Cp4.1LG00g01390 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG00g01390
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Thioredoxin
Location	Cp4.1LG00 : 3697008 .. 3699345 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTGCGTCTCCCTCTCACTCCGCCGTCGATCAGGCCCTCGACGTCGTTGCCTTGCAACGGAAAGCAACCGATTGCTTCTCTTTCGGACTCGAAGAGCGGCTGCTTCAGTTCAAAGAGCTTGAATGTTACTAGTCGCAGGAGCATTGGTGTTTCCGGTGGAAATCGCTCCTTCAAGGTCAATTCTAGCTTGGAAATTGCCGGAGCAACCGTCGGTCAGGTCACCGAGGTCAACAAGGACACTTTCTGGCCCATCGTCAATGCTGCCGGCGATAAAACCGTTGTGCTCGATATGTACACCCAATGGTTTGTGCTTCTGCGTATCCTTAAGCCTATACTTCTCTTTGTGGTTTCTGTACTTACTATATGAGATTGTTGAGGATTTATGGCTGCCATGATCTTGTGTTTTTATGTCATTTCTGGTTTTCTGATTTTCTGATCTTGGATGGAAATTAGTGAAGGTAGGCGATGCTTAGTTGTGGAGTTTAGATCTCCTAGTTTTAGGAAATTGAAGGGAAACTTTGGTGTTTCTTAGGCGTCTGTTTGTCAAATGTTTCTGAAATTTATATAATTAATCCCTGCAATGAGTTTGACCTAGATTAAAAAATTAAGAACCAGAGGATGACGGGTTTTCCCCCTTCTTTTGAAGCAAGAATTAGGTCTAGAAAACTGGTTTTAGTTTTGTTTTGTGGAATTTTGAGTTCACATCTCTGACTGGACTAGATTAAACTTAATAGCTTGAATTTTTAGGATAATACTAAGATAAATTATTGAGGAGGTTGGTGGTTCTACATTGAGTTATTTTTGCAATCTAAGACCATGTTGGAACAGTTTATAATTCAGACAAGTTCAAGGCAATTCATAATGGGCATTCTCATAATGGGCATTCTTGTGTGAGATCTCACATCGGTTGGAGAGTAGAACGAAATATTCTTTATAAGGGCGTGGAAACCTTTCTTTAGCATACACATTTTAAAAACCTTGAGGGGAAGCCCAACGACGACAAATAGTTGCGAACGGTGGACTTGAATTGTTATAAACGGTATTAGAGGCAGACACTGGGCGATGTGCCAGCGAGGAGGCTGAGCCTTGAAGGGGGGTGGACACAAGGCAGTGTGCCAGCAAGGACGTTGGGCCTCAAAGGGGGGGGNTTTGAAAAGGGAGCGAGTGCTAGCGAGGATGTTGAGCCTCGAAGGGGTGTGGAGTGTGAGATCCCACATCAGTTGGGGAGAAGAACGAAACATTTTTTTATAAGGGTGTGAAAATCTCTTCCTAGCCGATGCCTTTTAAAAGCTTTAAAGAAAAGCCCGAAAAGTAAATACCCAAAGTGGACAATATCTGTTAGTGATAGACTTGGGCGGTTACATTATTTTTCTTATTGCTAGTCATTGCAAAGTTGTCGGAGTCAAGCTAATAAACTCATCTTCCATGTCAAGCAATGTATTTGATATTAGCTGCTTGATTGGTTGTTTCCTTTCCAATAACTTGACATATTTTGGAGGTAATGTTCTCTGTTTTAGGTGAGATTCTATTTGGTGATGGTGCCCTTCTAATGGTGATATGGTTTCTGTTTAACTCTGAAGTAGTTTATTGACGTGTGAATTTTGGGAAAGAAAACTGGAGAACGAATGAGGAAATGGATTCCTAGAAACACAACACAACACAGCTTGTTTATTGTAATTGAAGCATGCCCTGCCTATATGTTGTGACCTCTTGGATCTTACTGATCTTTCCTTAATATCATTATGCATAAATTTGTTAACTAAAAACCCCCTTCTCCAGTGAAGTTTAGATGCTCTACATTTTGCAGATATGGAAATGGATAGGTAGAAATTAGAAACTTTTCCTGGTATTGAAGTTTTTCTGTGCAATTTCAGGCTCCTTGCAACTTCAATCTTCTATGAAGTTCTAGATTCATATGTGTATTGTCATTGTTTTTGGATCCCCAAGCTTAATCTCTTCATTAACTTTCTATATTCATCCTTAAATACTACATTGAAGGTGTGGACCCTGCAAAGTGATGGCTCCCAAATTTCAAGAATTATCTGAGAAATATCTTGACGTTATCTTTCTAAAGCTTGACTGCAACCAAGACAATAAGGTTGGTTCCATGATCCCTACTCTCTTGCTGGAGCTTAGGAATGTATATGCATATGGAAGAACACTTAGCTTTCTCTCTCTTATGGTGATTTATTTGGCAGCCATTGGCAAAGGAACTTGGGATAAAAGTGGTGCCGACATTCAAAATTCTGAAGAATAAAATGGTAGTTAAAGAAGTAACAGGAGCAAAGTATGATGATTTGGTTCATGCCATTGATGCTGTAAGAACCAGCTGA

