Cp4.1LG18g02310 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG18g02310
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Thioredoxin
Location	Cp4.1LG18 : 3985762 .. 3987767 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCACAATTCTAAATGACCAAAACACCCCTAACACTTGCGGCAGCTCTCCCAAACCTTAAGGGTATATTCGTAATTCTGTTAACTCGTCCCTCTTGACGTCTTGTCCGGCAGCTTCAGTTCAGTTTCTCCTCCGCCATTCCTGAACCATTTTCGCAATCTCTCTCTCTCTCTTCCATGGCTTTGCGTATTTCTCTCTCTCCGCCGTCGATTAGATCCTCGCCGTCGTTGCCCTGCAGCGGAAGGCAGCCGACTGCCGCAGTTTCCGATGCGAAGAGCGGCTGCTTTAGTTCAAAGAGGTTGAGTGTCACTAGTAGCAGGAGCATTGGTGTTTCCAGTGGAAATCGGTCCTTCAAGGTCAATTCCAGCTTGGAGACTGCTGGCGCTACTGTCGGCACGGTCACCGAGGTCAACAAAGACACGTTTTGGCCCATCGTCAATGCCGCTGGTGATAAAACTGTTGTGCTCGATATGTACACCCAATGGTTCGTGTTTCCGTGCATCCATATGTCTCTGCTTCTTAATTTTGTGATTTCTGTAGGTTACTGCATGAGATTGTTCAGGAATATGGCTCTGGATATGAATGTTATTATAATTGTAGGTCATTTCTGGTTTGCTACTTTCTTTTTACGGACTAGTCGAGCTAGGCGATGCGTAGAGTAGAGTATAGATCTCGTTGTTTATGAAATTGGAAAGAAACTTCGGTGCTAGTTAGTCGCCTGATTGTCAAATGATTCTGAAATGTATATGAGTTTTGATGTATATTATTTTGAATTCACATCTTACACTGGACTAACTTAAGTTCAATAGCTGAAATTTCTGCGACAGTATTAGGAGAAATTGTTTGACGAGGCTGGAACAATGTGGCTGCCACATTGAATAATTTTTATTTTATATTAGATCATTGAGTAATTCTTGGACTGTGTCGTTTGAAATTGTTTGAACAGCTTGTTTGAAGAAGCATCATTGAACTCTGTGTTAAAGGATCTCTAACTTGTTTGAATAATATAGATTTAACCAACTTCATACCACGATTTGGATGCAGAGTAAACTTAATTCAAATCACATCTATATGTTATGACCTTTTGGATCTTTCTGATCTTTCCTTTAGCTTTAATTACACAATGCATGAACTTTTCGCTAATTTTCGGGCAGAATCTTCTCTTTGGCCTTGTTTTGATCTGCTATTTCAGACTCCTTGCGACATTGATCATTTGTGAAAACTGTATATTCATTAATTATTGTCTGTGTTTATGAACTTCCAAGCTTATGATCTTAATTGCCTTTCTTTTTTCATCTTTACATATTACACTAAAGGTGTGGACCATGCAAAGTGATGGCCCCAAAATTTCAAGAATTGTCCGAGAAATATCTCGACGTTGTCTTTCTAAAGCTCGACTGCAACCAAGACAATAAGGTTCGTTTCATGATCCGTACTTTCTTGCAAGAACACTTGAGTTCTGTCTCTCATGGTGATTTTACTTGGCAGCCATTAGCAAAGGAACTCGGGATAAAAGTCGTGCCAACCTTCAAAATTCTGAAGGACAAAAAGGTCGTTAAAGTAGTAACTGGGGCAAAATTTGATGATTTGGTTCTCGCCATTGATGCTGTAAGATCCAGCTGAAAGCTCTCTTCTCTTCTCTTCTTTAGAAATTCAAAGAATATAATGGAAGGAAGAGTATATCTACTCGATTAGATCAATGGTTTTGTGTACTGTTATGTTTTAAGGAAGAAGCAATTCAACAGCGTTCTTCTTCTTGCTAAGATAGTTGGAAATCATTCTGTATATAGATGTTTGGGACAGGAACATTTGAATATAGACAATGACAGTTCCTACATGATCCGAACATTATTTTTCTATGAACATTTGATGTTGGTTGATTTTGTAGTAATCTTCCAAAGTCTTTATGTTTGGTTTTGGGTTGGATTTTTTATGATCTTTTTTATTAGGTTTTAGTTAGAGATGGCACTTTTTTATTAAGCATTTTTTTTAGAGAATTACTAATTTT

