Cla009522 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla009522
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Vacuolar protein sorting-associated protein vps13 (Exp=-1 wgp=0 cg=1 related) (AHRD V1 ***- A2Q3U6_MEDTR)
Location	Chr3 : 15260295 .. 15261094 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGGTCGTGTAGGGAGGTTAAGCATCAAGATTCCATGGAAAAAGCTTGGATGGCATCCGATCATTATTATTTTGGAGGATGTATATGTTTCTGCATCTCAACGGGATGATGAAGAGGTAATTAACCAGAGTTGCCTTTAATCCCACCATTGATCCAAAGGGATGAGGCCCATACTTGCTAACGATAACCTTATGCCATCATGTTTCGGCTTCATGGTTATTTAGGGTTCCTGCTTGCACAATATGTAGAATTCTTAAAAACAAATCTGTTTAATGGCTGTTGTGTATTTCTTTGGGTGATTTAGACAAAAAAAAAAGAAATTTCAATAATAATCAGAACCAACTTTGAGTTCTGCTTGTGTTGTTTCTTTACTTTTACATGCCGAGTCTAAATTAACCTTTTTAATTTTTAATTTTTTCTACTATATTGGTGAGTTGGAGTCTTTTTTTGAAACACGTTTGGCCCTTTGGATATTTCATATCTCAATAACATAATTGTTTCTTGGGAGGTTTCTTTTTGAGAGGGATCAATAACTTATAGTTACTTACAAATAAACTAGTGAATGAACGTGGGGGCCTTCAAAAGGGAGAATGGATACTTTAAAATTAATATCCCGTTGCGAAAATTCTGGACATCTTTTTCTTTGTTATAGTGGAGCTCAGATGCTGTTGAAAAAAGAGAATTTGCTGGGAAGAAGGCCAAAATTGCTGCCGCAGAGCTGGCGAAATTATCAAGGCGTGTATGTGGTGAGCTACTTGACTTCCATTCATCGTATTGGCAACATCTTTGCTTATGA

mRNA sequence

ATGGTAGGTCGTGTAGGGAGGTTAAGCATCAAGATTCCATGGAAAAAGCTTGGATGGCATCCGATCATTATTATTTTGGAGGATGTATATGTTTCTGCATCTCAACGGGATGATGAAGAGTGGAGCTCAGATGCTGTTGAAAAAAGAGAATTTGCTGGGAAGAAGGCCAAAATTGCTGCCGCAGAGCTGGCGAAATTATCAAGGCGTGTATGTGGTGAGCTACTTGACTTCCATTCATCGTATTGGCAACATCTTTGCTTATGA

Coding sequence (CDS)

ATGGTAGGTCGTGTAGGGAGGTTAAGCATCAAGATTCCATGGAAAAAGCTTGGATGGCATCCGATCATTATTATTTTGGAGGATGTATATGTTTCTGCATCTCAACGGGATGATGAAGAGTGGAGCTCAGATGCTGTTGAAAAAAGAGAATTTGCTGGGAAGAAGGCCAAAATTGCTGCCGCAGAGCTGGCGAAATTATCAAGGCGTGTATGTGGTGAGCTACTTGACTTCCATTCATCGTATTGGCAACATCTTTGCTTATGA

Protein sequence

MVGRVGRLSIKIPWKKLGWHPIIIILEDVYVSASQRDDEEWSSDAVEKREFAGKKAKIAAAELAKLSRRVCGELLDFHSSYWQHLCL

Homology

[Close]

BLAST of Cla009522 vs. TrEMBL
Match: A0A0A0M352_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G653320 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 2.9e-29
Identity = 66/71 (92.96%), Postives = 68/71 (95.77%), Query Frame = 1


Query: 1  MVGRVGRLSIKIPWKKLGWHPIIIILEDVYVSASQRDDEEWSSDAVEKREFAGKKAKIAA 60
          M GRVGRLSIKIPWKKLGW PIIIILED+Y+SASQRDD EWSSDAVEKREFAGKKAKIAA
Sbjct: 1  MFGRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEWSSDAVEKREFAGKKAKIAA 60