mRNA sequence

ATGGCTTTGCGTCTCCCTCTCACTCCGCCGTCGATCAGGCCCTCGACGTCGTTGCCTTGCAACGGAAAGCAACCGATTGCTTCTCTTTCGGACTCGAAGAGCGGCTGCTTCAGTTCAAAGAGCTTGAATGTTACTAGTCGCAGGAGCATTGGTGTTTCCGGTGGAAATCGCTCCTTCAAGGTCAATTCTAGCTTGGAAATTGCCGGAGCAACCGTCGGTCAGGTCACCGAGGTCAACAAGGACACTTTCTGGCCCATCGTCAATGCTGCCGGCGATAAAACCGTTGTGCTCGATATGTACACCCAATGGTGTGGACCCTGCAAAGTGATGGCTCCCAAATTTCAAGAATTATCTGAGAAATATCTTGACGTTATCTTTCTAAAGCTTGACTGCAACCAAGACAATAAGCCATTGGCAAAGGAACTTGGGATAAAAGTGGTGCCGACATTCAAAATTCTGAAGAATAAAATGGTAGTTAAAGAAGTAACAGGAGCAAAGTATGATGATTTGGTTCATGCCATTGATGCTGTAAGAACCAGCTGA

Coding sequence (CDS)

ATGGCTTTGCGTCTCCCTCTCACTCCGCCGTCGATCAGGCCCTCGACGTCGTTGCCTTGCAACGGAAAGCAACCGATTGCTTCTCTTTCGGACTCGAAGAGCGGCTGCTTCAGTTCAAAGAGCTTGAATGTTACTAGTCGCAGGAGCATTGGTGTTTCCGGTGGAAATCGCTCCTTCAAGGTCAATTCTAGCTTGGAAATTGCCGGAGCAACCGTCGGTCAGGTCACCGAGGTCAACAAGGACACTTTCTGGCCCATCGTCAATGCTGCCGGCGATAAAACCGTTGTGCTCGATATGTACACCCAATGGTGTGGACCCTGCAAAGTGATGGCTCCCAAATTTCAAGAATTATCTGAGAAATATCTTGACGTTATCTTTCTAAAGCTTGACTGCAACCAAGACAATAAGCCATTGGCAAAGGAACTTGGGATAAAAGTGGTGCCGACATTCAAAATTCTGAAGAATAAAATGGTAGTTAAAGAAGTAACAGGAGCAAAGTATGATGATTTGGTTCATGCCATTGATGCTGTAAGAACCAGCTGA

Protein sequence

MALRLPLTPPSIRPSTSLPCNGKQPIASLSDSKSGCFSSKSLNVTSRRSIGVSGGNRSFKVNSSLEIAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEKYLDVIFLKLDCNQDNKPLAKELGIKVVPTFKILKNKMVVKEVTGAKYDDLVHAIDAVRTS

Homology

[Close]

BLAST of Cp4.1LG00g01390 vs. Swiss-Prot
Match: TRXF_PEA (Thioredoxin F-type, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.3e-51
Identity = 118/190 (62.11%), Postives = 138/190 (72.63%), Query Frame = 1


Query: 1   MALRLPLTPPSIRPSTSLPCNGKQPIASLSDSKSGCFSSKSL--------NVTSRRSIGV 60
           MAL L  +P  I  +     +  +P  + S S +  FSS  L         ++ RRSI V
Sbjct: 1   MALNLCTSPKWIGTTVFDSASSSKPSLASSFSTTS-FSSSILCSKRVGLQRLSLRRSISV 60

Query: 61  SGGNRSFKVNSSLEIAG--ATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVM 120
           S       V SSLE AG   TVG+VTEVNKDTFWPIVNAAGDKTVVLDM+T+WCGPCKV+
Sbjct: 61  S-------VRSSLETAGPTVTVGKVTEVNKDTFWPIVNAAGDKTVVLDMFTKWCGPCKVI 120

Query: 121 APKFQELSEKYLDVIFLKLDCNQDNKPLAKELGIKVVPTFKILKNKMVVKEVTGAKYDDL 180
           AP ++ELS+KYLDV+FLKLDCNQDNK LAKELGIKVVPTFKILK+  +VKEVTGAK+DDL
Sbjct: 121 APLYEELSQKYLDVVFLKLDCNQDNKSLAKELGIKVVPTFKILKDNKIVKEVTGAKFDDL 180

[Close]

BLAST of Cp4.1LG00g01390 vs. Swiss-Prot
Match: TRXF2_ARATH (Thioredoxin F2, chloroplastic OS=Arabidopsis thaliana GN=At5g16400 PE=2 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 3.1e-50
Identity = 114/188 (60.64%), Postives = 132/188 (70.21%), Query Frame = 1


Query: 1   MALRLPLTPPSIR--PSTSLPCNGKQPIA-------SLSDSKSGCFSSKSLNVTSRRSIG 60
           ++LRL  +P S R  P TS    G  P+        S   +K G  S     + S R IG
Sbjct: 3   LSLRLAPSPTSFRYSPITSTGAGGFSPVKQHCRIPNSGVATKIGFCSGGGGVLDSGRRIG 62

Query: 61  VSGGNRSFKVNSSLEIAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMA 120
                 S  V  SLE    TVGQVTEV+KDTFWPIV AAGDK VVLDMYTQWCGPCKV+A
Sbjct: 63  ------SCVVRCSLETVNVTVGQVTEVDKDTFWPIVKAAGDKIVVLDMYTQWCGPCKVIA 122