mRNA sequence

CCACAATTCTAAATGACCAAAACACCCCTAACACTTGCGGCAGCTCTCCCAAACCTTAAGGGTATATTCGTAATTCTGTTAACTCGTCCCTCTTGACGTCTTGTCCGGCAGCTTCAGTTCAGTTTCTCCTCCGCCATTCCTGAACCATTTTCGCAATCTCTCTCTCTCTCTTCCATGGCTTTGCGTATTTCTCTCTCTCCGCCGTCGATTAGATCCTCGCCGTCGTTGCCCTGCAGCGGAAGGCAGCCGACTGCCGCAGTTTCCGATGCGAAGAGCGGCTGCTTTAGTTCAAAGAGGTTGAGTGTCACTAGTAGCAGGAGCATTGGTGTTTCCAGTGGAAATCGGTCCTTCAAGGTCAATTCCAGCTTGGAGACTGCTGGCGCTACTGTCGGCACGGTCACCGAGGTCAACAAAGACACGTTTTGGCCCATCGTCAATGCCGCTGGTGATAAAACTGTTGTGCTCGATATGTACACCCAATGGTGTGGACCATGCAAAGTGATGGCCCCAAAATTTCAAGAATTGTCCGAGAAATATCTCGACGTTGTCTTTCTAAAGCTCGACTGCAACCAAGACAATAAGCCATTAGCAAAGGAACTCGGGATAAAAGTCGTGCCAACCTTCAAAATTCTGAAGGACAAAAAGGTCGTTAAAGTAGTAACTGGGGCAAAATTTGATGATTTGGTTCTCGCCATTGATGCTGTAAGATCCAGCTGAAAGCTCTCTTCTCTTCTCTTCTTTAGAAATTCAAAGAATATAATGGAAGGAAGAGTATATCTACTCGATTAGATCAATGGTTTTGTGTACTGTTATGTTTTAAGGAAGAAGCAATTCAACAGCGTTCTTCTTCTTGCTAAGATAGTTGGAAATCATTCTGTATATAGATGTTTGGGACAGGAACATTTGAATATAGACAATGACAGTTCCTACATGATCCGAACATTATTTTTCTATGAACATTTGATGTTGGTTGATTTTGTAGTAATCTTCCAAAGTCTTTATGTTTGGTTTTGGGTTGGATTTTTTATGATCTTTTTTATTAGGTTTTAGTTAGAGATGGCACTTTTTTATTAAGCATTTTTTTTAGAGAATTACTAATTTT

Coding sequence (CDS)

ATGGCTTTGCGTATTTCTCTCTCTCCGCCGTCGATTAGATCCTCGCCGTCGTTGCCCTGCAGCGGAAGGCAGCCGACTGCCGCAGTTTCCGATGCGAAGAGCGGCTGCTTTAGTTCAAAGAGGTTGAGTGTCACTAGTAGCAGGAGCATTGGTGTTTCCAGTGGAAATCGGTCCTTCAAGGTCAATTCCAGCTTGGAGACTGCTGGCGCTACTGTCGGCACGGTCACCGAGGTCAACAAAGACACGTTTTGGCCCATCGTCAATGCCGCTGGTGATAAAACTGTTGTGCTCGATATGTACACCCAATGGTGTGGACCATGCAAAGTGATGGCCCCAAAATTTCAAGAATTGTCCGAGAAATATCTCGACGTTGTCTTTCTAAAGCTCGACTGCAACCAAGACAATAAGCCATTAGCAAAGGAACTCGGGATAAAAGTCGTGCCAACCTTCAAAATTCTGAAGGACAAAAAGGTCGTTAAAGTAGTAACTGGGGCAAAATTTGATGATTTGGTTCTCGCCATTGATGCTGTAAGATCCAGCTGA

Protein sequence

MALRISLSPPSIRSSPSLPCSGRQPTAAVSDAKSGCFSSKRLSVTSSRSIGVSSGNRSFKVNSSLETAGATVGTVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEKYLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDKKVVKVVTGAKFDDLVLAIDAVRSS

Homology

[Close]

BLAST of Cp4.1LG18g02310 vs. Swiss-Prot
Match: TRXF_PEA (Thioredoxin F-type, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 1.1e-52
Identity = 123/186 (66.13%), Postives = 142/186 (76.34%), Query Frame = 1


Query: 1   MALRISLSPPSIRSSPSLPCSGRQPTAAVSDAKSGCFSSKRLSVTSSRSIGVS--SGNRS 60
           MAL +  SP  I ++     S  +P+ A S + +  FSS   S+  S+ +G+   S  RS
Sbjct: 1   MALNLCTSPKWIGTTVFDSASSSKPSLASSFSTTS-FSS---SILCSKRVGLQRLSLRRS 60

Query: 61  FKVN--SSLETAG--ATVGTVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKF 120
             V+  SSLETAG   TVG VTEVNKDTFWPIVNAAGDKTVVLDM+T+WCGPCKV+AP +
Sbjct: 61  ISVSVRSSLETAGPTVTVGKVTEVNKDTFWPIVNAAGDKTVVLDMFTKWCGPCKVIAPLY 120

Query: 121 QELSEKYLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDKKVVKVVTGAKFDDLVLAI 180
           +ELS+KYLDVVFLKLDCNQDNK LAKELGIKVVPTFKILKD K+VK VTGAKFDDLV AI
Sbjct: 121 EELSQKYLDVVFLKLDCNQDNKSLAKELGIKVVPTFKILKDNKIVKEVTGAKFDDLVAAI 180

[Close]

BLAST of Cp4.1LG18g02310 vs. Swiss-Prot
Match: TRXF2_ARATH (Thioredoxin F2, chloroplastic OS=Arabidopsis thaliana GN=At5g16400 PE=2 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 2.0e-49
Identity = 113/183 (61.75%), Postives = 132/183 (72.13%), Query Frame = 1


Query: 1   MALRISLSPPSIRSSP--SLPCSGRQPTAAVSDAKSGCFSSKRLSVTSSRSIGVSSGNR- 60
           ++LR++ SP S R SP  S    G  P        +   ++K +   S     + SG R 
Sbjct: 3   LSLRLAPSPTSFRYSPITSTGAGGFSPVKQHCRIPNSGVATK-IGFCSGGGGVLDSGRRI 62