Query: 61 AELAKLSRRVC 72
          AELAKLSRRVC
Sbjct: 61 AELAKLSRRVC 71

[Close]

BLAST of Cla009522 vs. TrEMBL
Match: W9QCF3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_010462 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 6.8e-26
Identity = 58/69 (84.06%), Postives = 65/69 (94.20%), Query Frame = 1


Query: 3   GRVGRLSIKIPWKKLGWHPIIIILEDVYVSASQRDDEEWSSDAVEKREFAGKKAKIAAAE 62
           GRVG+LSI+IPWKKLGW PI+IILEDV+V ASQRDDEEWSSD VE+REFA KKAK+AAAE
Sbjct: 59  GRVGKLSIRIPWKKLGWDPIVIILEDVFVCASQRDDEEWSSDVVERREFAAKKAKLAAAE 118

Query: 63  LAKLSRRVC 72
           LAKLS+RVC
Sbjct: 119 LAKLSKRVC 127

[Close]

BLAST of Cla009522 vs. TrEMBL
Match: K4D8H8_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.5e-25
Identity = 58/71 (81.69%), Postives = 64/71 (90.14%), Query Frame = 1


Query: 3   GRVGRLSIKIPWKKLGWHPIIIILEDVYVSASQRDDEEWSSDAVEKREFAGKKAKIAAAE 62
           GRVG+LSIKIPWKKLGW P+II LEDV + ASQRDD+EW  D VE+REFAGKKAK+AAAE
Sbjct: 59  GRVGKLSIKIPWKKLGWDPVIISLEDVLICASQRDDKEWRMDEVERREFAGKKAKLAAAE 118

Query: 63  LAKLSRRVCGE 74
           LAKLSRRVCGE
Sbjct: 119 LAKLSRRVCGE 129

[Close]

BLAST of Cla009522 vs. TrEMBL
Match: A0A067L6P4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02744 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.0e-25
Identity = 60/76 (78.95%), Postives = 68/76 (89.47%), Query Frame = 1


Query: 2   VGRVGRLSIKIPWKKLGW-HPIIIILEDVYVSASQRDDEEWSSDAVEKREFAGKKAKIAA 61
           +GRVGRLSI+I WK LGW HPIII+LEDV++ ASQRDD EWS +AVEKREFAGKKAK+AA
Sbjct: 198 LGRVGRLSIRISWKNLGWDHPIIIVLEDVFICASQRDDHEWSMEAVEKREFAGKKAKLAA 257

Query: 62  AELAKLSRRVCGELLD 77
           AELAKLSRRV G+L D
Sbjct: 258 AELAKLSRRVSGKLFD 273

[Close]

BLAST of Cla009522 vs. TrEMBL
Match: A0A068VB32_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00019460001 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.6e-25
Identity = 56/71 (78.87%), Postives = 65/71 (91.55%), Query Frame = 1


Query: 3   GRVGRLSIKIPWKKLGWHPIIIILEDVYVSASQRDDEEWSSDAVEKREFAGKKAKIAAAE 62
           GRVG+LSIKIPWKKLGW PIII+LEDV++SA QR+D+EWS D +EKREFAGKKAK+AAAE
Sbjct: 59  GRVGKLSIKIPWKKLGWDPIIIVLEDVFISACQREDKEWSVDEIEKREFAGKKAKLAAAE 118

Query: 63  LAKLSRRVCGE 74
           L KLSRRVC +
Sbjct: 119 LGKLSRRVCDD 129

[Close]

BLAST of Cla009522 vs. NCBI nr
Match: gi|700211555|gb|KGN66651.1| (hypothetical protein Csa_1G653320 [Cucumis sativus])

HSP 1 Score: 135.6 bits (340), Expect = 4.2e-29
Identity = 66/71 (92.96%), Postives = 68/71 (95.77%), Query Frame = 1