Query: 121 PKFQELSEKYLDVIFLKLDCNQDNKPLAKELGIKVVPTFKILKNKMVVKEVTGAKYDDLV 180
           PK++ELSEKY D++FLKLDCNQDNKPLAKELGI+VVPTFKILK+  VVKEVTGAKY+DL+
Sbjct: 123 PKYKELSEKYQDMVFLKLDCNQDNKPLAKELGIRVVPTFKILKDNKVVKEVTGAKYEDLL 182

[Close]

BLAST of Cp4.1LG00g01390 vs. Swiss-Prot
Match: TRXF_BRANA (Thioredoxin F-type, chloroplastic OS=Brassica napus GN=TRXF PE=2 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 1.9e-47
Identity = 107/187 (57.22%), Postives = 131/187 (70.05%), Query Frame = 1


Query: 1   MALRLPLTPPSIRPSTSLPCNGKQPIASLSDSKSGC-FSSKSLNVTSRRSIG------VS 60
           ++LRL  +P ++ P+T             S +K  C   S S   T+ R IG      V 
Sbjct: 3   LSLRLAPSPTALSPTTG----------GFSPAKKQCRIPSYSGVATTTRRIGLCSLDYVK 62

Query: 61  GGNRSFKVNSSLEIAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPK 120
            G+ S  V  SL+    +VGQVTEV+KDTFWPIV AAG+K VVLDMYTQWCGPCKV+APK
Sbjct: 63  RGDSSV-VRCSLQTVNVSVGQVTEVDKDTFWPIVKAAGEKIVVLDMYTQWCGPCKVIAPK 122

Query: 121 FQELSEKYLDVIFLKLDCNQDNKPLAKELGIKVVPTFKILKNKMVVKEVTGAKYDDLVHA 180
           ++ LSEKY DV+FLKLDCN +N+PLAKELGI+VVPTFKILK+  VVKEVTGAKYDDLV A
Sbjct: 123 YKALSEKYEDVVFLKLDCNPENRPLAKELGIRVVPTFKILKDNQVVKEVTGAKYDDLVAA 178

[Close]

BLAST of Cp4.1LG00g01390 vs. Swiss-Prot
Match: TRXF1_ARATH (Thioredoxin F1, chloroplastic OS=Arabidopsis thaliana GN=At3g02730 PE=1 SV=2)

HSP 1 Score: 187.6 bits (475), Expect = 1.2e-46
Identity = 107/184 (58.15%), Postives = 130/184 (70.65%), Query Frame = 1


Query: 1   MALRLPLTPPSIRPSTS-LPCNGKQ---PIASLSDSKSGCFSSKSLNVTSRRSIGVSGGN 60
           ++LRL  +P ++ P+T     + KQ   P + +  +K G  S  S      R  G S   
Sbjct: 3   LSLRLSPSPTALSPTTGGFGPSRKQCRIPYSGVPTTKIGFCSLDS------RKRGDSS-- 62

Query: 61  RSFKVNSSLEIAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQE 120
               V  SLE    +VGQVTEV+KDTFWPIV AAG+K VVLDMYTQWCGPCKV+APK++ 
Sbjct: 63  ---VVRCSLETVNVSVGQVTEVDKDTFWPIVKAAGEKLVVLDMYTQWCGPCKVIAPKYKA 122

Query: 121 LSEKYLDVIFLKLDCNQDNKPLAKELGIKVVPTFKILKNKMVVKEVTGAKYDDLVHAIDA 180
           LSEKY DV+FLKLDCN DN+PLAKELGI+VVPTFKILK+  VVKEVTGAKYDDLV AI+ 
Sbjct: 123 LSEKYDDVVFLKLDCNPDNRPLAKELGIRVVPTFKILKDNKVVKEVTGAKYDDLVAAIET 175

[Close]

BLAST of Cp4.1LG00g01390 vs. Swiss-Prot
Match: TRXF_MESCR (Thioredoxin F-type, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.3e-45
Identity = 109/193 (56.48%), Postives = 129/193 (66.84%), Query Frame = 1


Query: 1   MALRLPLTPPSIRPSTSLPCNGKQPIASLSDS--------KSGCFSSKSLNVTSRRSIGV 60
           MA++L L+  S   S + P     P  S              G  + K +       + +
Sbjct: 1   MAMQLSLSHQSWAKSLASPITSFDPARSPPKRVELGPNCLNGGATAGKLMREKVGERMRM 60

Query: 61  SGGNRSFKVNSSLEIA-GAT----VGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPC 120
           SG  RS  V +SLE A GA     VG+VTEV+KDTFWPI N AGDK VVLDMYTQWCGPC
Sbjct: 61  SG--RSCCVKASLETAVGAESETLVGKVTEVDKDTFWPIANGAGDKPVVLDMYTQWCGPC 120

Query: 121 KVMAPKFQELSEKYLDVIFLKLDCNQDNKPLAKELGIKVVPTFKILKNKMVVKEVTGAKY 180
           KVMAPK+QEL+EK LDV+FLKLDCNQ+NKPLAKELGI+VVPTFKILK   +V EVTGAK+
Sbjct: 121 KVMAPKYQELAEKLLDVVFLKLDCNQENKPLAKELGIRVVPTFKILKGGKIVDEVTGAKF 180

[Close]

BLAST of Cp4.1LG00g01390 vs. TrEMBL
Match: A0A0A0M340_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G651650 PE=4 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 4.4e-80
Identity = 152/180 (84.44%), Postives = 168/180 (93.33%), Query Frame = 1


