs. TAIR10
Match: AT5G63500.1 (AT5G63500.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 125.6 bits (314), Expect = 1.2e-29
Identity = 61/69 (88.41%), Postives = 64/69 (92.75%), Query Frame = 1


Query: 1  MADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLI 60
          MADWGPV+IAV+LFV+LSPGLLFQIPA GRVVEFGNMQTSGASILVHAII+FGLITIF I
Sbjct: 1  MADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTI 60

Query: 61 AIGVHIYTG 70
          AI VHIY+G
Sbjct: 61 AINVHIYSG 69

[Close]

BLAST of Csa1G001470 vs. TAIR10
Match: AT3G48660.1 (AT3G48660.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 125.2 bits (313), Expect = 1.6e-29
Identity = 59/69 (85.51%), Postives = 64/69 (92.75%), Query Frame = 1


Query: 1  MADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLI 60
          MADWGPV++AV+LFVLL+PGLLFQIPA+GRVVEFGNMQTSGASILVH II+FGLITIF I
Sbjct: 1  MADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTI 60

Query: 61 AIGVHIYTG 70
          AI +HIYTG
Sbjct: 61 AIRLHIYTG 69

[Close]

BLAST of Csa1G001470 vs. TAIR10
Match: AT5G40980.1 (AT5G40980.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 105.9 bits (263), Expect = 1.0e-23
Identity = 49/66 (74.24%), Postives = 57/66 (86.36%), Query Frame = 1


Query: 2  ADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLIA 61
          ADWGPVI+AV LF+LLSPGLLFQ+PA+ RV+EFGNM TSG SILVHAIIYF ++TI +IA
Sbjct: 3  ADWGPVIVAVALFILLSPGLLFQLPARTRVMEFGNMSTSGISILVHAIIYFCILTILIIA 62

Query: 62 IGVHIY 68
          I +HI+
Sbjct: 63 IQIHIH 68

[Close]

BLAST of Csa1G001470 vs. TAIR10
Match: AT3G27027.1 (AT3G27027.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 101.3 bits (251), Expect = 2.5e-22
Identity = 47/65 (72.31%), Postives = 55/65 (84.62%), Query Frame = 1


Query: 3  DWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLIAI 62
          DWGPVI+AV LF+LLSPGLLFQ+PA+ RVVEFGNM TSG +ILVHA IYF ++TI +IAI
Sbjct: 4  DWGPVIVAVSLFILLSPGLLFQLPARTRVVEFGNMTTSGIAILVHAFIYFCILTILVIAI 63

Query: 63 GVHIY 68
           +HI+
Sbjct: 64 QIHIH 68

[Close]

BLAST of Csa1G001470 vs. TAIR10
Match: AT3G01940.1 (AT3G01940.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 100.5 bits (249), Expect = 4.3e-22
Identity = 47/66 (71.21%), Postives = 56/66 (84.85%), Query Frame = 1


Query: 2  ADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLIA 61
          ADWGPV +AVVLFV+LSPGLLFQ+PA+ RV+E GNM TSG SILVHAI++F +ITI +IA
Sbjct: 4  ADWGPVAVAVVLFVVLSPGLLFQLPARRRVLECGNMTTSGISILVHAILFFAIITILVIA 63

Query: 62 IGVHIY 68
          I +HI+
Sbjct: 64 IQIHIH 69

[Close]

BLAST of Csa1G001470 vs. NCBI nr
Match: gi|449440538|ref|XP_004138041.1| (PREDICTED: uncharacterized protein LOC101212373 [Cucumis sativus])

HSP 1 Score: 137.9 bits (346), Expect = 6.8e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1  MADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLI 60
          MADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLI
Sbjct: 1  MADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLI 60

Query: 61 AIGVHIYTG 70
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

[Close]

BLAST of Csa1G001470 vs. NCBI nr
Match: gi|1012094223|ref|XP_015955605.1| (PREDICTED: uncharacterized protein LOC107479995 [Arachis duranensis])