Query: 1  MVGRVGRLSIKIPWKKLGWHPIIIILEDVYVSASQRDDEEWSSDAVEKREFAGKKAKIAA 60
          M GRVGRLSIKIPWKKLGW PIIIILED+Y+SASQRDD EWSSDAVEKREFAGKKAKIAA
Sbjct: 1  MFGRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEWSSDAVEKREFAGKKAKIAA 60

Query: 61 AELAKLSRRVC 72
          AELAKLSRRVC
Sbjct: 61 AELAKLSRRVC 71

[Close]

BLAST of Cla009522 vs. NCBI nr
Match: gi|778664064|ref|XP_011660209.1| (PREDICTED: uncharacterized protein LOC101204937 isoform X1 [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 1.2e-28
Identity = 65/69 (94.20%), Postives = 67/69 (97.10%), Query Frame = 1


Query: 3   GRVGRLSIKIPWKKLGWHPIIIILEDVYVSASQRDDEEWSSDAVEKREFAGKKAKIAAAE 62
           GRVGRLSIKIPWKKLGW PIIIILED+Y+SASQRDD EWSSDAVEKREFAGKKAKIAAAE
Sbjct: 59  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEWSSDAVEKREFAGKKAKIAAAE 118

Query: 63  LAKLSRRVC 72
           LAKLSRRVC
Sbjct: 119 LAKLSRRVC 127

[Close]

BLAST of Cla009522 vs. NCBI nr
Match: gi|659085896|ref|XP_008443663.1| (PREDICTED: putative vacuolar protein sorting-associated protein 13A [Cucumis melo])

HSP 1 Score: 134.0 bits (336), Expect = 1.2e-28
Identity = 65/69 (94.20%), Postives = 67/69 (97.10%), Query Frame = 1


Query: 3   GRVGRLSIKIPWKKLGWHPIIIILEDVYVSASQRDDEEWSSDAVEKREFAGKKAKIAAAE 62
           GRVGRLSIKIPWKKLGW PIIIILED+Y+SASQRDD EWSSDAVEKREFAGKKAKIAAAE
Sbjct: 59  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEWSSDAVEKREFAGKKAKIAAAE 118

Query: 63  LAKLSRRVC 72
           LAKLSRRVC
Sbjct: 119 LAKLSRRVC 127

[Close]

BLAST of Cla009522 vs. NCBI nr
Match: gi|778664067|ref|XP_011660210.1| (PREDICTED: uncharacterized protein LOC101204937 isoform X2 [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 1.2e-28
Identity = 65/69 (94.20%), Postives = 67/69 (97.10%), Query Frame = 1


Query: 3   GRVGRLSIKIPWKKLGWHPIIIILEDVYVSASQRDDEEWSSDAVEKREFAGKKAKIAAAE 62
           GRVGRLSIKIPWKKLGW PIIIILED+Y+SASQRDD EWSSDAVEKREFAGKKAKIAAAE
Sbjct: 59  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEWSSDAVEKREFAGKKAKIAAAE 118

Query: 63  LAKLSRRVC 72
           LAKLSRRVC
Sbjct: 119 LAKLSRRVC 127

[Close]

BLAST of Cla009522 vs. NCBI nr
Match: gi|1009174385|ref|XP_015868320.1| (PREDICTED: uncharacterized protein LOC107405745 isoform X2 [Ziziphus jujuba])

HSP 1 Score: 124.8 bits (312), Expect = 7.4e-26
Identity = 59/69 (85.51%), Postives = 65/69 (94.20%), Query Frame = 1


Query: 3   GRVGRLSIKIPWKKLGWHPIIIILEDVYVSASQRDDEEWSSDAVEKREFAGKKAKIAAAE 62
           GRVG+LSIKIPWKKLGW PI+I+LEDV+V ASQRDDEEWS DAVEKREFA KKAK+AAAE
Sbjct: 59  GRVGKLSIKIPWKKLGWDPIVIMLEDVFVCASQRDDEEWSLDAVEKREFAAKKAKLAAAE 118

