Lsi06G006590 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTTCTCCCGCAGCTTCAGTTCACCTTCTCCTCCGTCATTTCTGAGCCTTTTTGCAATCTCTCTCTATCTCTCTTTCTCTCTCTTCCATGGCTTTGCATCTCTCTCTCTCTCCGCCTTCGATCAGATCGTCGCCGTCGTTTCCCTGCAGCGGAAGGCAGCTGATCGCCGCACTTTCTGAGTCGAAAAGTGGCTGCTTCAATTCGAAGAGCTTGAGTGTCACTAGTAGCAGGAACATTGGTGTTTCCGGTGGAAATCGGTCCTTCAAGGTCAATTCAAGCTTGGAGACTGCCGGCGCTACTGTTGGCCAAGTCACTGAGGTCAACAAGGACACTTTCTGGCCCATTGTCAATGCCGCCGGTGATAAAACCGTTGTGCTCGATATGTACACCCAATGGTTTGTGTTTCTCTGTCTCCATATGTCTTTGCTTCTTAATTTTGTGGTTTCTTTAGGTTACTACATGAGATTATTCTGAAATATGGCTGCGGATATGAATGTTCTTATATTTGTAGGTTATTTCTGGTTTACCGATTTAATTACGGAAACCTAGTCGAGCTAGGCGATGCTTAGAGTAGAGTATAGATCTCGTGGTTCGAGTAATTGAAAAGAAACTTCGGTTTTAATTAGGCGTCTGTTTGTCAAATGATTTTGAAATTTATAAATGTAAGCCCTGCAAGTTGAGGACACTTTGTATTTTTTTAATATTGAGTTTGACTTTGATTAAAAAATTATCAGAGGAAGACAGTTGTTTTCTTTTTCTTCTTTTAAACAACATTTAGGACTTGAAAACTGGGTTTAGTTTTGATGTATAGCATTTTGAATTCACATCTCGGCTGGACTAACTCAAGCTTAATAGCTGTAATTTCTGAGACGATGTCAGGAGAAATTGTTGGAGGATGCCAGAACTATGTGGCTCTCACATTGAATAATTTTTCTAATATTGTAGTTTTCGAAACAATATACAGTTGAAACATCTTCTAAATAAGTTCAAGGCAATTTGATAATGGGTATTCTAGCCACTGGGTAGTCAAATTATTTTTTTACAAAGTATTTGGAATCAAATCCATTAGATGTAGAGCTCGTTGAATAATTTTTCCAACAACTGAGGGTGGGGGATTAAAACCTATGGTCTCTTCATCCATGGCATATGCTGTTGAGTTATGCTTAAGGTTGACAAGTCTAAGTCATATCAAACAACATTTGTAGTCTATACAAGCTACGTGATTGCTTGTTTCGTTTCCAATAATTTTGACATAATTTTAATGTAATGTTCTCTGTTTTAGGGTATTTTGCTCCATCGCGCTGTAGCCAATTGGTGATGGTGCCTTTTTAATAGTGATTAAGCCTGAAGTATTTTATTAATGTGCAGAGTTTTAGGAAAGAAAATTTGAAAGAATGAGAAACTGGTTAGCTAGAAAAACAACACAATAGCTTGTTTATACTAAATATAACATATCTTACCAAGAAAAAAAAAAAAACTAGATATAACATAAGTAAAAGAAGAAAAATATATTGATTTAAAACAAGCTTCATACCACGACTTGGATAAACTTTTGAAGCGTATAATGTAACATAGCGTAACTGAAATGTGCTTTGCCTCTATGTTATGACCTTTCGGATCTTTCTTTTCTTTCCTTTAGCTTTAATTCCATAATACATAAGTTTATTAACTAAAAACAAAGACACCCTTTGCCTTTGACAGCCTTAAGTTTCTGGCAGAGTTTTTACTTTTGCCTTATTTTTTCTTGTAATAACCCGATTCTCATGACTGTGGTGATTAATTTTTGTTAGAAAGAAACTTTTCCTTGTTTGCTGTGCAATTTCAGACTCCTTGCGACATTAATCATTTGTGAAAATTTTAGATTCATTATTTATTGTCTCTGTTTTTGGACTCCCAAGCTTAATATCTTAATTATCTTTCTTTCTTTATTCATCCTTACATGGTACACTAAAGGTGTGGACCCTGCAAAGTGATGGCCCCCAAATTTCAAGAATTGTCTGAGAAATATCTTGACGTTGTCTTTCTAAAGCTCGACTGCAACCAAGACAATAAGGTTCGTTTCATGATCCCTACTTTCTTGCTGGAGCTTAGGAATGTATTTGCATAGTTCATATAAGAACACTTGAATTCTCTTTATTTGGCAGCCATTGGCAAAGGAACTTGGGATAAAAGTTGTGCCAACTTTCAAAATTCTAAAGGATAACAAGGTTGTTAAAGAAGTAACTGGGGCAAAGTTTGATGATTTGGTTCATGCCATTGATACTGTAAGATCCAGCTGAAAACTCTCCTGTCTTCTCTTCTTTGTAAATTCAAATAATATGATGCAAGGAAGAGTATCCAGGACAGTTATTTATTTTACTCTATTTATTTAATAATTTTGTGTACTGTTAAGTTTTAAGGAAGAAGCTGTTCAACAATATTCTTCTTCTTGCTAAGATAGTGGGAAATGATTCTGTATATAGTTGTTTGGGACATAGACATTTGAATATGGACAATGAACAGTTCCTACATATTCCAAAAATTATTTTGCTATAAACATTTGATGCATGCAGAGAGGGTTTGAATGTTTTTATAATTGGGTTTGGGTTTGGTCATGGTCATGGTTTTTGGTTGGATTTTGGGTGATCTTTTGATTGGGTTTTAGTTGGATTTTAGTGTGTTTGGGATGGCTTGTGAGAAGTCCTAAGTAAATGTGTAGTGTATGGTATTATTTAAAAGGTTTAAAGTCCACTTTGATCTGGTTTGTTACCTTTACAACTGTTTTGATATTTGAAGTTTAAAATTCGTACCTAACAAATCCATGATAATTTAAAAAGTGAGTTCCATTTTACTACGTTTGTTGTTGTTTACCTATGTTACGTTTGTTGTTGTTTACCTATGTTTCGTACTTGTACGGACATGTGAGCTCATTTTCAAAGGATCTTTTATAGAAATATTGTAATTTAAAAAACTATTTAGAAAAATATTGTTGTTTCTAAAATATTTATAAAAATATAGTTGTTTTTCTTGATAAACGAGATTTGTTTTAAAAAAATTAAAAAAAAAAAAGAAATCTGCCTGCCACACATGTCAACTATCAAGTCTGTGGCGGGCATAATTTTGTTGAAGATAGATCGTAAGTTGAACTTGCGACCTACCCCATCT CTTCTCCCGCAGCTTCAGTTCACCTTCTCCTCCGTCATTTCTGAGCCTTTTTGCAATCTCTCTCTATCTCTCTTTCTCTCTCTTCCATGGCTTTGCATCTCTCTCTCTCTCCGCCTTCGATCAGATCGTCGCCGTCGTTTCCCTGCAGCGGAAGGCAGCTGATCGCCGCACTTTCTGAGTCGAAAAGTGGCTGCTTCAATTCGAAGAGCTTGAGTGTCACTAGTAGCAGGAACATTGGTGTTTCCGGTGGAAATCGGTCCTTCAAGGTCAATTCAAGCTTGGAGACTGCCGGCGCTACTGTTGGCCAAGTCACTGAGGTCAACAAGGACACTTTCTGGCCCATTGTCAATGCCGCCGGTGATAAAACCGTTGTGCTCGATATGTACACCCAATGGTGTGGACCCTGCAAAGTGATGGCCCCCAAATTTCAAGAATTGTCTGAGAAATATCTTGACGTTGTCTTTCTAAAGCTCGACTGCAACCAAGACAATAAGCCATTGGCAAAGGAACTTGGGATAAAAGTTGTGCCAACTTTCAAAATTCTAAAGGATAACAAGGTTGTTAAAGAAGTAACTGGGGCAAAGTTTGATGATTTGGTTCATGCCATTGATACTGTAAGATCCAGCTGAAAACTCTCCTGTCTTCTCTTCTTTGTAAATTCAAATAATATGATGCAAGGAAGAGTATCCAGGACAGTTATTTATTTTACTCTATTTATTTAATAATTTTGTGTACTGTTAAGTTTTAAGGAAGAAGCTGTTCAACAATATTCTTCTTCTTGCTAAGATAGTGGGAAATGATTCTGTATATAGTTGTTTGGGACATAGACATTTGAATATGGACAATGAACAGTTCCTACATATTCCAAAAATTATTTTGCTATAAACATTTGATGCATGCAGAGAGGGTTTGAATGTTTTTATAATTGGGTTTGGGTTTGGTCATGGTCATGGTTTTTGGTTGGATTTTGGGTGATCTTTTGATTGGGTTTTAGTTGGATTTTAGTGTGTTTGGGATGGCTTGTGAGAAGTCCTAAGTAAATGTGTAGTGTATGGTATTATTTAAAAGGTTTAAAGTCCACTTTGATCTGGTTTGTTACCTTTACAACTGTTTTGATATTTGAAGTTTAAAATTCGTACCTAACAAATCCATGATAATTTAAAAAGTGAGTTCCATTTTACTACGTTTGTTGTTGTTTACCTATGTTACGTTTGTTGTTGTTTACCTATGTTTCGTACTTGTACGGACATGTGAGCTCATTTTCAAAGGATCTTTTATAGAAATATTGTAATTTAAAAAACTATTTAGAAAAATATTGTTGTTTCTAAAATATTTATAAAAATATAGTTGTTTTTCTTGATAAACGAGATTTGTTTTAAAAAAATTAAAAAAAAAAAAGAAATCTGCCTGCCACACATGTCAACTATCAAGTCTGTGGCGGGCATAATTTTGTTGAAGATAGATCGTAAGTTGAACTTGCGACCTACCCCATCT ATGGCTTTGCATCTCTCTCTCTCTCCGCCTTCGATCAGATCGTCGCCGTCGTTTCCCTGCAGCGGAAGGCAGCTGATCGCCGCACTTTCTGAGTCGAAAAGTGGCTGCTTCAATTCGAAGAGCTTGAGTGTCACTAGTAGCAGGAACATTGGTGTTTCCGGTGGAAATCGGTCCTTCAAGGTCAATTCAAGCTTGGAGACTGCCGGCGCTACTGTTGGCCAAGTCACTGAGGTCAACAAGGACACTTTCTGGCCCATTGTCAATGCCGCCGGTGATAAAACCGTTGTGCTCGATATGTACACCCAATGGTGTGGACCCTGCAAAGTGATGGCCCCCAAATTTCAAGAATTGTCTGAGAAATATCTTGACGTTGTCTTTCTAAAGCTCGACTGCAACCAAGACAATAAGCCATTGGCAAAGGAACTTGGGATAAAAGTTGTGCCAACTTTCAAAATTCTAAAGGATAACAAGGTTGTTAAAGAAGTAACTGGGGCAAAGTTTGATGATTTGGTTCATGCCATTGATACTGTAAGATCCAGCTGA MALHLSLSPPSIRSSPSFPCSGRQLIAALSESKSGCFNSKSLSVTSSRNIGVSGGNRSFKVNSSLETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEKYLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDNKVVKEVTGAKFDDLVHAIDTVRSS