HSP 1 Score: 134.0 bits (336), Expect = 9.9e-29
Identity = 65/69 (94.20%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 1  MADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLI 60
          MADWGPV+IAVVLFVLLSPGLLFQIP +GRVVEFGNMQTSGASI+VHAIIYFGLITIFLI
Sbjct: 1  MADWGPVVIAVVLFVLLSPGLLFQIPGRGRVVEFGNMQTSGASIMVHAIIYFGLITIFLI 60

Query: 61 AIGVHIYTG 70
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

[Close]

BLAST of Csa1G001470 vs. NCBI nr
Match: gi|356513423|ref|XP_003525413.1| (PREDICTED: uncharacterized protein LOC100805083 [Glycine max])

HSP 1 Score: 133.7 bits (335), Expect = 1.3e-28
Identity = 65/69 (94.20%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 1   MADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLI 60
           MADWGPV+IAVVLFVLLSPGLLFQ+PA+GRV EFGNMQTSGASILVHAIIYFGLITIFLI
Sbjct: 35  MADWGPVVIAVVLFVLLSPGLLFQMPARGRVAEFGNMQTSGASILVHAIIYFGLITIFLI 94

Query: 61  AIGVHIYTG 70
           AIGVHIYTG
Sbjct: 95  AIGVHIYTG 103

[Close]

BLAST of Csa1G001470 vs. NCBI nr
Match: gi|802770909|ref|XP_012090676.1| (PREDICTED: uncharacterized protein LOC105648784 [Jatropha curcas])

HSP 1 Score: 133.3 bits (334), Expect = 1.7e-28
Identity = 64/69 (92.75%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 1  MADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLI 60
          MADWGPVI+AVVLFVLL+PGLLFQIP KGRVVEFGNMQTSGASI+VHAIIYFGL+TIFLI
Sbjct: 1  MADWGPVIVAVVLFVLLTPGLLFQIPGKGRVVEFGNMQTSGASIIVHAIIYFGLLTIFLI 60

Query: 61 AIGVHIYTG 70
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

[Close]

BLAST of Csa1G001470 vs. NCBI nr
Match: gi|593793969|ref|XP_007160023.1| (hypothetical protein PHAVU_002G286200g [Phaseolus vulgaris])

HSP 1 Score: 133.3 bits (334), Expect = 1.7e-28
Identity = 64/69 (92.75%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 1  MADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLI 60
          MADWGPVIIAVVLFVLLSPGLLFQIP++GR+ EFGNMQTSGASILVHA+IYFGLITIFLI
Sbjct: 1  MADWGPVIIAVVLFVLLSPGLLFQIPSRGRIAEFGNMQTSGASILVHAVIYFGLITIFLI 60

Query: 61 AIGVHIYTG 70
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

The following BLAST results are available for this feature:

BLAST of Csa1G001470 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNK0_CUCSA	4.8e-30	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G001470 PE=4 SV=1	[more]
I1K6N1_SOYBN	9.0e-29	94.20	Uncharacterized protein OS=Glycine max GN=GLYMA_05G204400 PE=4 SV=1	[more]
A0A0B2QV82_GLYSO	9.0e-29	94.20	Uncharacterized protein OS=Glycine soja GN=glysoja_039124 PE=4 SV=1	[more]
Q7X9E3_PHAVU	1.2e-28	92.75	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G286200g PE=2 SV=1	[more]
A0A151RRH0_CAJCA	1.2e-28	92.75	Uncharacterized protein OS=Cajanus cajan GN=KK1_033353 PE=4 SV=1	[more]

BLAST of Csa1G001470 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G63500.1	1.2e-29	88.41	Protein of unknown function (DUF 3339)	[more]
AT3G48660.1	1.6e-29	85.51	Protein of unknown function (DUF 3339)	[more]
AT5G40980.1	1.0e-23	74.24	Protein of unknown function (DUF 3339)	[more]
AT3G27027.1	2.5e-22	72.31	Protein of unknown function (DUF 3339)	[more]
AT3G01940.1	4.3e-22	71.21	Protein of unknown function (DUF 3339)	[more]