Query: 61  -SFKVNSSLETAGATVGTVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQE 120
            S  V  SLET   TVG VTEV+KDTFWPIV AAGDK VVLDMYTQWCGPCKV+APK++E
Sbjct: 63  GSCVVRCSLETVNVTVGQVTEVDKDTFWPIVKAAGDKIVVLDMYTQWCGPCKVIAPKYKE 122

Query: 121 LSEKYLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDKKVVKVVTGAKFDDLVLAIDA 180
           LSEKY D+VFLKLDCNQDNKPLAKELGI+VVPTFKILKD KVVK VTGAK++DL+ AI+A
Sbjct: 123 LSEKYQDMVFLKLDCNQDNKPLAKELGIRVVPTFKILKDNKVVKEVTGAKYEDLLAAIEA 182

[Close]

BLAST of Cp4.1LG18g02310 vs. Swiss-Prot
Match: TRXF_BRANA (Thioredoxin F-type, chloroplastic OS=Brassica napus GN=TRXF PE=2 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 7.1e-47
Identity = 108/178 (60.67%), Postives = 128/178 (71.91%), Query Frame = 1


Query: 9   PPSIRSSPSLPCSGRQPTAAVSDAKSGCFSSKRLSV-TSSRSIGVSS-----GNRSFKVN 68
           P S+R +PS P +    T   S AK  C       V T++R IG+ S        S  V 
Sbjct: 2   PLSLRLAPS-PTALSPTTGGFSPAKKQCRIPSYSGVATTTRRIGLCSLDYVKRGDSSVVR 61

Query: 69  SSLETAGATVGTVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEKYL 128
            SL+T   +VG VTEV+KDTFWPIV AAG+K VVLDMYTQWCGPCKV+APK++ LSEKY 
Sbjct: 62  CSLQTVNVSVGQVTEVDKDTFWPIVKAAGEKIVVLDMYTQWCGPCKVIAPKYKALSEKYE 121

Query: 129 DVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDKKVVKVVTGAKFDDLVLAIDAVRSS 181
           DVVFLKLDCN +N+PLAKELGI+VVPTFKILKD +VVK VTGAK+DDLV AI+  RS+
Sbjct: 122 DVVFLKLDCNPENRPLAKELGIRVVPTFKILKDNQVVKEVTGAKYDDLVAAIETARSA 178

[Close]

BLAST of Cp4.1LG18g02310 vs. Swiss-Prot
Match: TRXF1_ARATH (Thioredoxin F1, chloroplastic OS=Arabidopsis thaliana GN=At3g02730 PE=1 SV=2)

HSP 1 Score: 188.0 bits (476), Expect = 9.3e-47
Identity = 112/186 (60.22%), Postives = 126/186 (67.74%), Query Frame = 1


Query: 1   MALRISLSPPSIRSSPSLPCSG------RQPTAAVSDAKSGCFSSKRLSVTSSRSIGVSS 60
           M L + LSP     SP+    G      R P + V   K G  S        SR  G SS
Sbjct: 1   MPLSLRLSPSPTALSPTTGGFGPSRKQCRIPYSGVPTTKIGFCS------LDSRKRGDSS 60

Query: 61  GNRSFKVNSSLETAGATVGTVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKF 120
                 V  SLET   +VG VTEV+KDTFWPIV AAG+K VVLDMYTQWCGPCKV+APK+
Sbjct: 61  -----VVRCSLETVNVSVGQVTEVDKDTFWPIVKAAGEKLVVLDMYTQWCGPCKVIAPKY 120

Query: 121 QELSEKYLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDKKVVKVVTGAKFDDLVLAI 180
           + LSEKY DVVFLKLDCN DN+PLAKELGI+VVPTFKILKD KVVK VTGAK+DDLV AI
Sbjct: 121 KALSEKYDDVVFLKLDCNPDNRPLAKELGIRVVPTFKILKDNKVVKEVTGAKYDDLVAAI 175

[Close]

BLAST of Cp4.1LG18g02310 vs. Swiss-Prot
Match: TRXF_MESCR (Thioredoxin F-type, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.3e-45
Identity = 112/193 (58.03%), Postives = 130/193 (67.36%), Query Frame = 1


Query: 1   MALRISLSPPSIRSSPSLPCSGRQPTAAVSDA--------KSGCFSSKRLSVTSSRSIGV 60
           MA+++SLS  S   S + P +   P  +              G  + K +       + +
Sbjct: 1   MAMQLSLSHQSWAKSLASPITSFDPARSPPKRVELGPNCLNGGATAGKLMREKVGERMRM 60

Query: 61  SSGNRSFKVNSSLETA-GAT----VGTVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPC 120
           S   RS  V +SLETA GA     VG VTEV+KDTFWPI N AGDK VVLDMYTQWCGPC
Sbjct: 61  SG--RSCCVKASLETAVGAESETLVGKVTEVDKDTFWPIANGAGDKPVVLDMYTQWCGPC 120

Query: 121 KVMAPKFQELSEKYLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDKKVVKVVTGAKF 180
           KVMAPK+QEL+EK LDVVFLKLDCNQ+NKPLAKELGI+VVPTFKILK  K+V  VTGAKF
Sbjct: 121 KVMAPKYQELAEKLLDVVFLKLDCNQENKPLAKELGIRVVPTFKILKGGKIVDEVTGAKF 180

[Close]

BLAST of Cp4.1LG18g02310 vs. TrEMBL
Match: A0A0A0M340_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G651650 PE=4 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 4.4e-80
Identity = 158/180 (87.78%), Postives = 167/180 (92.78%), Query Frame = 1