Query: 1   MALRLPLTPPSIRPSTSLPCNGKQPIASLSDSKSGCFSSKSLNVTSRRSIGVSGGNRSFK 60
           MAL   L+PPS+R S S PC+G+QPIA+LS+SKSGCFSS+SL+++S RSIGVSG N SFK
Sbjct: 1   MALHFSLSPPSVRSSPSFPCSGRQPIATLSESKSGCFSSRSLSLSSSRSIGVSGRNGSFK 60

Query: 61  VNSSLEIAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEK 120
           VNSSLE AGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQ+LSEK
Sbjct: 61  VNSSLETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQDLSEK 120

Query: 121 YLDVIFLKLDCNQDNKPLAKELGIKVVPTFKILKNKMVVKEVTGAKYDDLVHAIDAVRTS 180
           YLDV+FLKLDCN DNKPLAKELGIKVVPTFKILK+K VVKEVTGAK+D+LVHAIDAVR+S
Sbjct: 121 YLDVVFLKLDCNIDNKPLAKELGIKVVPTFKILKDKKVVKEVTGAKFDELVHAIDAVRSS 180

[Close]

BLAST of Cp4.1LG00g01390 vs. TrEMBL
Match: W9S6Z2_9ROSA (Thioredoxin F-type OS=Morus notabilis GN=L484_015151 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 1.9e-59
Identity = 131/185 (70.81%), Postives = 143/185 (77.30%), Query Frame = 1


Query: 1   MALRL--PLTPPSIRPSTSLPCNGKQPIASLSDSKSGCFSSKSLNVTSRRSIGVS---GG 60
           MALR    L+P S+R   SLPC  KQ IA  S S S CF SK  NV  R S G      G
Sbjct: 1   MALRSCSTLSPQSVRSPPSLPCAAKQQIALPSSSSSSCFGSKK-NVVLRFSGGAGTKRAG 60

Query: 61  NRSFKVNSSLEIAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQ 120
           + S  V SSLE    TVG+VTEVNKD+FWPIVNAAGDKTVVLDMYTQWCGPCKV+APKFQ
Sbjct: 61  SYSRSVRSSLETLRPTVGKVTEVNKDSFWPIVNAAGDKTVVLDMYTQWCGPCKVIAPKFQ 120

Query: 121 ELSEKYLDVIFLKLDCNQDNKPLAKELGIKVVPTFKILKNKMVVKEVTGAKYDDLVHAID 180
           ELSEKYLDV+FLKLDCNQDNK LAKELGI+VVPTFKILK+  +VKEVTGAK+DDLV AID
Sbjct: 121 ELSEKYLDVVFLKLDCNQDNKALAKELGIRVVPTFKILKDSKIVKEVTGAKFDDLVVAID 180

[Close]

BLAST of Cp4.1LG00g01390 vs. TrEMBL
Match: A0A061EZE7_THECC (Thioredoxin F-type 1 OS=Theobroma cacao GN=TCM_025160 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 6.9e-57
Identity = 125/186 (67.20%), Postives = 144/186 (77.42%), Query Frame = 1


Query: 3   LRLPLTPPS-IRPSTSLPCNGKQPIAS---LSDSKSGCF---SSKSLNVTSRRSIGVSGG 62
           L+  L+PPS IR S SL C    P+A+    S +   CF   SS S  V +  ++  +G 
Sbjct: 4   LQFTLSPPSTIRSSPSLSCTAAHPLAASCRASSAWKSCFLLESSSSKTVKAMSNVNNNGR 63

Query: 63  NRSF-KVNSSLEIAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKF 122
           N +  KV SSL+ AGA VGQV EV KDTFWPIVNAAGDKTVVLDMYTQWCGPCKV+APKF
Sbjct: 64  NGAVVKVRSSLDTAGAKVGQVKEVTKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVIAPKF 123

Query: 123 QELSEKYLDVIFLKLDCNQDNKPLAKELGIKVVPTFKILKNKMVVKEVTGAKYDDLVHAI 181
           QELSEKYLDV+FLKLDCNQDNKPLAKELGI+VVPTFKILK+K +VKEV GAK+DDLV AI
Sbjct: 124 QELSEKYLDVVFLKLDCNQDNKPLAKELGIRVVPTFKILKHKKIVKEVKGAKFDDLVLAI 183

[Close]

BLAST of Cp4.1LG00g01390 vs. TrEMBL
Match: A0A0B0NF42_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_02203 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.2e-56
Identity = 121/179 (67.60%), Postives = 139/179 (77.65%), Query Frame = 1


Query: 9   PPSIRPSTSLPCNGKQPIAS---LSDSKSGCFSSKSLNVTSRRSIGVSGGNRSF----KV 68
           P ++R S SL C    PIAS   +  + +   + +S ++ +  SI  +  NR      KV
Sbjct: 11  PSTLRSSPSLSCTAAHPIASSHRVPSTSNSFVALESSSLKTVNSISSAKNNRRKGVVGKV 70

Query: 69  NSSLEIAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEKY 128
            SSLE AGATVGQVTEV KDTFWPIVNAAGDKTVVLDMYTQWCGPCKV+APKFQELSEKY
Sbjct: 71  RSSLETAGATVGQVTEVTKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVIAPKFQELSEKY 130

Query: 129 LDVIFLKLDCNQDNKPLAKELGIKVVPTFKILKNKMVVKEVTGAKYDDLVHAIDAVRTS 181
           LDV+FLKLDCNQ+NKPLAKELGI+VVPTFKILK+  +VKEVTGAKYDDLV AID VR +
Sbjct: 131 LDVVFLKLDCNQENKPLAKELGIRVVPTFKILKHNKIVKEVTGAKYDDLVAAIDTVRAT 189

