Carg22709 (gene) Silver-seed gourd

NameCarg22709
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionThioredoxin
LocationCucurbita_argyrosperma_scaffold_230 : 197799 .. 200526 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCAATGGCTTTGCGTCTCCCTCTCACTCCGCCGTCGATCAGGCCCTCGACGTCGTTGCCTTGCAACGGAAAGCAACCGATTGCTTCTCTTTCGGACTCGAAGAGCGGCTGCTTCAGTTCAAAGAGCTTGAATGTTACCAGTCGCAGGAGCATTGGTGTTTCCGGTGGAAATCGCTCCTTCAAGGTCAATTCTAGCTTAGATATTGCCGGAGCTACCGTCGGCCAGGTCACCGAGGTCAACAAGGACACTTTCTGGCCCATCGTCAATGCTGCCGGCGATAAAACCGTTGTGCTCGATATGTACACCCAATGGTTTGTGCTTCTGCGTATCCTTAAGCCTATACTTCTCTTTGTGGTTTCTGTACTTACTATATGAGATTGTTGAGGAGTTATGGCTGCCATGATCTTGTGTTTGTATGTCATTTCTGGTTTTCTGATTTTCTGATCTTAGGATGGAAATTAGGGAAGGAAGGCGATGCTTAGTTGTGGAGTTTAGATCTCCTAGTTTTAGGAATTGAAGGGAAACTTTGGTGTTTCTTAGGCGTCTGTTTGTCAAATGTTTCTGAAATTCATATAATTAATCCTTGCAATGAGTTTGACCTAGATTAAAAAATTAAGAATCAGAGGATGACGGGTTTTCCCTCTTCTTTTGAAGCAATAGTTAGGTCTAGAAAACTGGTTTTAGTTTTGGTTTGTGGAATTTTGAGTTCAAATCTCTGACTGGACTAGATTAAGCTTAATAGCTTGAATTTTTAGGATAATACTAAGATAAATTATTGAGGAGGTTGGTGGTTCTACATTGAGTTATTTTTGCAATCTAAGACCATGTTGGAACAATTTATAGTTCGGACAAGTTCAAGGCAATTCATAATGGGTATTCTTGTGTGAGATCTCACATCGGTTGGAGAGTAGGGAAAGTAGAATGAGACATTCTTGATAAGGGTGTGGAAACCTCTCTCTAGCCTACACATTTTAAAAACCTTGAGGGGAAGCCTGAAAAGGAAAGCCCAACGACGACAAATAGTTGCTAACGGTAGACTTGAACTGTTACAAATGGTATTAGAGTCGGACATTGGGCGATGTGCCAGCAAGGAGGCTAAGCCCTGAAGGGGGTGGACACAAGGCGGTGTGCCAGTAAGGACAATGGGCCTCAAAGGGGGTGGATTGGGAGGTCTCACGTCGATTTGAAAAGGGAACGAGTGCCAGCGAGAATGCTGGGCCTCGAAGGGGGGTGGAGTGTGAGATCCCACATCGGTTGGGGGAGAAGAACGAAACATTTTTTATAAGAGTGTGAAAACCTCTCCCCAGCAGATGCCTTTTAAAAGCTTTAAGGAAAAGCCTGAAAAGTAATTACCATATCTGTTAGTGGTAGACTTGGGCGGTTACATTTTGCTAATTGCTAGTCATTGCAAAGTTGTCGGAGTCAAGCTAATAAACTCATCTTCCATGTCAAGCAATGTATTTGTATATTCAATGATCCTGTGGAACTAAAATAGATATTAGCTGCTTGATTGGTTGTTTCCTTTCCAATAACTTGACATATTTTGGAGGTAATGTTCTCTGTTTTAGGTGAGATTCTATTTGGTGATGGTGCCCTTCTAATGGTGATATGGTTTCTGTTTAACTCTGAAGTAGTTTATCGATGTGCGAATTTTGGGAAAGAAAACTTGAGAAAGAATGAGGAAATGGATTCCTAGAAACACAACACAACACAGCTTGTTTATTGTAATTGAGGCATGCCCTGCCTACATGTCGTAACCTCTTGGATCTTACTGATCTTTCCTTAATATCATTATGCATAAATTTGTTAACTAAAAACCCCTTTCTCCAGTGAAGTTTAGTTGCTCTACATTTTGCAGATATGGAAATGGATAGATAGAAATTAGAAACTTTTCCTGGTATTGAAGTTTTTCTGTGCAATTTCAGGCTCCTTGCAACTTCAATCTTCTATGAAGTTCTAGATTCATATGTGTATTGTCATTGTTTTTGGATCCCCAAGCTTAACCTCTTCATTAACTTTCTATATTCATCCTTAAATACTACATTGAAGGTGTGGACCCTGCAAAGTGATGGCTCCCAAATTCCAAGAATTGTCTGAGAAATATCTTGACGTTATCTTTCTAAAGCTTGACTGCAACCAAGACAATAAGGTTGGTTCCATGATCCCTACTTTCTTGCTGGAGCTTAGGAATGTATATGCATATGGAAGAACACTTCAGCTTTCTCTCTCTCTCTTATGGTGATTTATTTGGCAGCCATTGGCAAAGGAACTTGGGATAAAAGTGGTGCCGACGTTCAAAATTCTAAAGAATAAAATGGTAGTTAAAGAAGTAACAGGAGCAAAGTATGATGATTTGGTTCATGCCATTGATGCTGTAAGAACCAGCTGAAGACTCACCTCTTTCTAAGTTTATATGTTGCAAGGAAGAGAGAGTATCCACAACTGTTACTTATTTGACTCTCTTGATTTAATGATTTTGTGTACTGTTAAGTCAGTCCTATGGAAGAAGAAGCAATTCAACAATATTCTTATTCTTCTTCCTGCAAAGATAGTTTGGGAAATGGTTCTGTATATATAGATGTTTGGGGCAGGGTTATTTGAATATGGGCAATGACAGTTCACACTTGCTTTTACATGCTTTCCTTTTCTTTGAACATTTGATGGATTCATATTCCCAATGGATTATAGTTATGCA

