Lsi06G006820 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G006820
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Vacuolar protein sorting-associated protein, putative
Location	chr06 : 10649897 .. 10654316 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAATTTTCCTTAATTTTGTTCCTTGCACCCGAAATGAAAGTTACAAACCACCAGAGAAGCCAGAGAGACGGACAGAAAGAAATAGCGGCAAAATAGCACAGAGAGATTAAGAGAATGCTGAGGCAGAGCCGGCGAGATTGAGCCAGGGGTCGAGAGAGATTTCCAGAACGGAGAGTGATTGAATGAATCGGTGAGAGCGCGATTGATTGACGGCGAGATTCAGGGAGAGAAAAAGAGAGAATTCTTATTCTTCAACCAAATAATCCCAGGCTAACCTGCCCAGAAACCCAACAATAATCAGATGAACTTAGACGGGTTTACTTGTTGGTGGCAGCGTTTTTAGGGAGAATAGTGTGAGAATGTTTGAAGGACTCGTTGGACAACTTCTTGTGGGTTATTTGGGCCGATATGTCAAGGATATTCAGAAGGAGAAGCTGAAGATTACATTTTGGAATGGTTTGTTCATCTGATTATACTCTATAAACAATTTTAGCTTTGTTTGCATTACCTTTCATTTGTAGAACTAGTTAAGTTGCTTCGGTGGGTGGAGCTGCCATCGTCTCAAACTGATGCTAATACTTCCTTGTGCTCGCATATAAGGATCATCGAACCGTGCGGTTCATGGCTATCTGGAATACGCTCATTGGACAAATGGGTCGCCGCTTTTCTATACATCGAACCAAGCCAAAGCATAGCCTGCCATGCCGAAAGCTACTATCTCCCTTATCTCCGCTTCACTCATCTTATGACTGGGAAATGAAGTCCTGTCTGAAATATTTATTTATCAGGGTTGGTCCTGCCTATCAAACAGCGGAAATTCTCCATTACTTTTCGTCAATTGACCTTCCTTCACTTCTAGTTTATTTACATCACTCTTCCTCTGTAACTATAGGATACCTCGGTGTCTGGAGTTTAGTACAGTGCACATACTTTCAAGAAGTTTTACTTCTCCCAAAGCTAGTGTTCCCACCTCTTCCCAACAAGATACCTCGTCTTTCTATATAACATCCCACTTGAGCAAATTCTCCCACCTGTACATGATTAAGGCACACCCTTCTTTTAACATCCCCACTCCATGATAAGTCCAGTTTTTCATTAAAAAGAAAAAAAAAAGAATCTCCAGTCCATTACTCATTTCTCCTCCCCTTTCTGTTAGAGCCATGCACCTCTCTTTGTGCATAAGTGAAACTGAAAACCTCAGCCGAACCCTCTCTTGTTTGAATATTTTATGGTATGAAACAGATAGTATATTGTTCGAAATTTTCTCAACCCAAAGTCTACAATTATTGCACATTTACTCCTGAAAGAATCTTTTGTCTCTTGGAGAGTAGTAAGCTCCATGAAATAACTGTAAAGCGAAGAGATAGAGACAAAATGAGTAGAGAGTGTAGAAAAGGAAGGTCTCCCAACTTCTTTGATATATCCGTTGTGTTATATTTAAGAGATATCTTGTTGATGGCCAAATTTATATTTTTCATTTTTGTATACATAGTAGATGTAGAAGTTTTGATTACGACGGAGTTTGCAGGTGTGTTGGTACTGTTCTGATAGATTTTATGATGTTCTGATAGTTTTGATTTTGTGATTTTATTTTTATAGGTTTCATTGTGACTTTTCTAGTATCAATAATAAAAAGCTTTTGCTTCTTCCTTCCTTCTTCTTTCATCTTCTTAAATGAAGTTTCAATTAAGAAGGGTTGAAATTAAAGTGTTAAAGTGAGCTTGGATCAGTGGTATTTGCATGCCCTCCGTCCCTTGAGGTTGGAGGTTCAATCCTCCACCCCTGCAATTGTTGTACTTAGAAAAAAAAACTAGTTAAGGTATATACACTTTCAATCAAAATATAAAAAATTTCAATTTTTCCATCTCACAAGTTGTTTAAAAAAAAACAAAAAAAATTTAAGAAGTGTTGAAATGCAATAATGGCTAACAGTAGAATTGGCATTTGTTTCCATTGAAGCATTGCAATTTATTTGGGTCTAGTTAGGCATATTTGTTTGTTTTGGGAATTCTTTTCACAATTGAACTTTTATGCAATGTTAATAACTTTTCCTCTTATAAATGAAATTTCCTTGAGATGAAAAATAGCTCAAAATGGTGCATATCTATGTTATTGCTATTATTTTAAATTTTCTATATCAATCAGTTCTAAGAGCCACACTTACTACTTATGCAGAGGAAATATTATTGGAGAATGTTGAGCTCATTCTAGAGGCCTTTGATTATCTTCAATTGCCATTTGCCCTAAAGCAAGGTATTTTTAAGTTCATTGGCAAAATGGACAAGCAGAACATGTTTGGTATTGATACATAACATGTTTTGCTTTTTCATACACATATTAGGAATGTACAAGCATTGCTTAATGGATTGTCTTCAGCATCTTGTTATTATCTTTTTTATTCGTCTCCAATCAATTGGCTCAACTTAACAAATTACTTTTGCTCCAATCAAGAGCCAGATTTTTTCTCTCCAAATTACTTGTGGGGGACTTTTATTTTTTTCTTGTTCATGGTTCTCTTGGGATTGTACTTTTTAAGTATTCTGGCTCTTTGTTTTGTATCCTTGTATTTTGAGCAATAGTCTATTTTCATTTTATCAATGAAAAATTATGTTTCCTTTAAAAAAATAAAAATTGGCTCAAATTAACATTGAGATATTGCAACTTTTTTTCCCTCTTGTTTTGGTGCAATTGCTTTTGAGACCAACATTTGGTTGTCAGGATACTTAAGGTTTGAACCTATACCCTGAAACTCCAGTTCACTAATAGGTTTGAAATTTGTATTCAAAATACATATCTCTCTTAGAATCACAGGACCACATTTCCTACTTTTGTGATTGTGCATCAATCTTTTGGAGGACTTACTGCCCTCTCATAGCTAGTCTACAGTTTCTCTCTCACTCTACTGGGTCATCCTTTTAAAATTGAGAAAAAGATTTTATGGTTTCACCTTGTATGTTCAATGAAACAATCTTTCAATTTTTTTTTACATTTTTTTTGAAACGGAAATGGTACTTTTCATTGATATGATGAAAAGAGCAATAACTCAATTACAAAGAAACAAAATATCCAAAAAATAAATGTGGATTAGTAGGTGCACTTGGACATCTCAACTAGGTTGACACTCCGATAGCACCCTCATGATATCCTATTCAAAATGCAAGAAATAAAATGCATCAAAGAGTACAATCATAATAAGATGCTTGGTTACATAGAGAAAATAAAGGCCTTCCAATTCAGGCAAATGTCTTGAGTAAAGTAATCACAAAAAAACTTGGATTGCGAACTCCAAGAAGAAGTTAAAAGACGGGCTGATCCCCATCTATCCTACAAATCTTTAGATGTATCATGAAAAACACGCTGATTACGCTCAAACCAAATCTCAGAAATCAAAGCTTTAACAACATTTGACCAAAGAAGTTGAGCTCTAAATGAAAGATGAGGACCGGTGAATAATTGCAGTAAATTCTCTCTTTCAATCTTTTTACATATAGACTAAAAAATTCAGGCATTTCATGCTTGATATTTTTTTGGGTCAATATTAATAGTTGTTTAAATAAAATTTTAAATTATTGTTCTTAAGTTTCATTTTCTTTTTTCACTATGGTAGGTCGTGTAGGGAGGTTAAGCATCAAGATTCCATGGAAAAAGCTTGGATGGGATCCGATCATTATTATTTTGGAGGATATATATATTTCTGCATCTCAACGGGATGATGAAGAGGTAATTAACCAAAGTTGCCTTTAATCCCACCATTGATCCAAAGGGATGAGGCCCATACTTGCTAACAATATCCTTATGCCATCATGTGGCTGCTTCATGGTTATTTAGGGTTCCTGGCTCGCACATATATGTAAAATTCAAAAAACAACTCTGGTTTAGTGGCTGTTGTGTATTTCTTTGGGTGATTTAGACAGAAAAAAAAAAGAAATTTCAATAATAATCAGAACCAACTTTGAGTTTTGCTCGTGTTGTTTCTTTACTTTTACATGCTGACTCGGAAATTAATTTTTTTTTAATTTCATTTTTTAATTTTTTTCCCATCTTTCTACTATATCAGTCAGTTGGAGTCTCTTTTTGAAACTCGTTTGGCCTTTTGGATATTCCATATCTCAGTAACACAATTGTTTTTTTGGGGTTTCTTTTTTGGAGGGCTCAATAACTCAATAGTTACTTACAAATGAACTATTGAATTAACGTGGGGACTTCAAAAAGGAGAATGGATAACTTTAAAATTAATATCCCCTTAATTTTTGGACATCTTTTTATTTGTTATAGTGGAACTCAGATGCAGTTGAAAAGAGAGAATTTGCTGGGAAGAAGGCCAAAATTGCTGCCGCAGAGCTGGCAAAATTGTCAAGGCGTGTATGTGGTGAGCTACTTGACTTCCATTCATTGCATTGGCAACATCTTTGCTTATAA