[Close]

BLAST of Cp4.1LG00g01390 vs. TrEMBL
Match: A0A0D2VB49_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G132000 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.2e-56
Identity = 121/179 (67.60%), Postives = 139/179 (77.65%), Query Frame = 1


Query: 9   PPSIRPSTSLPCNGKQPIAS---LSDSKSGCFSSKSLNVTSRRSIGVSGGNRSF----KV 68
           P ++R S SL C    PIAS   +  + +   + +S ++ +  SI  +  NR      KV
Sbjct: 11  PSTLRSSPSLSCTAAHPIASSHRVPSTSNSFVALESSSLKTVNSISSAKNNRRKGVVGKV 70

Query: 69  NSSLEIAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEKY 128
            SSLE AGATVGQVTEV KDTFWPIVNAAGDKTVVLDMYTQWCGPCKV+APKFQELSEKY
Sbjct: 71  RSSLETAGATVGQVTEVTKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVIAPKFQELSEKY 130

Query: 129 LDVIFLKLDCNQDNKPLAKELGIKVVPTFKILKNKMVVKEVTGAKYDDLVHAIDAVRTS 181
           LDV+FLKLDCNQ+NKPLAKELGI+VVPTFKILK+  +VKEVTGAKYDDLV AID VR +
Sbjct: 131 LDVVFLKLDCNQENKPLAKELGIRVVPTFKILKHNKIVKEVTGAKYDDLVAAIDTVRAT 189

[Close]

BLAST of Cp4.1LG00g01390 vs. TAIR10
Match: AT5G16400.1 (AT5G16400.1 thioredoxin F2)

HSP 1 Score: 199.5 bits (506), Expect = 1.7e-51
Identity = 114/188 (60.64%), Postives = 132/188 (70.21%), Query Frame = 1


Query: 1   MALRLPLTPPSIR--PSTSLPCNGKQPIA-------SLSDSKSGCFSSKSLNVTSRRSIG 60
           ++LRL  +P S R  P TS    G  P+        S   +K G  S     + S R IG
Sbjct: 3   LSLRLAPSPTSFRYSPITSTGAGGFSPVKQHCRIPNSGVATKIGFCSGGGGVLDSGRRIG 62

Query: 61  VSGGNRSFKVNSSLEIAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMA 120
                 S  V  SLE    TVGQVTEV+KDTFWPIV AAGDK VVLDMYTQWCGPCKV+A
Sbjct: 63  ------SCVVRCSLETVNVTVGQVTEVDKDTFWPIVKAAGDKIVVLDMYTQWCGPCKVIA 122

Query: 121 PKFQELSEKYLDVIFLKLDCNQDNKPLAKELGIKVVPTFKILKNKMVVKEVTGAKYDDLV 180
           PK++ELSEKY D++FLKLDCNQDNKPLAKELGI+VVPTFKILK+  VVKEVTGAKY+DL+
Sbjct: 123 PKYKELSEKYQDMVFLKLDCNQDNKPLAKELGIRVVPTFKILKDNKVVKEVTGAKYEDLL 182

[Close]

BLAST of Cp4.1LG00g01390 vs. TAIR10
Match: AT3G02730.1 (AT3G02730.1 thioredoxin F-type 1)

HSP 1 Score: 187.6 bits (475), Expect = 6.8e-48
Identity = 107/184 (58.15%), Postives = 130/184 (70.65%), Query Frame = 1


Query: 1   MALRLPLTPPSIRPSTS-LPCNGKQ---PIASLSDSKSGCFSSKSLNVTSRRSIGVSGGN 60
           ++LRL  +P ++ P+T     + KQ   P + +  +K G  S  S      R  G S   
Sbjct: 3   LSLRLSPSPTALSPTTGGFGPSRKQCRIPYSGVPTTKIGFCSLDS------RKRGDSS-- 62

Query: 61  RSFKVNSSLEIAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQE 120
               V  SLE    +VGQVTEV+KDTFWPIV AAG+K VVLDMYTQWCGPCKV+APK++ 
Sbjct: 63  ---VVRCSLETVNVSVGQVTEVDKDTFWPIVKAAGEKLVVLDMYTQWCGPCKVIAPKYKA 122

Query: 121 LSEKYLDVIFLKLDCNQDNKPLAKELGIKVVPTFKILKNKMVVKEVTGAKYDDLVHAIDA 180
           LSEKY DV+FLKLDCN DN+PLAKELGI+VVPTFKILK+  VVKEVTGAKYDDLV AI+ 
Sbjct: 123 LSEKYDDVVFLKLDCNPDNRPLAKELGIRVVPTFKILKDNKVVKEVTGAKYDDLVAAIET 175

[Close]

BLAST of Cp4.1LG00g01390 vs. TAIR10
Match: AT3G51030.1 (AT3G51030.1 thioredoxin H-type 1)

HSP 1 Score: 70.1 bits (170), Expect = 1.6e-12
Identity = 40/105 (38.10%), Postives = 60/105 (57.14%), Query Frame = 1


Query: 73  GQVTEVNKDTFW--PIVNAAGDKT-VVLDMYTQWCGPCKVMAPKFQELSEKYLDVIFLKL 132
           GQV   +    W   +  A   KT VV+D    WCGPC+ +AP F +L++K  +V+FLK+
Sbjct: 6   GQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKV 65