BLAST of Lsi06G006590 vs. Swiss-Prot
Match: TRXF_PEA (Thioredoxin F-type, chloroplastic OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 216.9 bits (551), Expect = 1.9e-55 Identity = 124/186 (66.67%), Postives = 142/186 (76.34%), Query Frame = 1
BLAST of Lsi06G006590 vs. Swiss-Prot
Match: TRXF1_ARATH (Thioredoxin F1, chloroplastic OS=Arabidopsis thaliana GN=At3g02730 PE=1 SV=2) HSP 1 Score: 202.6 bits (514), Expect = 3.6e-51 Identity = 97/120 (80.83%), Postives = 108/120 (90.00%), Query Frame = 1
BLAST of Lsi06G006590 vs. Swiss-Prot
Match: TRXF2_ARATH (Thioredoxin F2, chloroplastic OS=Arabidopsis thaliana GN=At5g16400 PE=2 SV=1) HSP 1 Score: 202.2 bits (513), Expect = 4.8e-51 Identity = 116/186 (62.37%), Postives = 129/186 (69.35%), Query Frame = 1
BLAST of Lsi06G006590 vs. Swiss-Prot
Match: TRXF_BRANA (Thioredoxin F-type, chloroplastic OS=Brassica napus GN=TRXF PE=2 SV=1) HSP 1 Score: 199.9 bits (507), Expect = 2.4e-50 Identity = 112/179 (62.57%), Postives = 133/179 (74.30%), Query Frame = 1
BLAST of Lsi06G006590 vs. Swiss-Prot
Match: TRXF_ORYSJ (Thioredoxin F, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0913000 PE=2 SV=1) HSP 1 Score: 196.1 bits (497), Expect = 3.4e-49 Identity = 98/128 (76.56%), Postives = 107/128 (83.59%), Query Frame = 1
BLAST of Lsi06G006590 vs. TrEMBL
Match: A0A0A0M340_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G651650 PE=4 SV=1) HSP 1 Score: 325.1 bits (832), Expect = 5.4e-86 Identity = 164/180 (91.11%), Postives = 172/180 (95.56%), Query Frame = 1
BLAST of Lsi06G006590 vs. TrEMBL
Match: W9S6Z2_9ROSA (Thioredoxin F-type OS=Morus notabilis GN=L484_015151 PE=4 SV=1) HSP 1 Score: 249.2 bits (635), Expect = 3.8e-63 Identity = 132/177 (74.58%), Postives = 146/177 (82.49%), Query Frame = 1
BLAST of Lsi06G006590 vs. TrEMBL
Match: A0A061EZE7_THECC (Thioredoxin F-type 1 OS=Theobroma cacao GN=TCM_025160 PE=4 SV=1) HSP 1 Score: 239.6 bits (610), Expect = 3.0e-60 Identity = 132/186 (70.97%), Postives = 147/186 (79.03%), Query Frame = 1
BLAST of Lsi06G006590 vs. TrEMBL
Match: A0A0B0NF42_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_02203 PE=4 SV=1) HSP 1 Score: 236.5 bits (602), Expect = 2.5e-59 Identity = 134/192 (69.79%), Postives = 146/192 (76.04%), Query Frame = 1
BLAST of Lsi06G006590 vs. TrEMBL