Query: 1   MALRISLSPPSIRSSPSLPCSGRQPTAAVSDAKSGCFSSKRLSVTSSRSIGVSSGNRSFK 60
           MAL  SLSPPS+RSSPS PCSGRQP A +S++KSGCFSS+ LS++SSRSIGVS  N SFK
Sbjct: 1   MALHFSLSPPSVRSSPSFPCSGRQPIATLSESKSGCFSSRSLSLSSSRSIGVSGRNGSFK 60

Query: 61  VNSSLETAGATVGTVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEK 120
           VNSSLETAGATVG VTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQ+LSEK
Sbjct: 61  VNSSLETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQDLSEK 120

Query: 121 YLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDKKVVKVVTGAKFDDLVLAIDAVRSS 180
           YLDVVFLKLDCN DNKPLAKELGIKVVPTFKILKDKKVVK VTGAKFD+LV AIDAVRSS
Sbjct: 121 YLDVVFLKLDCNIDNKPLAKELGIKVVPTFKILKDKKVVKEVTGAKFDELVHAIDAVRSS 180

[Close]

BLAST of Cp4.1LG18g02310 vs. TrEMBL
Match: W9S6Z2_9ROSA (Thioredoxin F-type OS=Morus notabilis GN=L484_015151 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 7.9e-61
Identity = 134/184 (72.83%), Postives = 147/184 (79.89%), Query Frame = 1


Query: 1   MALRI--SLSPPSIRSSPSLPCSGRQPTAAVSDAKSGCFSSKRLSVTS-SRSIGVS-SGN 60
           MALR   +LSP S+RS PSLPC+ +Q  A  S + S CF SK+  V   S   G   +G+
Sbjct: 1   MALRSCSTLSPQSVRSPPSLPCAAKQQIALPSSSSSSCFGSKKNVVLRFSGGAGTKRAGS 60

Query: 61  RSFKVNSSLETAGATVGTVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQE 120
            S  V SSLET   TVG VTEVNKD+FWPIVNAAGDKTVVLDMYTQWCGPCKV+APKFQE
Sbjct: 61  YSRSVRSSLETLRPTVGKVTEVNKDSFWPIVNAAGDKTVVLDMYTQWCGPCKVIAPKFQE 120

Query: 121 LSEKYLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDKKVVKVVTGAKFDDLVLAIDA 180
           LSEKYLDVVFLKLDCNQDNK LAKELGI+VVPTFKILKD K+VK VTGAKFDDLV+AID 
Sbjct: 121 LSEKYLDVVFLKLDCNQDNKALAKELGIRVVPTFKILKDSKIVKEVTGAKFDDLVVAIDT 180

[Close]

BLAST of Cp4.1LG18g02310 vs. TrEMBL
Match: A0A061EZE7_THECC (Thioredoxin F-type 1 OS=Theobroma cacao GN=TCM_025160 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 9.6e-59
Identity = 132/186 (70.97%), Postives = 147/186 (79.03%), Query Frame = 1


Query: 3   LRISLSPPS-IRSSPSLPCSGRQPTAAVSDAKSGCFSSKRLSVTSSRSI----GVSSGNR 62
           L+ +LSPPS IRSSPSL C+   P AA   A S   S   L  +SS+++     V++  R
Sbjct: 4   LQFTLSPPSTIRSSPSLSCTAAHPLAASCRASSAWKSCFLLESSSSKTVKAMSNVNNNGR 63

Query: 63  S---FKVNSSLETAGATVGTVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKF 122
           +    KV SSL+TAGA VG V EV KDTFWPIVNAAGDKTVVLDMYTQWCGPCKV+APKF
Sbjct: 64  NGAVVKVRSSLDTAGAKVGQVKEVTKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVIAPKF 123

Query: 123 QELSEKYLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDKKVVKVVTGAKFDDLVLAI 181
           QELSEKYLDVVFLKLDCNQDNKPLAKELGI+VVPTFKILK KK+VK V GAKFDDLVLAI
Sbjct: 124 QELSEKYLDVVFLKLDCNQDNKPLAKELGIRVVPTFKILKHKKIVKEVKGAKFDDLVLAI 183

[Close]

BLAST of Cp4.1LG18g02310 vs. TrEMBL
Match: A0A0B0NF42_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_02203 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 2.0e-56
Identity = 126/186 (67.74%), Postives = 144/186 (77.42%), Query Frame = 1


Query: 3   LRISLSPPS-IRSSPSLPCSGRQPTAA---VSDAKSGCFSSKRLSVTSSRSIGVSSGNRS 62
           L+ S+ PPS +RSSPSL C+   P A+   V    +   + +  S+ +  SI  +  NR 
Sbjct: 4   LQSSVYPPSTLRSSPSLSCTAAHPIASSHRVPSTSNSFVALESSSLKTVNSISSAKNNRR 63

Query: 63  F----KVNSSLETAGATVGTVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKF 122
                KV SSLETAGATVG VTEV KDTFWPIVNAAGDKTVVLDMYTQWCGPCKV+APKF
Sbjct: 64  KGVVGKVRSSLETAGATVGQVTEVTKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVIAPKF 123

Query: 123 QELSEKYLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDKKVVKVVTGAKFDDLVLAI 181
           QELSEKYLDVVFLKLDCNQ+NKPLAKELGI+VVPTFKILK  K+VK VTGAK+DDLV AI
Sbjct: 124 QELSEKYLDVVFLKLDCNQENKPLAKELGIRVVPTFKILKHNKIVKEVTGAKYDDLVAAI 183