mRNA sequence

AGAATTTTCCTTAATTTTGTTCCTTGCACCCGAAATGAAAGTTACAAACCACCAGAGAAGCCAGAGAGACGGACAGAAAGAAATAGCGGCAAAATAGCACAGAGAGATTAAGAGAATGCTGAGGCAGAGCCGGCGAGATTGAGCCAGGGGTCGAGAGAGATTTCCAGAACGGAGAGTGATTGAATGAATCGGTGAGAGCGCGATTGATTGACGGCGAGATTCAGGGAGAGAAAAAGAGAGAATTCTTATTCTTCAACCAAATAATCCCAGGCTAACCTGCCCAGAAACCCAACAATAATCAGATGAACTTAGACGGGTTTACTTGTTGGTGGCAGCGTTTTTAGGGAGAATAGTGTGAGAATGTTTGAAGGACTCGTTGGACAACTTCTTGTGGGTTATTTGGGCCGATATGTCAAGGATATTCAGAAGGAGAAGCTGAAGATTACATTTTGGAATGAGGAAATATTATTGGAGAATGTTGAGCTCATTCTAGAGGCCTTTGATTATCTTCAATTGCCATTTGCCCTAAAGCAAGGTCGTGTAGGGAGGTTAAGCATCAAGATTCCATGGAAAAAGCTTGGATGGGATCCGATCATTATTATTTTGGAGGATATATATATTTCTGCATCTCAACGGGATGATGAAGAGTGGAACTCAGATGCAGTTGAAAAGAGAGAATTTGCTGGGAAGAAGGCCAAAATTGCTGCCGCAGAGCTGGCAAAATTGTCAAGGCGTGTATGTGGTGAGCTACTTGACTTCCATTCATTGCATTGGCAACATCTTTGCTTATAA

Coding sequence (CDS)

ATGTTTGAAGGACTCGTTGGACAACTTCTTGTGGGTTATTTGGGCCGATATGTCAAGGATATTCAGAAGGAGAAGCTGAAGATTACATTTTGGAATGAGGAAATATTATTGGAGAATGTTGAGCTCATTCTAGAGGCCTTTGATTATCTTCAATTGCCATTTGCCCTAAAGCAAGGTCGTGTAGGGAGGTTAAGCATCAAGATTCCATGGAAAAAGCTTGGATGGGATCCGATCATTATTATTTTGGAGGATATATATATTTCTGCATCTCAACGGGATGATGAAGAGTGGAACTCAGATGCAGTTGAAAAGAGAGAATTTGCTGGGAAGAAGGCCAAAATTGCTGCCGCAGAGCTGGCAAAATTGTCAAGGCGTGTATGTGGTGAGCTACTTGACTTCCATTCATTGCATTGGCAACATCTTTGCTTATAA

Protein sequence

MFEGLVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALKQGRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWNSDAVEKREFAGKKAKIAAAELAKLSRRVCGELLDFHSLHWQHLCL

Homology

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BLAST of Lsi06G006820 vs. Swiss-Prot
Match: VP13F_DICDI (Putative vacuolar protein sorting-associated protein 13F OS=Dictyostelium discoideum GN=vps13F PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.8e-19
Identity = 40/100 (40.00%), Postives = 64/100 (64.00%), Query Frame = 1


Query: 1   MFEGLVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALKQGR 60
           MFE +V  LL  YL  Y+K +  + L I+ W+  + LEN+EL   A +   LPF +K+G 
Sbjct: 1   MFESIVSNLLTRYLKEYIKALNTDNLNISIWSGNVSLENLELKSRALEKFNLPFTIKEGF 60

Query: 61  VGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWNSD 101
           +G+LS+KIPW  L  +P+I++++ +YI+AS +    WN +
Sbjct: 61  LGKLSLKIPWNNLKTEPVIVVIDQLYITASPKSTTVWNEE 100

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BLAST of Lsi06G006820 vs. Swiss-Prot
Match: VPS13_YEAST (Vacuolar protein sorting-associated protein 13 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VPS13 PE=1 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.3e-14
Identity = 42/124 (33.87%), Postives = 67/124 (54.03%), Query Frame = 1