Match: A0A0D2VB49_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G132000 PE=4 SV=1) HSP 1 Score: 236.5 bits (602), Expect = 2.5e-59 Identity = 134/192 (69.79%), Postives = 146/192 (76.04%), Query Frame = 1
BLAST of Lsi06G006590 vs. TAIR10
Match: AT3G02730.1 (AT3G02730.1 thioredoxin F-type 1) HSP 1 Score: 202.6 bits (514), Expect = 2.1e-52 Identity = 97/120 (80.83%), Postives = 108/120 (90.00%), Query Frame = 1
BLAST of Lsi06G006590 vs. TAIR10
Match: AT5G16400.1 (AT5G16400.1 thioredoxin F2) HSP 1 Score: 202.2 bits (513), Expect = 2.7e-52 Identity = 116/186 (62.37%), Postives = 129/186 (69.35%), Query Frame = 1
BLAST of Lsi06G006590 vs. TAIR10
Match: AT3G51030.1 (AT3G51030.1 thioredoxin H-type 1) HSP 1 Score: 73.6 bits (179), Expect = 1.4e-13 Identity = 41/105 (39.05%), Postives = 62/105 (59.05%), Query Frame = 1
BLAST of Lsi06G006590 vs. TAIR10
Match: AT5G39950.1 (AT5G39950.1 thioredoxin 2) HSP 1 Score: 69.7 bits (169), Expect = 2.1e-12 Identity = 30/88 (34.09%), Postives = 55/88 (62.50%), Query Frame = 1
BLAST of Lsi06G006590 vs. TAIR10
Match: AT5G42980.1 (AT5G42980.1 thioredoxin 3) HSP 1 Score: 69.7 bits (169), Expect = 2.1e-12 Identity = 29/79 (36.71%), Postives = 54/79 (68.35%), Query Frame = 1
BLAST of Lsi06G006590 vs. NCBI nr
Match: gi|659085863|ref|XP_008443649.1| (PREDICTED: thioredoxin F-type, chloroplastic-like [Cucumis melo]) HSP 1 Score: 335.5 bits (859), Expect = 5.7e-89 Identity = 168/180 (93.33%), Postives = 176/180 (97.78%), Query Frame = 1
BLAST of Lsi06G006590 vs. NCBI nr
Match: gi|449442647|ref|XP_004139092.1| (PREDICTED: thioredoxin F-type, chloroplastic-like [Cucumis sativus]) HSP 1 Score: 325.1 bits (832), Expect = 7.8e-86 Identity = 164/180 (91.11%), Postives = 172/180 (95.56%), Query Frame = 1
BLAST of Lsi06G006590 vs. NCBI nr
Match: gi|703155026|ref|XP_010111095.1| (Thioredoxin F-type [Morus notabilis]) HSP 1 Score: 249.2 bits (635), Expect = 5.4e-63 Identity = 132/177 (74.58%), Postives = 146/177 (82.49%), Query Frame = 1
BLAST of Lsi06G006590 vs. NCBI nr
Match: gi|590638013|ref|XP_007029275.1| (Thioredoxin F-type 1 [Theobroma cacao]) HSP 1 Score: 239.6 bits (610), Expect = 4.3e-60 Identity = 132/186 (70.97%), Postives = 147/186 (79.03%), Query Frame = 1
BLAST of Lsi06G006590 vs. NCBI nr
Match: gi|823263147|ref|XP_012464337.1| (PREDICTED: thioredoxin F-type, chloroplastic-like [Gossypium raimondii]) HSP 1 Score: 236.5 bits (602), Expect = 3.6e-59 Identity = 134/192 (69.79%), Postives = 146/192 (76.04%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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