[Close]

BLAST of Cp4.1LG18g02310 vs. TrEMBL
Match: A0A0D2VB49_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G132000 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 2.0e-56
Identity = 126/186 (67.74%), Postives = 144/186 (77.42%), Query Frame = 1


Query: 3   LRISLSPPS-IRSSPSLPCSGRQPTAA---VSDAKSGCFSSKRLSVTSSRSIGVSSGNRS 62
           L+ S+ PPS +RSSPSL C+   P A+   V    +   + +  S+ +  SI  +  NR 
Sbjct: 4   LQSSVYPPSTLRSSPSLSCTAAHPIASSHRVPSTSNSFVALESSSLKTVNSISSAKNNRR 63

Query: 63  F----KVNSSLETAGATVGTVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKF 122
                KV SSLETAGATVG VTEV KDTFWPIVNAAGDKTVVLDMYTQWCGPCKV+APKF
Sbjct: 64  KGVVGKVRSSLETAGATVGQVTEVTKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVIAPKF 123

Query: 123 QELSEKYLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDKKVVKVVTGAKFDDLVLAI 181
           QELSEKYLDVVFLKLDCNQ+NKPLAKELGI+VVPTFKILK  K+VK VTGAK+DDLV AI
Sbjct: 124 QELSEKYLDVVFLKLDCNQENKPLAKELGIRVVPTFKILKHNKIVKEVTGAKYDDLVAAI 183

[Close]

BLAST of Cp4.1LG18g02310 vs. TAIR10
Match: AT5G16400.1 (AT5G16400.1 thioredoxin F2)

HSP 1 Score: 196.8 bits (499), Expect = 1.1e-50
Identity = 113/183 (61.75%), Postives = 132/183 (72.13%), Query Frame = 1


Query: 1   MALRISLSPPSIRSSP--SLPCSGRQPTAAVSDAKSGCFSSKRLSVTSSRSIGVSSGNR- 60
           ++LR++ SP S R SP  S    G  P        +   ++K +   S     + SG R 
Sbjct: 3   LSLRLAPSPTSFRYSPITSTGAGGFSPVKQHCRIPNSGVATK-IGFCSGGGGVLDSGRRI 62

Query: 61  -SFKVNSSLETAGATVGTVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQE 120
            S  V  SLET   TVG VTEV+KDTFWPIV AAGDK VVLDMYTQWCGPCKV+APK++E
Sbjct: 63  GSCVVRCSLETVNVTVGQVTEVDKDTFWPIVKAAGDKIVVLDMYTQWCGPCKVIAPKYKE 122

Query: 121 LSEKYLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDKKVVKVVTGAKFDDLVLAIDA 180
           LSEKY D+VFLKLDCNQDNKPLAKELGI+VVPTFKILKD KVVK VTGAK++DL+ AI+A
Sbjct: 123 LSEKYQDMVFLKLDCNQDNKPLAKELGIRVVPTFKILKDNKVVKEVTGAKYEDLLAAIEA 182

[Close]

BLAST of Cp4.1LG18g02310 vs. TAIR10
Match: AT3G02730.1 (AT3G02730.1 thioredoxin F-type 1)

HSP 1 Score: 188.0 bits (476), Expect = 5.2e-48
Identity = 112/186 (60.22%), Postives = 126/186 (67.74%), Query Frame = 1


Query: 1   MALRISLSPPSIRSSPSLPCSG------RQPTAAVSDAKSGCFSSKRLSVTSSRSIGVSS 60
           M L + LSP     SP+    G      R P + V   K G  S        SR  G SS
Sbjct: 1   MPLSLRLSPSPTALSPTTGGFGPSRKQCRIPYSGVPTTKIGFCS------LDSRKRGDSS 60

Query: 61  GNRSFKVNSSLETAGATVGTVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKF 120
                 V  SLET   +VG VTEV+KDTFWPIV AAG+K VVLDMYTQWCGPCKV+APK+
Sbjct: 61  -----VVRCSLETVNVSVGQVTEVDKDTFWPIVKAAGEKLVVLDMYTQWCGPCKVIAPKY 120

Query: 121 QELSEKYLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDKKVVKVVTGAKFDDLVLAI 180
           + LSEKY DVVFLKLDCN DN+PLAKELGI+VVPTFKILKD KVVK VTGAK+DDLV AI
Sbjct: 121 KALSEKYDDVVFLKLDCNPDNRPLAKELGIRVVPTFKILKDNKVVKEVTGAKYDDLVAAI 175

[Close]

BLAST of Cp4.1LG18g02310 vs. TAIR10
Match: AT3G51030.1 (AT3G51030.1 thioredoxin H-type 1)

HSP 1 Score: 69.3 bits (168), Expect = 2.7e-12
Identity = 33/76 (43.42%), Postives = 51/76 (67.11%), Query Frame = 1


Query: 95  VVLDMYTQWCGPCKVMAPKFQELSEKYLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILK 154
           VV+D    WCGPC+ +AP F +L++K  +V+FLK+D   + K +A +  I+ +PTF  LK
Sbjct: 31  VVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVD-TDELKSVASDWAIQAMPTFMFLK 90

Query: 155 DKKVVKVVTGAKFDDL 171
           + K++  V GAK D+L
Sbjct: 91  EGKILDKVVGAKKDEL 105

[Close]