Query: 1   MFEGLVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALKQGR 60
           M E L   LL   LG YV++    +L +  W+ ++ L+N++L  +  D L LP  +K G 
Sbjct: 1   MLESLAANLLNRLLGSYVENFDPNQLNVGIWSGDVKLKNLKLRKDCLDSLNLPIDVKSGI 60

Query: 61  VGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWNSDAVEKREFAGKKAKIAAAELA 120
           +G L + +PW  L   P+ II+ED Y+  S R ++  N + + KR F  K  K++  EL 
Sbjct: 61  LGDLVLTVPWSSLKNKPVKIIIEDCYLLCSPRSEDHENDEEMIKRAFRLKMRKVSEWELT 120

Query: 121 KLSR 125
             +R
Sbjct: 121 NQAR 124

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BLAST of Lsi06G006820 vs. Swiss-Prot
Match: VP13B_DICDI (Putative vacuolar protein sorting-associated protein 13B OS=Dictyostelium discoideum GN=vps13B PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.8e-14
Identity = 38/121 (31.40%), Postives = 72/121 (59.50%), Query Frame = 1


Query: 1   MFEGLVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALKQGR 60
           MFE LV  ++  Y+G Y+K++  E+LKI  ++  ++L+N+E+  EA    +LP  +++G 
Sbjct: 1   MFESLVADIIAKYIGEYIKNLSSEQLKINVFSGNVVLKNLEIKGEALQSFKLPLHVQKGI 60

Query: 61  VGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWNSDAVEKREFAGKKAKIAAAELA 120
           +G L++KIPW  L   P+I  ++ I + A  +   ++N +  +K +   K+ K+   EL 
Sbjct: 61  IGTLTLKIPWTNLKSSPVIFDIDCISLYAIPQTGFDYNEEEEKKNQLELKRKKLEKFELI 120

Query: 121 K 122
           +
Sbjct: 121 R 121

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BLAST of Lsi06G006820 vs. Swiss-Prot
Match: VP13D_DICDI (Putative vacuolar protein sorting-associated protein 13D OS=Dictyostelium discoideum GN=vps13D PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-13
Identity = 38/112 (33.93%), Postives = 69/112 (61.61%), Query Frame = 1


Query: 1   MFEGLVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALKQGR 60
           +FE +V +++  +LG +++++ K++LKI   N  ++L+N+E+  EAF    LP ++ +G 
Sbjct: 2   VFESVVAEVIDRFLGSFLQEVGKKQLKIGVLNGNVVLKNIEVKPEAFKAFDLPLSIDRGI 61

Query: 61  VGRLSIKIPWKKLGWDPIIIILEDIYISASQR------------DDEEWNSD 101
           VG+L+IK+PW  L  + +++ L+DIYI AS              DD  ++SD
Sbjct: 62  VGKLTIKVPWTSLKSESVVVHLQDIYILASSSSTNVSSNYSSSDDDSSYHSD 113

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BLAST of Lsi06G006820 vs. Swiss-Prot
Match: VP13A_DICDI (Putative vacuolar protein sorting-associated protein 13A OS=Dictyostelium discoideum GN=vps13A PE=2 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 7.0e-13
Identity = 44/124 (35.48%), Postives = 73/124 (58.87%), Query Frame = 1


Query: 1   MFEGLVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYL--QLPFALKQ 60
           +FEGLV  +L   LG YVK++ K++LKI  +   + L+N+EL  +A   L   LP  +K+
Sbjct: 2   VFEGLVSDVLSRVLGEYVKNLNKDQLKIGIFGGSVQLQNLELKEDALANLPINLPITVKK 61

Query: 61  GRVGRLSIKIPWKKLGWDPIIIILEDIY-ISASQRDDEEWNSDAVEKREFAGKKAKIAAA 120
           G +G+L +K+PWK L   P+II ++ IY ++  Q  + +++     K++   KK K+   
Sbjct: 62  GFLGKLDLKVPWKDLKSKPVIINIDCIYALAVPQTQNYKYDEKEEAKKQAELKKKKLENY 121

Query: 121 ELAK 122
           E  K
Sbjct: 122 EWIK 125

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BLAST of Lsi06G006820 vs. TrEMBL
Match: K4D8H8_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 1.6e-56
Identity = 109/129 (84.50%), Postives = 121/129 (93.80%), Query Frame = 1


Query: 1   MFEGLVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALKQGR 60
           MFEGLV QL++GYLG+Y+KDIQKEKLKIT WNEE+LLE+VELILEAFDYLQLPFALKQGR
Sbjct: 1   MFEGLVRQLILGYLGQYIKDIQKEKLKITLWNEEVLLEDVELILEAFDYLQLPFALKQGR 60