Query: 133 DCNQDNKPLAKELGIKVVPTFKILKNKMVVKEVTGAKYDDLVHAI 175
           D   + K +A +  I+ +PTF  LK   ++ +V GAK D+L   I
Sbjct: 66  D-TDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTI 109

[Close]

BLAST of Cp4.1LG00g01390 vs. TAIR10
Match: AT5G42980.1 (AT5G42980.1 thioredoxin 3)

HSP 1 Score: 67.8 bits (164), Expect = 7.9e-12
Identity = 29/87 (33.33%), Postives = 56/87 (64.37%), Query Frame = 1


Query: 93  KTVVLDMYTQWCGPCKVMAPKFQELSEKYLDVIFLKLDCNQDNKPLAKELGIKVVPTFKI 152
           K +V+D    WC PC+ +AP F +L++K+LDV+F K+D ++ N  +A+E  ++ +PTF  
Sbjct: 28  KLIVIDFTATWCPPCRFIAPVFADLAKKHLDVVFFKVDVDELN-TVAEEFKVQAMPTFIF 87

Query: 153 LKNKMVVKEVTGAKYDDLVHAIDAVRT 180
           +K   + + V GA  ++++  ++  +T
Sbjct: 88  MKEGEIKETVVGAAKEEIIANLEKHKT 113

[Close]

BLAST of Cp4.1LG00g01390 vs. TAIR10
Match: AT1G19730.1 (AT1G19730.1 Thioredoxin superfamily protein)

HSP 1 Score: 67.4 bits (163), Expect = 1.0e-11
Identity = 35/105 (33.33%), Postives = 61/105 (58.10%), Query Frame = 1


Query: 70  ATVGQVTEVNKDTFWPIV---NAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEKYL-DVI 129
           A  GQV   + +  W +        +K +V+D    WC PC+++AP F +L++K++   I
Sbjct: 3   AEEGQVIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAI 62

Query: 130 FLKLDCNQDNKPLAKELGIKVVPTFKILKNKMVVKEVTGAKYDDL 171
           F K+D + + + +AKE G++ +PTF  +K   VV ++ GA  +DL
Sbjct: 63  FFKVDVD-ELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKEDL 106

[Close]

BLAST of Cp4.1LG00g01390 vs. NCBI nr
Match: gi|659085863|ref|XP_008443649.1| (PREDICTED: thioredoxin F-type, chloroplastic-like [Cucumis melo])

HSP 1 Score: 313.5 bits (802), Expect = 2.3e-82
Identity = 155/180 (86.11%), Postives = 169/180 (93.89%), Query Frame = 1


Query: 1   MALRLPLTPPSIRPSTSLPCNGKQPIASLSDSKSGCFSSKSLNVTSRRSIGVSGGNRSFK 60
           MAL   L+PPS+R S S PC+G+QPI +LSDSKSGCFSS+SL+V+S RSIGVSGGNRSFK
Sbjct: 1   MALHFSLSPPSVRSSPSFPCSGRQPIPALSDSKSGCFSSRSLSVSSSRSIGVSGGNRSFK 60

Query: 61  VNSSLEIAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEK 120
           VNSSLE AGATVG+VTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQ+LSEK
Sbjct: 61  VNSSLETAGATVGKVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQDLSEK 120

Query: 121 YLDVIFLKLDCNQDNKPLAKELGIKVVPTFKILKNKMVVKEVTGAKYDDLVHAIDAVRTS 180
           YLDV+FLKLDCNQDNKPLAKELGIKVVPTFKILK+K VVKEVTGAK+DDLVHAID VR+S
Sbjct: 121 YLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDKKVVKEVTGAKFDDLVHAIDTVRSS 180

[Close]

BLAST of Cp4.1LG00g01390 vs. NCBI nr
Match: gi|449442647|ref|XP_004139092.1| (PREDICTED: thioredoxin F-type, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 305.4 bits (781), Expect = 6.4e-80
Identity = 152/180 (84.44%), Postives = 168/180 (93.33%), Query Frame = 1


Query: 1   MALRLPLTPPSIRPSTSLPCNGKQPIASLSDSKSGCFSSKSLNVTSRRSIGVSGGNRSFK 60
           MAL   L+PPS+R S S PC+G+QPIA+LS+SKSGCFSS+SL+++S RSIGVSG N SFK
Sbjct: 1   MALHFSLSPPSVRSSPSFPCSGRQPIATLSESKSGCFSSRSLSLSSSRSIGVSGRNGSFK 60

Query: 61  VNSSLEIAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEK 120
           VNSSLE AGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQ+LSEK
Sbjct: 61  VNSSLETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQDLSEK 120

Query: 121 YLDVIFLKLDCNQDNKPLAKELGIKVVPTFKILKNKMVVKEVTGAKYDDLVHAIDAVRTS 180
           YLDV+FLKLDCN DNKPLAKELGIKVVPTFKILK+K VVKEVTGAK+D+LVHAIDAVR+S
Sbjct: 121 YLDVVFLKLDCNIDNKPLAKELGIKVVPTFKILKDKKVVKEVTGAKFDELVHAIDAVRSS 180

[Close]

BLAST of Cp4.1LG00g01390 vs. NCBI nr
Match: gi|703155026|ref|XP_010111095.1| (Thioredoxin F-type [Morus notabilis])

HSP 1 Score: 236.9 bits (603), Expect = 2.8e-59
Identity = 131/185 (70.81%), Postives = 143/185 (77.30%), Query Frame = 1