mRNA sequence

TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCAATGGCTTTGCGTCTCCCTCTCACTCCGCCGTCGATCAGGCCCTCGACGTCGTTGCCTTGCAACGGAAAGCAACCGATTGCTTCTCTTTCGGACTCGAAGAGCGGCTGCTTCAGTTCAAAGAGCTTGAATGTTACCAGTCGCAGGAGCATTGGTGTTTCCGGTGGAAATCGCTCCTTCAAGGTCAATTCTAGCTTAGATATTGCCGGAGCTACCGTCGGCCAGGTCACCGAGGTCAACAAGGACACTTTCTGGCCCATCGTCAATGCTGCCGGCGATAAAACCGTTGTGCTCGATATGTACACCCAATGGTGTGGACCCTGCAAAGTGATGGCTCCCAAATTCCAAGAATTGTCTGAGAAATATCTTGACGTTATCTTTCTAAAGCTTGACTGCAACCAAGACAATAAGCCATTGGCAAAGGAACTTGGGATAAAAGTGGTGCCGACGTTCAAAATTCTAAAGAATAAAATGGTAGTTAAAGAAGTAACAGGAGCAAAGTATGATGATTTGGTTCATGCCATTGATGCTGTAAGAACCAGCTGAAGACTCACCTCTTTCTAAGTTTATATGTTGCAAGGAAGAGAGAGTATCCACAACTGTTACTTATTTGACTCTCTTGATTTAATGATTTTGTGTACTGTTAAGTCAGTCCTATGGAAGAAGAAGCAATTCAACAATATTCTTATTCTTCTTCCTGCAAAGATAGTTTGGGAAATGGTTCTGTATATATAGATGTTTGGGGCAGGGTTATTTGAATATGGGCAATGACAGTTCACACTTGCTTTTACATGCTTTCCTTTTCTTTGAACATTTGATGGATTCATATTCCCAATGGATTATAGTTATGCA