Query: 61  VGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWNSDAVEKREFAGKKAKIAAAELA 120
           VG+LSIKIPWKKLGWDP+II LED+ I ASQRDD+EW  D VE+REFAGKKAK+AAAELA
Sbjct: 61  VGKLSIKIPWKKLGWDPVIISLEDVLICASQRDDKEWRMDEVERREFAGKKAKLAAAELA 120

Query: 121 KLSRRVCGE 130
           KLSRRVCGE
Sbjct: 121 KLSRRVCGE 129

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BLAST of Lsi06G006820 vs. TrEMBL
Match: F6I5I5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0024g00090 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 1.8e-55
Identity = 107/126 (84.92%), Postives = 120/126 (95.24%), Query Frame = 1


Query: 1   MFEGLVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALKQGR 60
           MFEGLV QLL+GYLGRY+KDIQKE+LKIT WNEE+LLENVELILEAFDYLQLPFALKQGR
Sbjct: 1   MFEGLVSQLLLGYLGRYIKDIQKEQLKITLWNEEVLLENVELILEAFDYLQLPFALKQGR 60

Query: 61  VGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWNSDAVEKREFAGKKAKIAAAELA 120
           VGRLSIKIPWKKLGWDPIIIILED++I A QRDD+EW+ DA+E+RE AGKKAK+AAAELA
Sbjct: 61  VGRLSIKIPWKKLGWDPIIIILEDVFICACQRDDQEWSLDAIERRELAGKKAKLAAAELA 120

Query: 121 KLSRRV 127
           KLS+R+
Sbjct: 121 KLSKRM 126

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BLAST of Lsi06G006820 vs. TrEMBL
Match: A0A068VB32_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00019460001 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 1.8e-55
Identity = 105/129 (81.40%), Postives = 121/129 (93.80%), Query Frame = 1


Query: 1   MFEGLVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALKQGR 60
           MFEGLV QL++GYLGRY++DIQKE+LKIT WNEE+LLENVELILEAFDYLQLPFALK GR
Sbjct: 1   MFEGLVRQLILGYLGRYIRDIQKEQLKITLWNEEVLLENVELILEAFDYLQLPFALKHGR 60

Query: 61  VGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWNSDAVEKREFAGKKAKIAAAELA 120
           VG+LSIKIPWKKLGWDPIII+LED++ISA QR+D+EW+ D +EKREFAGKKAK+AAAEL 
Sbjct: 61  VGKLSIKIPWKKLGWDPIIIVLEDVFISACQREDKEWSVDEIEKREFAGKKAKLAAAELG 120

Query: 121 KLSRRVCGE 130
           KLSRRVC +
Sbjct: 121 KLSRRVCDD 129

[Close]

BLAST of Lsi06G006820 vs. TrEMBL
Match: W9QCF3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_010462 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 3.9e-55
Identity = 105/127 (82.68%), Postives = 119/127 (93.70%), Query Frame = 1


Query: 1   MFEGLVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALKQGR 60
           MFEG V QL++GYLGRYVKDIQ E+LKIT WNEE+LLENVEL LEAFDYLQLPFALKQGR
Sbjct: 1   MFEGFVRQLILGYLGRYVKDIQSEQLKITLWNEEVLLENVELTLEAFDYLQLPFALKQGR 60

Query: 61  VGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWNSDAVEKREFAGKKAKIAAAELA 120
           VG+LSI+IPWKKLGWDPI+IILED+++ ASQRDDEEW+SD VE+REFA KKAK+AAAELA
Sbjct: 61  VGKLSIRIPWKKLGWDPIVIILEDVFVCASQRDDEEWSSDVVERREFAAKKAKLAAAELA 120

Query: 121 KLSRRVC 128
           KLS+RVC
Sbjct: 121 KLSKRVC 127

[Close]

BLAST of Lsi06G006820 vs. TrEMBL
Match: A0A0V0J1W3_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 3.9e-55
Identity = 107/127 (84.25%), Postives = 119/127 (93.70%), Query Frame = 1


Query: 1   MFEGLVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALKQGR 60
           MFEGLV QL++GYLG+Y+KDIQKEKLKIT WNEE+LLE+VELILEAFDYLQLPFALKQGR
Sbjct: 1   MFEGLVRQLILGYLGQYIKDIQKEKLKITLWNEEVLLEDVELILEAFDYLQLPFALKQGR 60

Query: 61  VGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWNSDAVEKREFAGKKAKIAAAELA 120
           VG+LSIKIPWKKLGWDP+II LED+ I ASQRDD+EW  D VE+REFAGKKAK+AAAELA
Sbjct: 61  VGKLSIKIPWKKLGWDPVIISLEDVLICASQRDDKEWRMDEVERREFAGKKAKLAAAELA 120