BLAST of Cp4.1LG18g02310 vs. TAIR10
Match: AT5G42980.1 (AT5G42980.1 thioredoxin 3)

HSP 1 Score: 68.6 bits (166), Expect = 4.6e-12
Identity = 29/83 (34.94%), Postives = 56/83 (67.47%), Query Frame = 1


Query: 93  KTVVLDMYTQWCGPCKVMAPKFQELSEKYLDVVFLKLDCNQDNKPLAKELGIKVVPTFKI 152
           K +V+D    WC PC+ +AP F +L++K+LDVVF K+D ++ N  +A+E  ++ +PTF  
Sbjct: 28  KLIVIDFTATWCPPCRFIAPVFADLAKKHLDVVFFKVDVDELN-TVAEEFKVQAMPTFIF 87

Query: 153 LKDKKVVKVVTGAKFDDLVLAID 176
           +K+ ++ + V GA  ++++  ++
Sbjct: 88  MKEGEIKETVVGAAKEEIIANLE 109

[Close]

BLAST of Cp4.1LG18g02310 vs. TAIR10
Match: AT5G39950.1 (AT5G39950.1 thioredoxin 2)

HSP 1 Score: 65.9 bits (159), Expect = 3.0e-11
Identity = 30/88 (34.09%), Postives = 55/88 (62.50%), Query Frame = 1


Query: 92  DKTVVLDMYTQWCGPCKVMAPKFQELSEKYLDVVFLKLDCNQDNKPLAKELGIKVVPTFK 151
           +K +V+D    WCGPC+++ P    +++K+ DV F+KLD + +   +AKE  +  +PTF 
Sbjct: 47  NKLLVVDFSASWCGPCRMIEPAIHAMADKFNDVDFVKLDVD-ELPDVAKEFNVTAMPTFV 106

Query: 152 ILKDKKVVKVVTGAKFDDLVLAIDAVRS 180
           ++K  K ++ + GAK D+L   +  +R+
Sbjct: 107 LVKRGKEIERIIGAKKDELEKKVSKLRA 133

[Close]

BLAST of Cp4.1LG18g02310 vs. NCBI nr
Match: gi|659085863|ref|XP_008443649.1| (PREDICTED: thioredoxin F-type, chloroplastic-like [Cucumis melo])

HSP 1 Score: 316.6 bits (810), Expect = 2.8e-83
Identity = 163/180 (90.56%), Postives = 169/180 (93.89%), Query Frame = 1


Query: 1   MALRISLSPPSIRSSPSLPCSGRQPTAAVSDAKSGCFSSKRLSVTSSRSIGVSSGNRSFK 60
           MAL  SLSPPS+RSSPS PCSGRQP  A+SD+KSGCFSS+ LSV+SSRSIGVS GNRSFK
Sbjct: 1   MALHFSLSPPSVRSSPSFPCSGRQPIPALSDSKSGCFSSRSLSVSSSRSIGVSGGNRSFK 60

Query: 61  VNSSLETAGATVGTVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEK 120
           VNSSLETAGATVG VTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQ+LSEK
Sbjct: 61  VNSSLETAGATVGKVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQDLSEK 120

Query: 121 YLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDKKVVKVVTGAKFDDLVLAIDAVRSS 180
           YLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDKKVVK VTGAKFDDLV AID VRSS
Sbjct: 121 YLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDKKVVKEVTGAKFDDLVHAIDTVRSS 180

[Close]

BLAST of Cp4.1LG18g02310 vs. NCBI nr
Match: gi|449442647|ref|XP_004139092.1| (PREDICTED: thioredoxin F-type, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 305.4 bits (781), Expect = 6.4e-80
Identity = 158/180 (87.78%), Postives = 167/180 (92.78%), Query Frame = 1


Query: 1   MALRISLSPPSIRSSPSLPCSGRQPTAAVSDAKSGCFSSKRLSVTSSRSIGVSSGNRSFK 60
           MAL  SLSPPS+RSSPS PCSGRQP A +S++KSGCFSS+ LS++SSRSIGVS  N SFK
Sbjct: 1   MALHFSLSPPSVRSSPSFPCSGRQPIATLSESKSGCFSSRSLSLSSSRSIGVSGRNGSFK 60

Query: 61  VNSSLETAGATVGTVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEK 120
           VNSSLETAGATVG VTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQ+LSEK
Sbjct: 61  VNSSLETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQDLSEK 120

Query: 121 YLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDKKVVKVVTGAKFDDLVLAIDAVRSS 180
           YLDVVFLKLDCN DNKPLAKELGIKVVPTFKILKDKKVVK VTGAKFD+LV AIDAVRSS
Sbjct: 121 YLDVVFLKLDCNIDNKPLAKELGIKVVPTFKILKDKKVVKEVTGAKFDELVHAIDAVRSS 180

[Close]

BLAST of Cp4.1LG18g02310 vs. NCBI nr
Match: gi|703155026|ref|XP_010111095.1| (Thioredoxin F-type [Morus notabilis])

HSP 1 Score: 241.5 bits (615), Expect = 1.1e-60
Identity = 134/184 (72.83%), Postives = 147/184 (79.89%), Query Frame = 1


Query: 1   MALRI--SLSPPSIRSSPSLPCSGRQPTAAVSDAKSGCFSSKRLSVTS-SRSIGVS-SGN 60
           MALR   +LSP S+RS PSLPC+ +Q  A  S + S CF SK+  V   S   G   +G+
Sbjct: 1   MALRSCSTLSPQSVRSPPSLPCAAKQQIALPSSSSSSCFGSKKNVVLRFSGGAGTKRAGS 60