Coding sequence (CDS)

ATGGCTTTGCGTCTCCCTCTCACTCCGCCGTCGATCAGGCCCTCGACGTCGTTGCCTTGCAACGGAAAGCAACCGATTGCTTCTCTTTCGGACTCGAAGAGCGGCTGCTTCAGTTCAAAGAGCTTGAATGTTACCAGTCGCAGGAGCATTGGTGTTTCCGGTGGAAATCGCTCCTTCAAGGTCAATTCTAGCTTAGATATTGCCGGAGCTACCGTCGGCCAGGTCACCGAGGTCAACAAGGACACTTTCTGGCCCATCGTCAATGCTGCCGGCGATAAAACCGTTGTGCTCGATATGTACACCCAATGGTGTGGACCCTGCAAAGTGATGGCTCCCAAATTCCAAGAATTGTCTGAGAAATATCTTGACGTTATCTTTCTAAAGCTTGACTGCAACCAAGACAATAAGCCATTGGCAAAGGAACTTGGGATAAAAGTGGTGCCGACGTTCAAAATTCTAAAGAATAAAATGGTAGTTAAAGAAGTAACAGGAGCAAAGTATGATGATTTGGTTCATGCCATTGATGCTGTAAGAACCAGCTGA

Protein sequence

MALRLPLTPPSIRPSTSLPCNGKQPIASLSDSKSGCFSSKSLNVTSRRSIGVSGGNRSFKVNSSLDIAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEKYLDVIFLKLDCNQDNKPLAKELGIKVVPTFKILKNKMVVKEVTGAKYDDLVHAIDAVRTS
BLAST of Carg22709 vs. NCBI nr
Match: XP_023520633.1 (thioredoxin F-type, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 354.8 bits (909), Expect = 1.8e-94
Identity = 179/180 (99.44%), Postives = 180/180 (100.00%), Query Frame = 0

Query: 1   MALRLPLTPPSIRPSTSLPCNGKQPIASLSDSKSGCFSSKSLNVTSRRSIGVSGGNRSFK 60
           MALRLPLTPPSIRPSTSLPCNGKQPIASLSDSKSGCFSSKSLNVTSRRSIGVSGGNRSFK
Sbjct: 1   MALRLPLTPPSIRPSTSLPCNGKQPIASLSDSKSGCFSSKSLNVTSRRSIGVSGGNRSFK 60

Query: 61  VNSSLDIAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEK 120
           VNSSL+IAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEK
Sbjct: 61  VNSSLEIAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEK 120

Query: 121 YLDVIFLKLDCNQDNKPLAKELGIKVVPTFKILKNKMVVKEVTGAKYDDLVHAIDAVRTS 180
           YLDVIFLKLDCNQDNKPLAKELGIKVVPTFKILKNKMVVKEVTGAKYDDLVHAIDAVRTS
Sbjct: 121 YLDVIFLKLDCNQDNKPLAKELGIKVVPTFKILKNKMVVKEVTGAKYDDLVHAIDAVRTS 180

BLAST of Carg22709 vs. NCBI nr
Match: XP_022933925.1 (thioredoxin F-type, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 354.4 bits (908), Expect = 2.3e-94
Identity = 179/180 (99.44%), Postives = 180/180 (100.00%), Query Frame = 0

Query: 1   MALRLPLTPPSIRPSTSLPCNGKQPIASLSDSKSGCFSSKSLNVTSRRSIGVSGGNRSFK 60
           MALRLPLTPPSIRPSTSLPC+GKQPIASLSDSKSGCFSSKSLNVTSRRSIGVSGGNRSFK
Sbjct: 1   MALRLPLTPPSIRPSTSLPCDGKQPIASLSDSKSGCFSSKSLNVTSRRSIGVSGGNRSFK 60

Query: 61  VNSSLDIAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEK 120
           VNSSLDIAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEK
Sbjct: 61  VNSSLDIAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEK 120