BLAST of Csa1G001470 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449440538\|ref\|XP_004138041.1\|	6.8e-30	100.00	PREDICTED: uncharacterized protein LOC101212373 [Cucumis sativus]	[more]
gi\|1012094223\|ref\|XP_015955605.1\|	9.9e-29	94.20	PREDICTED: uncharacterized protein LOC107479995 [Arachis duranensis]	[more]
gi\|356513423\|ref\|XP_003525413.1\|	1.3e-28	94.20	PREDICTED: uncharacterized protein LOC100805083 [Glycine max]	[more]
gi\|802770909\|ref\|XP_012090676.1\|	1.7e-28	92.75	PREDICTED: uncharacterized protein LOC105648784 [Jatropha curcas]	[more]
gi\|593793969\|ref\|XP_007160023.1\|	1.7e-28	92.75	hypothetical protein PHAVU_002G286200g [Phaseolus vulgaris]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021775	DUF3339

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU107708	cucumber EST collection version 3.0	transcribed_cluster
CU147055	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G001470.1	Csa1G001470.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU107708	CU107708	transcribed_cluster
CU147055	CU147055	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021775	Protein of unknown function DUF3339	PFAM	PF11820	DUF3339	coord: 1..67 score: 5.5
None	No IPR available	PANTHER	PTHR33128	FAMILY NOT NAMED	coord: 1..69 score: 7.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G001470	Cla019284	Watermelon (97103) v1	cuwmB094
Csa1G001470	MELO3C026199	Melon (DHL92) v3.5.1	cumeB054
Csa1G001470	ClCG06G018000	Watermelon (Charleston Gray)	cuwcgB081
Csa1G001470	Lsi06G016490	Bottle gourd (USVL1VR-Ls)	culsiB070
Csa1G001470	MELO3C026199.2	Melon (DHL92) v3.6.1	cumedB046
Csa1G001470	Cla97C06G127730	Watermelon (97103) v2	cuwmbB078
Csa1G001470	Bhi08G001235	Wax gourd	cuwgoB061
Csa1G001470	Bhi02G000510	Wax gourd	cuwgoB079
Csa1G001470	CSPI01G00460	Wild cucumber (PI 183967)	cpicuB000
Csa1G001470	Cucsa.157250	Cucumber (Gy14) v1	cgycuB224
Csa1G001470	CmaCh10G000540	Cucurbita maxima (Rimu)	cmacuB048
Csa1G001470	CmoCh10G000470	Cucurbita moschata (Rifu)	cmocuB037
Csa1G001470	Cp4.1LG18g09140	Cucurbita pepo (Zucchini)	cpecuB361
Csa1G001470	Carg10274	Silver-seed gourd	carcuB0391

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G001470	Cucurbita pepo (Zucchini)	cpecuB513
Csa1G001470	Cucurbita pepo (Zucchini)	cpecuB653
Csa1G001470	Bottle gourd (USVL1VR-Ls)	culsiB041
Csa1G001470	Cucumber (Gy14) v2	cgybcuB001
Csa1G001470	Cucumber (Gy14) v2	cgybcuB014
Csa1G001470	Cucumber (Gy14) v2	cgybcuB096
Csa1G001470	Melon (DHL92) v3.6.1	cumedB018
Csa1G001470	Silver-seed gourd	carcuB0636
Csa1G001470	Watermelon (97103) v2	cuwmbB050
Csa1G001470	Watermelon (97103) v2	cuwmbB063
Csa1G001470	Cucumber (Chinese Long) v2	cucuB002
Csa1G001470	Cucumber (Chinese Long) v2	cucuB014
Csa1G001470	Cucurbita maxima (Rimu)	cmacuB086
Csa1G001470	Cucurbita maxima (Rimu)	cmacuB225
Csa1G001470	Cucurbita moschata (Rifu)	cmocuB076
Csa1G001470	Cucurbita moschata (Rifu)	cmocuB211
Csa1G001470	Cucurbita moschata (Rifu)	cmocuB393
Csa1G001470	Melon (DHL92) v3.5.1	cumeB022
Csa1G001470	Melon (DHL92) v3.5.1	cumeB078
Csa1G001470	Watermelon (Charleston Gray)	cuwcgB052
Csa1G001470	Watermelon (Charleston Gray)	cuwcgB065
Csa1G001470	Watermelon (97103) v1	cuwmB028