Query: 1   MALRL--PLTPPSIRPSTSLPCNGKQPIASLSDSKSGCFSSKSLNVTSRRSIGVS---GG 60
           MALR    L+P S+R   SLPC  KQ IA  S S S CF SK  NV  R S G      G
Sbjct: 1   MALRSCSTLSPQSVRSPPSLPCAAKQQIALPSSSSSSCFGSKK-NVVLRFSGGAGTKRAG 60

Query: 61  NRSFKVNSSLEIAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQ 120
           + S  V SSLE    TVG+VTEVNKD+FWPIVNAAGDKTVVLDMYTQWCGPCKV+APKFQ
Sbjct: 61  SYSRSVRSSLETLRPTVGKVTEVNKDSFWPIVNAAGDKTVVLDMYTQWCGPCKVIAPKFQ 120

Query: 121 ELSEKYLDVIFLKLDCNQDNKPLAKELGIKVVPTFKILKNKMVVKEVTGAKYDDLVHAID 180
           ELSEKYLDV+FLKLDCNQDNK LAKELGI+VVPTFKILK+  +VKEVTGAK+DDLV AID
Sbjct: 121 ELSEKYLDVVFLKLDCNQDNKALAKELGIRVVPTFKILKDSKIVKEVTGAKFDDLVVAID 180

[Close]

BLAST of Cp4.1LG00g01390 vs. NCBI nr
Match: gi|590638013|ref|XP_007029275.1| (Thioredoxin F-type 1 [Theobroma cacao])

HSP 1 Score: 228.4 bits (581), Expect = 9.9e-57
Identity = 125/186 (67.20%), Postives = 144/186 (77.42%), Query Frame = 1


Query: 3   LRLPLTPPS-IRPSTSLPCNGKQPIAS---LSDSKSGCF---SSKSLNVTSRRSIGVSGG 62
           L+  L+PPS IR S SL C    P+A+    S +   CF   SS S  V +  ++  +G 
Sbjct: 4   LQFTLSPPSTIRSSPSLSCTAAHPLAASCRASSAWKSCFLLESSSSKTVKAMSNVNNNGR 63

Query: 63  NRSF-KVNSSLEIAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKF 122
           N +  KV SSL+ AGA VGQV EV KDTFWPIVNAAGDKTVVLDMYTQWCGPCKV+APKF
Sbjct: 64  NGAVVKVRSSLDTAGAKVGQVKEVTKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVIAPKF 123

Query: 123 QELSEKYLDVIFLKLDCNQDNKPLAKELGIKVVPTFKILKNKMVVKEVTGAKYDDLVHAI 181
           QELSEKYLDV+FLKLDCNQDNKPLAKELGI+VVPTFKILK+K +VKEV GAK+DDLV AI
Sbjct: 124 QELSEKYLDVVFLKLDCNQDNKPLAKELGIRVVPTFKILKHKKIVKEVKGAKFDDLVLAI 183

[Close]

BLAST of Cp4.1LG00g01390 vs. NCBI nr
Match: gi|823263147|ref|XP_012464337.1| (PREDICTED: thioredoxin F-type, chloroplastic-like [Gossypium raimondii])

HSP 1 Score: 227.6 bits (579), Expect = 1.7e-56
Identity = 121/179 (67.60%), Postives = 139/179 (77.65%), Query Frame = 1


Query: 9   PPSIRPSTSLPCNGKQPIAS---LSDSKSGCFSSKSLNVTSRRSIGVSGGNRSF----KV 68
           P ++R S SL C    PIAS   +  + +   + +S ++ +  SI  +  NR      KV
Sbjct: 11  PSTLRSSPSLSCTAAHPIASSHRVPSTSNSFVALESSSLKTVNSISSAKNNRRKGVVGKV 70

Query: 69  NSSLEIAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEKY 128
            SSLE AGATVGQVTEV KDTFWPIVNAAGDKTVVLDMYTQWCGPCKV+APKFQELSEKY
Sbjct: 71  RSSLETAGATVGQVTEVTKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVIAPKFQELSEKY 130

Query: 129 LDVIFLKLDCNQDNKPLAKELGIKVVPTFKILKNKMVVKEVTGAKYDDLVHAIDAVRTS 181
           LDV+FLKLDCNQ+NKPLAKELGI+VVPTFKILK+  +VKEVTGAKYDDLV AID VR +
Sbjct: 131 LDVVFLKLDCNQENKPLAKELGIRVVPTFKILKHNKIVKEVTGAKYDDLVAAIDTVRAT 189

The following BLAST results are available for this feature:

BLAST of Cp4.1LG00g01390 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TRXF_PEA	1.3e-51	62.11	Thioredoxin F-type, chloroplastic OS=Pisum sativum PE=2 SV=1	[more]
TRXF2_ARATH	3.1e-50	60.64	Thioredoxin F2, chloroplastic OS=Arabidopsis thaliana GN=At5g16400 PE=2 SV=1	[more]
TRXF_BRANA	1.9e-47	57.22	Thioredoxin F-type, chloroplastic OS=Brassica napus GN=TRXF PE=2 SV=1	[more]
TRXF1_ARATH	1.2e-46	58.15	Thioredoxin F1, chloroplastic OS=Arabidopsis thaliana GN=At3g02730 PE=1 SV=2	[more]
TRXF_MESCR	1.3e-45	56.48	Thioredoxin F-type, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1	[more]