Query: 121 KLSRRVC 128
           KLSRRVC
Sbjct: 121 KLSRRVC 127

[Close]

BLAST of Lsi06G006820 vs. TAIR10
Match: AT5G24740.1 (AT5G24740.1 Protein of unknown function (DUF1162))

HSP 1 Score: 188.3 bits (477), Expect = 3.2e-48
Identity = 94/129 (72.87%), Postives = 112/129 (86.82%), Query Frame = 1


Query: 1   MFEGLVG---QLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALK 60
           M EG V     LL+GYLGRY+KDIQK++LKI+ WN E+LLENVEL  EAF+YLQLP ALK
Sbjct: 1   MLEGYVQGFVNLLLGYLGRYIKDIQKDQLKISLWNGEVLLENVELNPEAFEYLQLPIALK 60

Query: 61  QGRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWNSDAVEKREFAGKKAKIAAA 120
           QGRVG+LSIKIPWKKL  DP+ I++ED++I ASQR+D+EW+SD VEKREFAGKKAK+A+A
Sbjct: 61  QGRVGKLSIKIPWKKLHRDPVTIMIEDVFICASQRNDQEWSSDVVEKREFAGKKAKLASA 120

Query: 121 ELAKLSRRV 127
           ELAKLSRRV
Sbjct: 121 ELAKLSRRV 129

[Close]

BLAST of Lsi06G006820 vs. TAIR10
Match: AT1G48090.1 (AT1G48090.1 calcium-dependent lipid-binding family protein)

HSP 1 Score: 84.7 bits (208), Expect = 5.0e-17
Identity = 43/127 (33.86%), Postives = 75/127 (59.06%), Query Frame = 1


Query: 4   GLVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALKQGRVGR 63
           G V  LL  YLG YV  +  E L+I+ W  +++L++++L  EA + L+LP A+K G VG 
Sbjct: 23  GEVLHLLRRYLGEYVHGLSTEALRISVWKGDVVLKDLKLKAEALNSLKLPVAVKSGFVGT 82

Query: 64  LSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWNSDAVEKREFAGKKAKIAAAELAKLS 123
           +++K+PWK LG +P+I++++ +++ A    D+    +   ++    K  +I  AE A L 
Sbjct: 83  ITLKVPWKSLGKEPVIVLIDRVFVLAYPAPDDRTLKEEDREKLLETKLQQIEEAETATLE 142

Query: 124 RRVCGEL 131
            R   +L
Sbjct: 143 ARAKSKL 149

[Close]

BLAST of Lsi06G006820 vs. TAIR10
Match: AT4G17140.3 (AT4G17140.3 pleckstrin homology (PH) domain-containing protein)

HSP 1 Score: 83.6 bits (205), Expect = 1.1e-16
Identity = 39/100 (39.00%), Postives = 63/100 (63.00%), Query Frame = 1


Query: 1   MFEGLVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALKQGR 60
           M E  V  LL  YLG YV+ + KE LKI+ W  ++ L+N++L  EA + L+LP  +K G 
Sbjct: 1   MLEDQVAYLLQRYLGNYVRGLNKEALKISVWQGDVELKNMQLKPEALNALKLPVRVKAGF 60

Query: 61  VGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWNSD 101
           +G + +K+PW +LG +P+++ L+ I++ A    D E  S+
Sbjct: 61  LGSVKLKVPWTRLGQEPVVVYLDRIFVLAEPATDVEGLSE 100

[Close]

BLAST of Lsi06G006820 vs. NCBI nr
Match: gi|778664064|ref|XP_011660209.1| (PREDICTED: uncharacterized protein LOC101204937 isoform X1 [Cucumis sativus])

HSP 1 Score: 246.9 bits (629), Expect = 2.1e-62
Identity = 124/127 (97.64%), Postives = 126/127 (99.21%), Query Frame = 1


Query: 1   MFEGLVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALKQGR 60
           MFEGLVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALK+GR
Sbjct: 1   MFEGLVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALKEGR 60

Query: 61  VGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWNSDAVEKREFAGKKAKIAAAELA 120
           VGRLSIKIPWKKLGWDPIIIILEDIYISASQRDD EW+SDAVEKREFAGKKAKIAAAELA
Sbjct: 61  VGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEWSSDAVEKREFAGKKAKIAAAELA 120

Query: 121 KLSRRVC 128
           KLSRRVC
Sbjct: 121 KLSRRVC 127

[Close]

BLAST of Lsi06G006820 vs. NCBI nr
Match: gi|659085896|ref|XP_008443663.1| (PREDICTED: putative vacuolar protein sorting-associated protein 13A [Cucumis melo])