Query: 61  RSFKVNSSLETAGATVGTVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQE 120
            S  V SSLET   TVG VTEVNKD+FWPIVNAAGDKTVVLDMYTQWCGPCKV+APKFQE
Sbjct: 61  YSRSVRSSLETLRPTVGKVTEVNKDSFWPIVNAAGDKTVVLDMYTQWCGPCKVIAPKFQE 120

Query: 121 LSEKYLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDKKVVKVVTGAKFDDLVLAIDA 180
           LSEKYLDVVFLKLDCNQDNK LAKELGI+VVPTFKILKD K+VK VTGAKFDDLV+AID 
Sbjct: 121 LSEKYLDVVFLKLDCNQDNKALAKELGIRVVPTFKILKDSKIVKEVTGAKFDDLVVAIDT 180

[Close]

BLAST of Cp4.1LG18g02310 vs. NCBI nr
Match: gi|590638013|ref|XP_007029275.1| (Thioredoxin F-type 1 [Theobroma cacao])

HSP 1 Score: 234.6 bits (597), Expect = 1.4e-58
Identity = 132/186 (70.97%), Postives = 147/186 (79.03%), Query Frame = 1


Query: 3   LRISLSPPS-IRSSPSLPCSGRQPTAAVSDAKSGCFSSKRLSVTSSRSI----GVSSGNR 62
           L+ +LSPPS IRSSPSL C+   P AA   A S   S   L  +SS+++     V++  R
Sbjct: 4   LQFTLSPPSTIRSSPSLSCTAAHPLAASCRASSAWKSCFLLESSSSKTVKAMSNVNNNGR 63

Query: 63  S---FKVNSSLETAGATVGTVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKF 122
           +    KV SSL+TAGA VG V EV KDTFWPIVNAAGDKTVVLDMYTQWCGPCKV+APKF
Sbjct: 64  NGAVVKVRSSLDTAGAKVGQVKEVTKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVIAPKF 123

Query: 123 QELSEKYLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDKKVVKVVTGAKFDDLVLAI 181
           QELSEKYLDVVFLKLDCNQDNKPLAKELGI+VVPTFKILK KK+VK V GAKFDDLVLAI
Sbjct: 124 QELSEKYLDVVFLKLDCNQDNKPLAKELGIRVVPTFKILKHKKIVKEVKGAKFDDLVLAI 183

[Close]

BLAST of Cp4.1LG18g02310 vs. NCBI nr
Match: gi|694425211|ref|XP_009340351.1| (PREDICTED: thioredoxin F-type, chloroplastic-like [Pyrus x bretschneideri])

HSP 1 Score: 229.6 bits (584), Expect = 4.4e-57
Identity = 132/187 (70.59%), Postives = 148/187 (79.14%), Query Frame = 1


Query: 1   MALR-ISLSPPSIRSSPSLPCSGRQPTAAVSDA-KSGCFSSKRLSVTSSRSIGVSS---G 60
           MAL+  +LSP SI +SPSLPCS + P    S A  S CF S+R +  +   IG+S    G
Sbjct: 1   MALQSAALSPRSIGASPSLPCSAKYPIICSSSAPSSSCFLSQRKNAAAV-GIGLSKRKMG 60

Query: 61  NRSFKVNSSLETAGATV--GTVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPK 120
           +    V S+L+T G TV  G VTEV+KDTFWPIV AAGDKTVVLDMYTQWCGPCKVMAPK
Sbjct: 61  SWGCTVRSNLDTVGPTVNVGQVTEVDKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVMAPK 120

Query: 121 FQELSEKYLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDKKVVKVVTGAKFDDLVLA 180
           FQELS+KYLDVVFLKLDCNQ+NKPLAKELGI+VVPTFKILKD KVVK V GAKFDDLV+A
Sbjct: 121 FQELSKKYLDVVFLKLDCNQENKPLAKELGIRVVPTFKILKDNKVVKEVKGAKFDDLVVA 180

The following BLAST results are available for this feature:

BLAST of Cp4.1LG18g02310 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TRXF_PEA	1.1e-52	66.13	Thioredoxin F-type, chloroplastic OS=Pisum sativum PE=2 SV=1	[more]
TRXF2_ARATH	2.0e-49	61.75	Thioredoxin F2, chloroplastic OS=Arabidopsis thaliana GN=At5g16400 PE=2 SV=1	[more]
TRXF_BRANA	7.1e-47	60.67	Thioredoxin F-type, chloroplastic OS=Brassica napus GN=TRXF PE=2 SV=1	[more]
TRXF1_ARATH	9.3e-47	60.22	Thioredoxin F1, chloroplastic OS=Arabidopsis thaliana GN=At3g02730 PE=1 SV=2	[more]
TRXF_MESCR	2.3e-45	58.03	Thioredoxin F-type, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1	[more]

BLAST of Cp4.1LG18g02310 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M340_CUCSA	4.4e-80	87.78	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G651650 PE=4 SV=1	[more]
W9S6Z2_9ROSA	7.9e-61	72.83	Thioredoxin F-type OS=Morus notabilis GN=L484_015151 PE=4 SV=1	[more]
A0A061EZE7_THECC	9.6e-59	70.97	Thioredoxin F-type 1 OS=Theobroma cacao GN=TCM_025160 PE=4 SV=1	[more]
A0A0B0NF42_GOSAR	2.0e-56	67.74	Uncharacterized protein OS=Gossypium arboreum GN=F383_02203 PE=4 SV=1	[more]
A0A0D2VB49_GOSRA	2.0e-56	67.74	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G132000 PE=4 SV=1	[more]