Query: 121 YLDVIFLKLDCNQDNKPLAKELGIKVVPTFKILKNKMVVKEVTGAKYDDLVHAIDAVRTS 180
           YLDVIFLKLDCNQDNKPLAKELGIKVVPTFKILKNKMVVKEVTGAKYDDLVHAIDAVRTS
Sbjct: 121 YLDVIFLKLDCNQDNKPLAKELGIKVVPTFKILKNKMVVKEVTGAKYDDLVHAIDAVRTS 180

BLAST of Carg22709 vs. NCBI nr
Match: XP_022973893.1 (thioredoxin F-type, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 354.4 bits (908), Expect = 2.3e-94
Identity = 179/180 (99.44%), Postives = 179/180 (99.44%), Query Frame = 0

Query: 1   MALRLPLTPPSIRPSTSLPCNGKQPIASLSDSKSGCFSSKSLNVTSRRSIGVSGGNRSFK 60
           MALRLPLTPPSIRPSTSLPCNGK PIASLSDSKSGCFSSKSLNVTSRRSIGVSGGNRSFK
Sbjct: 1   MALRLPLTPPSIRPSTSLPCNGKHPIASLSDSKSGCFSSKSLNVTSRRSIGVSGGNRSFK 60

Query: 61  VNSSLDIAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEK 120
           VNSSLDIAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEK
Sbjct: 61  VNSSLDIAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEK 120

Query: 121 YLDVIFLKLDCNQDNKPLAKELGIKVVPTFKILKNKMVVKEVTGAKYDDLVHAIDAVRTS 180
           YLDVIFLKLDCNQDNKPLAKELGIKVVPTFKILKNKMVVKEVTGAKYDDLVHAIDAVRTS
Sbjct: 121 YLDVIFLKLDCNQDNKPLAKELGIKVVPTFKILKNKMVVKEVTGAKYDDLVHAIDAVRTS 180

BLAST of Carg22709 vs. NCBI nr
Match: XP_022157062.1 (thioredoxin F-type, chloroplastic-like [Momordica charantia])

HSP 1 Score: 318.2 bits (814), Expect = 1.8e-83
Identity = 158/180 (87.78%), Postives = 172/180 (95.56%), Query Frame = 0

Query: 1   MALRLPLTPPSIRPSTSLPCNGKQPIASLSDSKSGCFSSKSLNVTSRRSIGVSGGNRSFK 60
           MALRL L+PPSIR S SLPCNGKQPIA++SDSKS CFSS+SL+VTS RSIG+SGGNR+FK
Sbjct: 1   MALRLSLSPPSIRSSPSLPCNGKQPIAAVSDSKSTCFSSRSLSVTSSRSIGISGGNRTFK 60

Query: 61  VNSSLDIAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEK 120
           VNSSL+ AGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPC+VMAPKFQELSEK
Sbjct: 61  VNSSLETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCRVMAPKFQELSEK 120

Query: 121 YLDVIFLKLDCNQDNKPLAKELGIKVVPTFKILKNKMVVKEVTGAKYDDLVHAIDAVRTS 180
           YLDV+FLKLDCNQDNKPLAKELGIKVVPTFKILK+  VVKEVTGAK+DDLVHAI+AVR+S
Sbjct: 121 YLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDNKVVKEVTGAKFDDLVHAIEAVRSS 180

BLAST of Carg22709 vs. NCBI nr
Match: XP_008443649.1 (PREDICTED: thioredoxin F-type, chloroplastic-like [Cucumis melo])

HSP 1 Score: 312.4 bits (799), Expect = 1.0e-81
Identity = 154/180 (85.56%), Postives = 169/180 (93.89%), Query Frame = 0