HSP 1 Score: 246.9 bits (629), Expect = 2.1e-62
Identity = 124/127 (97.64%), Postives = 126/127 (99.21%), Query Frame = 1


Query: 1   MFEGLVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALKQGR 60
           MFEGLVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALK+GR
Sbjct: 1   MFEGLVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALKEGR 60

Query: 61  VGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWNSDAVEKREFAGKKAKIAAAELA 120
           VGRLSIKIPWKKLGWDPIIIILEDIYISASQRDD EW+SDAVEKREFAGKKAKIAAAELA
Sbjct: 61  VGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEWSSDAVEKREFAGKKAKIAAAELA 120

Query: 121 KLSRRVC 128
           KLSRRVC
Sbjct: 121 KLSRRVC 127

[Close]

BLAST of Lsi06G006820 vs. NCBI nr
Match: gi|778664067|ref|XP_011660210.1| (PREDICTED: uncharacterized protein LOC101204937 isoform X2 [Cucumis sativus])

HSP 1 Score: 246.9 bits (629), Expect = 2.1e-62
Identity = 124/127 (97.64%), Postives = 126/127 (99.21%), Query Frame = 1


Query: 1   MFEGLVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALKQGR 60
           MFEGLVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALK+GR
Sbjct: 1   MFEGLVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALKEGR 60

Query: 61  VGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWNSDAVEKREFAGKKAKIAAAELA 120
           VGRLSIKIPWKKLGWDPIIIILEDIYISASQRDD EW+SDAVEKREFAGKKAKIAAAELA
Sbjct: 61  VGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEWSSDAVEKREFAGKKAKIAAAELA 120

Query: 121 KLSRRVC 128
           KLSRRVC
Sbjct: 121 KLSRRVC 127

[Close]

BLAST of Lsi06G006820 vs. NCBI nr
Match: gi|296090219|emb|CBI40038.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 227.6 bits (579), Expect = 1.3e-56
Identity = 109/127 (85.83%), Postives = 121/127 (95.28%), Query Frame = 1


Query: 1   MFEGLVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALKQGR 60
           MFEGLV QLL+GYLGRY+KDIQKE+LKIT WNEE+LLENVELILEAFDYLQLPFALKQGR
Sbjct: 1   MFEGLVSQLLLGYLGRYIKDIQKEQLKITLWNEEVLLENVELILEAFDYLQLPFALKQGR 60

Query: 61  VGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWNSDAVEKREFAGKKAKIAAAELA 120
           VGRLSIKIPWKKLGWDPIIIILED++I A QRDD+EW+ DA+E+RE AGKKAK+AAAELA
Sbjct: 61  VGRLSIKIPWKKLGWDPIIIILEDVFICACQRDDQEWSLDAIERRELAGKKAKLAAAELA 120

Query: 121 KLSRRVC 128
           KLS+RVC
Sbjct: 121 KLSKRVC 127

[Close]

BLAST of Lsi06G006820 vs. NCBI nr
Match: gi|731419936|ref|XP_010661193.1| (PREDICTED: putative vacuolar protein sorting-associated protein 13A isoform X3 [Vitis vinifera])

HSP 1 Score: 227.6 bits (579), Expect = 1.3e-56
Identity = 109/127 (85.83%), Postives = 121/127 (95.28%), Query Frame = 1


Query: 1   MFEGLVGQLLVGYLGRYVKDIQKEKLKITFWNEEILLENVELILEAFDYLQLPFALKQGR 60
           MFEGLV QLL+GYLGRY+KDIQKE+LKIT WNEE+LLENVELILEAFDYLQLPFALKQGR
Sbjct: 1   MFEGLVSQLLLGYLGRYIKDIQKEQLKITLWNEEVLLENVELILEAFDYLQLPFALKQGR 60

Query: 61  VGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDEEWNSDAVEKREFAGKKAKIAAAELA 120
           VGRLSIKIPWKKLGWDPIIIILED++I A QRDD+EW+ DA+E+RE AGKKAK+AAAELA
Sbjct: 61  VGRLSIKIPWKKLGWDPIIIILEDVFICACQRDDQEWSLDAIERRELAGKKAKLAAAELA 120

Query: 121 KLSRRVC 128
           KLS+RVC
Sbjct: 121 KLSKRVC 127

The following BLAST results are available for this feature:

BLAST of Lsi06G006820 vs. Swiss-Prot


Match Name	E-value	Identity	Description
VP13F_DICDI	3.8e-19	40.00	Putative vacuolar protein sorting-associated protein 13F OS=Dictyostelium discoi...	[more]
VPS13_YEAST	1.3e-14	33.87	Vacuolar protein sorting-associated protein 13 OS=Saccharomyces cerevisiae (stra...	[more]
VP13B_DICDI	2.8e-14	31.40	Putative vacuolar protein sorting-associated protein 13B OS=Dictyostelium discoi...	[more]
VP13D_DICDI	1.1e-13	33.93	Putative vacuolar protein sorting-associated protein 13D OS=Dictyostelium discoi...	[more]
VP13A_DICDI	7.0e-13	35.48	Putative vacuolar protein sorting-associated protein 13A OS=Dictyostelium discoi...	[more]

BLAST of Lsi06G006820 vs. TrEMBL


Match Name	E-value	Identity	Description
K4D8H8_SOLLC	1.6e-56	84.50	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
F6I5I5_VITVI	1.8e-55	84.92	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0024g00090 PE=4 SV=...	[more]
A0A068VB32_COFCA	1.8e-55	81.40	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00019460001 PE=4 SV=1	[more]
W9QCF3_9ROSA	3.9e-55	82.68	Uncharacterized protein OS=Morus notabilis GN=L484_010462 PE=4 SV=1	[more]
A0A0V0J1W3_SOLCH	3.9e-55	84.25	Putative ovule protein OS=Solanum chacoense PE=4 SV=1	[more]

BLAST of Lsi06G006820 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G24740.1	3.2e-48	72.87	Protein of unknown function (DUF1162)	[more]
AT1G48090.1	5.0e-17	33.86	calcium-dependent lipid-binding family protein	[more]
AT4G17140.3	1.1e-16	39.00	pleckstrin homology (PH) domain-containing protein	[more]

BLAST of Lsi06G006820 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778664064\|ref\|XP_011660209.1\|	2.1e-62	97.64	PREDICTED: uncharacterized protein LOC101204937 isoform X1 [Cucumis sativus]	[more]
gi\|659085896\|ref\|XP_008443663.1\|	2.1e-62	97.64	PREDICTED: putative vacuolar protein sorting-associated protein 13A [Cucumis mel...	[more]
gi\|778664067\|ref\|XP_011660210.1\|	2.1e-62	97.64	PREDICTED: uncharacterized protein LOC101204937 isoform X2 [Cucumis sativus]	[more]
gi\|296090219\|emb\|CBI40038.3\|	1.3e-56	85.83	unnamed protein product [Vitis vinifera]	[more]
gi\|731419936\|ref\|XP_010661193.1\|	1.3e-56	85.83	PREDICTED: putative vacuolar protein sorting-associated protein 13A isoform X3 [...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR026854	VPS13_N
IPR026847	VPS13

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G006820.1	Lsi06G006820.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026847	Vacuolar protein sorting-associated protein 13	PANTHER	PTHR16166	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13	coord: 2..126 score: 5.5
IPR026854	Vacuolar protein sorting-associated protein 13, N-terminal domain	PFAM	PF12624	Chorein_N	coord: 2..115 score: 7.8
None	No IPR available	PANTHER	PTHR16166:SF100	SUBFAMILY NOT NAMED	coord: 2..126 score: 5.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi06G006820	Csa1G653320	Cucumber (Chinese Long) v2	culsiB058
Lsi06G006820	CSPI01G32120	Wild cucumber (PI 183967)	cpilsiB059
Lsi06G006820	Cla009522	Watermelon (97103) v1	lsiwmB391
Lsi06G006820	MELO3C010033	Melon (DHL92) v3.5.1	lsimeB398
Lsi06G006820	ClCG03G010430	Watermelon (Charleston Gray)	lsiwcgB361
Lsi06G006820	Cp4.1LG18g02450	Cucurbita pepo (Zucchini)	cpelsiB299
Lsi06G006820	Carg17804	Silver-seed gourd	carlsiB886
Lsi06G006820	CsaV3_1G044340	Cucumber (Chinese Long) v3	cuclsiB068

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G006820	Wax gourd	lsiwgoB511
Lsi06G006820	Wax gourd	lsiwgoB521
Lsi06G006820	Cucumber (Gy14) v1	cgylsiB573
Lsi06G006820	Cucurbita maxima (Rimu)	cmalsiB073
Lsi06G006820	Cucurbita maxima (Rimu)	cmalsiB128
Lsi06G006820	Cucurbita moschata (Rifu)	cmolsiB059
Lsi06G006820	Cucurbita moschata (Rifu)	cmolsiB118
Lsi06G006820	Cucurbita pepo (Zucchini)	cpelsiB017
Lsi06G006820	Cucumber (Gy14) v2	cgyblsiB055
Lsi06G006820	Melon (DHL92) v3.6.1	lsimedB420
Lsi06G006820	Silver-seed gourd	carlsiB485
Lsi06G006820	Watermelon (97103) v2	lsiwmbB362