Query: 63  LAKLSRRVC 72
           LAKLS+RVC
Sbjct: 119 LAKLSKRVC 127

The following BLAST results are available for this feature:

BLAST of Cla009522 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M352_CUCSA	2.9e-29	92.96	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G653320 PE=4 SV=1	[more]
W9QCF3_9ROSA	6.8e-26	84.06	Uncharacterized protein OS=Morus notabilis GN=L484_010462 PE=4 SV=1	[more]
K4D8H8_SOLLC	1.5e-25	81.69	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
A0A067L6P4_JATCU	2.0e-25	78.95	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02744 PE=4 SV=1	[more]
A0A068VB32_COFCA	2.6e-25	78.87	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00019460001 PE=4 SV=1	[more]

BLAST of Cla009522 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700211555\|gb\|KGN66651.1\|	4.2e-29	92.96	hypothetical protein Csa_1G653320 [Cucumis sativus]	[more]
gi\|778664064\|ref\|XP_011660209.1\|	1.2e-28	94.20	PREDICTED: uncharacterized protein LOC101204937 isoform X1 [Cucumis sativus]	[more]
gi\|659085896\|ref\|XP_008443663.1\|	1.2e-28	94.20	PREDICTED: putative vacuolar protein sorting-associated protein 13A [Cucumis mel...	[more]
gi\|778664067\|ref\|XP_011660210.1\|	1.2e-28	94.20	PREDICTED: uncharacterized protein LOC101204937 isoform X2 [Cucumis sativus]	[more]
gi\|1009174385\|ref\|XP_015868320.1\|	7.4e-26	85.51	PREDICTED: uncharacterized protein LOC107405745 isoform X2 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR026847	VPS13
IPR026854	VPS13_N

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU78957	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla009522	Cla009522.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU78957	WMU78957	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026847	Vacuolar protein sorting-associated protein 13	PANTHER	PTHR16166	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13	coord: 3..70 score: 9.9
IPR026854	Vacuolar protein sorting-associated protein 13, N-terminal domain	PFAM	PF12624	Chorein_N	coord: 3..59 score: 3.6
None	No IPR available	PANTHER	PTHR16166:SF100	SUBFAMILY NOT NAMED	coord: 3..70 score: 9.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla009522	Csa1G653320	Cucumber (Chinese Long) v2	cuwmB011
Cla009522	ClCG03G010430	Watermelon (Charleston Gray)	wcgwmB225
Cla009522	CSPI01G32120	Wild cucumber (PI 183967)	cpiwmB013
Cla009522	CmoCh10G008710	Cucurbita moschata (Rifu)	cmowmB043
Cla009522	Lsi06G006820	Bottle gourd (USVL1VR-Ls)	lsiwmB391
Cla009522	Cp4.1LG18g02450	Cucurbita pepo (Zucchini)	cpewmB350
Cla009522	Carg17805	Silver-seed gourd	carwmB0970
Cla009522	CsaV3_1G044340	Cucumber (Chinese Long) v3	cucwmB016

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla009522	Wax gourd	wgowmB661
Cla009522	Cucumber (Gy14) v1	cgywmB638
Cla009522	Cucurbita maxima (Rimu)	cmawmB051
Cla009522	Cucurbita maxima (Rimu)	cmawmB093
Cla009522	Cucurbita moschata (Rifu)	cmowmB084
Cla009522	Melon (DHL92) v3.5.1	mewmB263
Cla009522	Cucurbita pepo (Zucchini)	cpewmB006
Cla009522	Cucumber (Gy14) v2	cgybwmB013
Cla009522	Melon (DHL92) v3.6.1	medwmB254
Cla009522	Silver-seed gourd	carwmB0531
Cla009522	Watermelon (97103) v2	wmwmbB126