Query: 1   MALRLPLTPPSIRPSTSLPCNGKQPIASLSDSKSGCFSSKSLNVTSRRSIGVSGGNRSFK 60
           MAL   L+PPS+R S S PC+G+QPI +LSDSKSGCFSS+SL+V+S RSIGVSGGNRSFK
Sbjct: 1   MALHFSLSPPSVRSSPSFPCSGRQPIPALSDSKSGCFSSRSLSVSSSRSIGVSGGNRSFK 60

Query: 61  VNSSLDIAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEK 120
           VNSSL+ AGATVG+VTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQ+LSEK
Sbjct: 61  VNSSLETAGATVGKVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQDLSEK 120

Query: 121 YLDVIFLKLDCNQDNKPLAKELGIKVVPTFKILKNKMVVKEVTGAKYDDLVHAIDAVRTS 180
           YLDV+FLKLDCNQDNKPLAKELGIKVVPTFKILK+K VVKEVTGAK+DDLVHAID VR+S
Sbjct: 121 YLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDKKVVKEVTGAKFDDLVHAIDTVRSS 180

BLAST of Carg22709 vs. TAIR10
Match: AT5G16400.1 (thioredoxin F2)

HSP 1 Score: 198.7 bits (504), Expect = 3.0e-51
Identity = 113/188 (60.11%), Postives = 132/188 (70.21%), Query Frame = 0

Query: 1   MALRLPLTPPSIR--PSTSLPCNGKQPIA-------SLSDSKSGCFSSKSLNVTSRRSIG 60
           ++LRL  +P S R  P TS    G  P+        S   +K G  S     + S R IG
Sbjct: 3   LSLRLAPSPTSFRYSPITSTGAGGFSPVKQHCRIPNSGVATKIGFCSGGGGVLDSGRRIG 62

Query: 61  VSGGNRSFKVNSSLDIAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMA 120
                 S  V  SL+    TVGQVTEV+KDTFWPIV AAGDK VVLDMYTQWCGPCKV+A
Sbjct: 63  ------SCVVRCSLETVNVTVGQVTEVDKDTFWPIVKAAGDKIVVLDMYTQWCGPCKVIA 122

Query: 121 PKFQELSEKYLDVIFLKLDCNQDNKPLAKELGIKVVPTFKILKNKMVVKEVTGAKYDDLV 180
           PK++ELSEKY D++FLKLDCNQDNKPLAKELGI+VVPTFKILK+  VVKEVTGAKY+DL+
Sbjct: 123 PKYKELSEKYQDMVFLKLDCNQDNKPLAKELGIRVVPTFKILKDNKVVKEVTGAKYEDLL 182

BLAST of Carg22709 vs. TAIR10
Match: AT3G02730.1 (thioredoxin F-type 1)

HSP 1 Score: 187.6 bits (475), Expect = 6.8e-48
Identity = 105/184 (57.07%), Postives = 131/184 (71.20%), Query Frame = 0

Query: 1   MALRLPLTPPSIRPST-SLPCNGKQ---PIASLSDSKSGCFSSKSLNVTSRRSIGVSGGN 60
           ++LRL  +P ++ P+T     + KQ   P + +  +K G  S     + SR+        
Sbjct: 3   LSLRLSPSPTALSPTTGGFGPSRKQCRIPYSGVPTTKIGFCS-----LDSRKR------G 62

Query: 61  RSFKVNSSLDIAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQE 120
            S  V  SL+    +VGQVTEV+KDTFWPIV AAG+K VVLDMYTQWCGPCKV+APK++ 
Sbjct: 63  DSSVVRCSLETVNVSVGQVTEVDKDTFWPIVKAAGEKLVVLDMYTQWCGPCKVIAPKYKA 122

Query: 121 LSEKYLDVIFLKLDCNQDNKPLAKELGIKVVPTFKILKNKMVVKEVTGAKYDDLVHAIDA 180
           LSEKY DV+FLKLDCN DN+PLAKELGI+VVPTFKILK+  VVKEVTGAKYDDLV AI+ 
Sbjct: 123 LSEKYDDVVFLKLDCNPDNRPLAKELGIRVVPTFKILKDNKVVKEVTGAKYDDLVAAIET 175