BLAST of Cp4.1LG18g02310 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G16400.1	1.1e-50	61.75	thioredoxin F2	[more]
AT3G02730.1	5.2e-48	60.22	thioredoxin F-type 1	[more]
AT3G51030.1	2.7e-12	43.42	thioredoxin H-type 1	[more]
AT5G42980.1	4.6e-12	34.94	thioredoxin 3	[more]
AT5G39950.1	3.0e-11	34.09	thioredoxin 2	[more]

BLAST of Cp4.1LG18g02310 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659085863\|ref\|XP_008443649.1\|	2.8e-83	90.56	PREDICTED: thioredoxin F-type, chloroplastic-like [Cucumis melo]	[more]
gi\|449442647\|ref\|XP_004139092.1\|	6.4e-80	87.78	PREDICTED: thioredoxin F-type, chloroplastic-like [Cucumis sativus]	[more]
gi\|703155026\|ref\|XP_010111095.1\|	1.1e-60	72.83	Thioredoxin F-type [Morus notabilis]	[more]
gi\|590638013\|ref\|XP_007029275.1\|	1.4e-58	70.97	Thioredoxin F-type 1 [Theobroma cacao]	[more]
gi\|694425211\|ref\|XP_009340351.1\|	4.4e-57	70.59	PREDICTED: thioredoxin F-type, chloroplastic-like [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0045454	cell redox homeostasis
GO:0006662	glycerol ether metabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0015035	protein disulfide oxidoreductase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR017937	Thioredoxin_CS
IPR013766	Thioredoxin_domain
IPR012336	Thioredoxin-like_fold
IPR005746	Thioredoxin

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0006662	glycerol ether metabolic process
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005623	cell
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0015035	protein disulfide oxidoreductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG18g02310.1	Cp4.1LG18g02310.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005746	Thioredoxin	PANTHER	PTHR10438	THIOREDOXIN	coord: 3..176 score: 3.2
IPR012336	Thioredoxin-like fold	GENE3D	G3DSA:3.40.30.10		coord: 67..174 score: 8.1
IPR012336	Thioredoxin-like fold	unknown	SSF52833	Thioredoxin-like	coord: 68..176 score: 9.14
IPR013766	Thioredoxin domain	PFAM	PF00085	Thioredoxin	coord: 75..174 score: 9.1
IPR013766	Thioredoxin domain	PROFILE	PS51352	THIOREDOXIN_2	coord: 64..179 score: 13
IPR017937	Thioredoxin, conserved site	PROSITE	PS00194	THIOREDOXIN_1	coord: 96..114 scor
None	No IPR available	PRINTS	PR00421	THIOREDOXIN	coord: 143..154 score: 2.7E-5coord: 95..103 score: 2.7E-5coord: 103..112 score: 2.
None	No IPR available	PANTHER	PTHR10438:SF258	THIOREDOXIN F1, CHLOROPLASTIC-RELATED	coord: 3..176 score: 3.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG18g02310	Cucsa.356300	Cucumber (Gy14) v1	cgycpeB0928
Cp4.1LG18g02310	CmaCh11G009190	Cucurbita maxima (Rimu)	cmacpeB126
Cp4.1LG18g02310	CmoCh10G008840	Cucurbita moschata (Rifu)	cmocpeB055
Cp4.1LG18g02310	CmoCh11G009410	Cucurbita moschata (Rifu)	cmocpeB104
Cp4.1LG18g02310	Cla002178	Watermelon (97103) v1	cpewmB354
Cp4.1LG18g02310	Csa1G651650	Cucumber (Chinese Long) v2	cpecuB349
Cp4.1LG18g02310	MELO3C010009	Melon (DHL92) v3.5.1	cpemeB332
Cp4.1LG18g02310	ClCG03G011670	Watermelon (Charleston Gray)	cpewcgB327
Cp4.1LG18g02310	CSPI01G31880	Wild cucumber (PI 183967)	cpecpiB350
Cp4.1LG18g02310	Lsi06G006590	Bottle gourd (USVL1VR-Ls)	cpelsiB299
Cp4.1LG18g02310	MELO3C010009.2	Melon (DHL92) v3.6.1	cpemedB390
Cp4.1LG18g02310	CsaV3_1G044160	Cucumber (Chinese Long) v3	cpecucB0428
Cp4.1LG18g02310	Bhi02G001149	Wax gourd	cpewgoB0465
Cp4.1LG18g02310	CsGy1G030910	Cucumber (Gy14) v2	cgybcpeB039
Cp4.1LG18g02310	Carg17816	Silver-seed gourd	carcpeB1341
Cp4.1LG18g02310	Carg22709	Silver-seed gourd	carcpeB0757

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG18g02310	Cp4.1LG00g01390	Cucurbita pepo (Zucchini)	cpecpeB006

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG18g02310	Wax gourd	cpewgoB0468
Cp4.1LG18g02310	Cucurbita maxima (Rimu)	cmacpeB080
Cp4.1LG18g02310	Watermelon (97103) v1	cpewmB356
Cp4.1LG18g02310	Melon (DHL92) v3.5.1	cpemeB329
Cp4.1LG18g02310	Melon (DHL92) v3.6.1	cpemedB387