BLAST of Cp4.1LG00g01390 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M340_CUCSA	4.4e-80	84.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G651650 PE=4 SV=1	[more]
W9S6Z2_9ROSA	1.9e-59	70.81	Thioredoxin F-type OS=Morus notabilis GN=L484_015151 PE=4 SV=1	[more]
A0A061EZE7_THECC	6.9e-57	67.20	Thioredoxin F-type 1 OS=Theobroma cacao GN=TCM_025160 PE=4 SV=1	[more]
A0A0B0NF42_GOSAR	1.2e-56	67.60	Uncharacterized protein OS=Gossypium arboreum GN=F383_02203 PE=4 SV=1	[more]
A0A0D2VB49_GOSRA	1.2e-56	67.60	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G132000 PE=4 SV=1	[more]

BLAST of Cp4.1LG00g01390 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G16400.1	1.7e-51	60.64	thioredoxin F2	[more]
AT3G02730.1	6.8e-48	58.15	thioredoxin F-type 1	[more]
AT3G51030.1	1.6e-12	38.10	thioredoxin H-type 1	[more]
AT5G42980.1	7.9e-12	33.33	thioredoxin 3	[more]
AT1G19730.1	1.0e-11	33.33	Thioredoxin superfamily protein	[more]

BLAST of Cp4.1LG00g01390 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659085863\|ref\|XP_008443649.1\|	2.3e-82	86.11	PREDICTED: thioredoxin F-type, chloroplastic-like [Cucumis melo]	[more]
gi\|449442647\|ref\|XP_004139092.1\|	6.4e-80	84.44	PREDICTED: thioredoxin F-type, chloroplastic-like [Cucumis sativus]	[more]
gi\|703155026\|ref\|XP_010111095.1\|	2.8e-59	70.81	Thioredoxin F-type [Morus notabilis]	[more]
gi\|590638013\|ref\|XP_007029275.1\|	9.9e-57	67.20	Thioredoxin F-type 1 [Theobroma cacao]	[more]
gi\|823263147\|ref\|XP_012464337.1\|	1.7e-56	67.60	PREDICTED: thioredoxin F-type, chloroplastic-like [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0045454	cell redox homeostasis
GO:0006662	glycerol ether metabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0015035	protein disulfide oxidoreductase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR017937	Thioredoxin_CS
IPR013766	Thioredoxin_domain
IPR012336	Thioredoxin-like_fold
IPR005746	Thioredoxin

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0006662	glycerol ether metabolic process
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005623	cell
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0015035	protein disulfide oxidoreductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG00g01390.1	Cp4.1LG00g01390.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005746	Thioredoxin	PANTHER	PTHR10438	THIOREDOXIN	coord: 3..176 score: 3.0
IPR012336	Thioredoxin-like fold	GENE3D	G3DSA:3.40.30.10		coord: 68..175 score: 1.5
IPR012336	Thioredoxin-like fold	unknown	SSF52833	Thioredoxin-like	coord: 68..177 score: 2.58
IPR013766	Thioredoxin domain	PFAM	PF00085	Thioredoxin	coord: 75..175 score: 2.7
IPR013766	Thioredoxin domain	PROFILE	PS51352	THIOREDOXIN_2	coord: 3..179 score: 12
IPR017937	Thioredoxin, conserved site	PROSITE	PS00194	THIOREDOXIN_1	coord: 96..114 scor
None	No IPR available	PRINTS	PR00421	THIOREDOXIN	coord: 143..154 score: 2.7E-5coord: 95..103 score: 2.7E-5coord: 103..112 score: 2.
None	No IPR available	PANTHER	PTHR10438:SF258	THIOREDOXIN F1, CHLOROPLASTIC-RELATED	coord: 3..176 score: 3.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG00g01390	Cucsa.356300	Cucumber (Gy14) v1	cgycpeB0927
Cp4.1LG00g01390	CmaCh11G009190	Cucurbita maxima (Rimu)	cmacpeB103
Cp4.1LG00g01390	CmoCh11G009410	Cucurbita moschata (Rifu)	cmocpeB079
Cp4.1LG00g01390	CmoCh10G008840	Cucurbita moschata (Rifu)	cmocpeB042
Cp4.1LG00g01390	Cla002178	Watermelon (97103) v1	cpewmB007
Cp4.1LG00g01390	Csa1G651650	Cucumber (Chinese Long) v2	cpecuB000
Cp4.1LG00g01390	MELO3C010009	Melon (DHL92) v3.5.1	cpemeB007
Cp4.1LG00g01390	ClCG03G011670	Watermelon (Charleston Gray)	cpewcgB014
Cp4.1LG00g01390	CSPI01G31880	Wild cucumber (PI 183967)	cpecpiB000
Cp4.1LG00g01390	Lsi06G006590	Bottle gourd (USVL1VR-Ls)	cpelsiB017
Cp4.1LG00g01390	MELO3C010009.2	Melon (DHL92) v3.6.1	cpemedB008
Cp4.1LG00g01390	CsaV3_1G044160	Cucumber (Chinese Long) v3	cpecucB0000
Cp4.1LG00g01390	CsGy1G030910	Cucumber (Gy14) v2	cgybcpeB002
Cp4.1LG00g01390	Carg22709	Silver-seed gourd	carcpeB0756
Cp4.1LG00g01390	Carg17816	Silver-seed gourd	carcpeB1340

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG00g01390	Cp4.1LG18g02310	Cucurbita pepo (Zucchini)	cpecpeB006

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG00g01390	Wax gourd	cpewgoB0018
Cp4.1LG00g01390	Cucurbita maxima (Rimu)	cmacpeB070