BLAST of Carg22709 vs. TAIR10
Match: AT3G51030.1 (thioredoxin H-type 1)

HSP 1 Score: 70.1 bits (170), Expect = 1.6e-12
Identity = 40/105 (38.10%), Postives = 60/105 (57.14%), Query Frame = 0

Query: 73  GQVTEVNKDTFW--PIVNAAGDKT-VVLDMYTQWCGPCKVMAPKFQELSEKYLDVIFLKL 132
           GQV   +    W   +  A   KT VV+D    WCGPC+ +AP F +L++K  +V+FLK+
Sbjct: 6   GQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKV 65

Query: 133 DCNQDNKPLAKELGIKVVPTFKILKNKMVVKEVTGAKYDDLVHAI 175
           D   + K +A +  I+ +PTF  LK   ++ +V GAK D+L   I
Sbjct: 66  D-TDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTI 109

BLAST of Carg22709 vs. TAIR10
Match: AT5G42980.1 (thioredoxin 3)

HSP 1 Score: 67.8 bits (164), Expect = 7.9e-12
Identity = 29/87 (33.33%), Postives = 56/87 (64.37%), Query Frame = 0

Query: 93  KTVVLDMYTQWCGPCKVMAPKFQELSEKYLDVIFLKLDCNQDNKPLAKELGIKVVPTFKI 152
           K +V+D    WC PC+ +AP F +L++K+LDV+F K+D ++ N  +A+E  ++ +PTF  
Sbjct: 28  KLIVIDFTATWCPPCRFIAPVFADLAKKHLDVVFFKVDVDELN-TVAEEFKVQAMPTFIF 87

Query: 153 LKNKMVVKEVTGAKYDDLVHAIDAVRT 180
           +K   + + V GA  ++++  ++  +T
Sbjct: 88  MKEGEIKETVVGAAKEEIIANLEKHKT 113

BLAST of Carg22709 vs. TAIR10
Match: AT1G19730.1 (Thioredoxin superfamily protein)

HSP 1 Score: 67.4 bits (163), Expect = 1.0e-11
Identity = 35/105 (33.33%), Postives = 61/105 (58.10%), Query Frame = 0

Query: 70  ATVGQVTEVNKDTFWPI---VNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEKYL-DVI 129
           A  GQV   + +  W +        +K +V+D    WC PC+++AP F +L++K++   I
Sbjct: 3   AEEGQVIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAI 62

Query: 130 FLKLDCNQDNKPLAKELGIKVVPTFKILKNKMVVKEVTGAKYDDL 171
           F K+D + + + +AKE G++ +PTF  +K   VV ++ GA  +DL
Sbjct: 63  FFKVDVD-ELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKEDL 106

BLAST of Carg22709 vs. Swiss-Prot
Match: sp|P29450|TRXF_PEA (Thioredoxin F-type, chloroplastic OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 2.8e-51
Identity = 117/190 (61.58%), Postives = 138/190 (72.63%), Query Frame = 0

Query: 1   MALRLPLTPPSIRPSTSLPCNGKQPIASLSDSKSGCFSSKSL--------NVTSRRSIGV 60
           MAL L  +P  I  +     +  +P  + S S +  FSS  L         ++ RRSI V
Sbjct: 1   MALNLCTSPKWIGTTVFDSASSSKPSLASSFSTTS-FSSSILCSKRVGLQRLSLRRSISV 60

Query: 61  SGGNRSFKVNSSLDIAG--ATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVM 120
           S       V SSL+ AG   TVG+VTEVNKDTFWPIVNAAGDKTVVLDM+T+WCGPCKV+
Sbjct: 61  S-------VRSSLETAGPTVTVGKVTEVNKDTFWPIVNAAGDKTVVLDMFTKWCGPCKVI 120

Query: 121 APKFQELSEKYLDVIFLKLDCNQDNKPLAKELGIKVVPTFKILKNKMVVKEVTGAKYDDL 180
           AP ++ELS+KYLDV+FLKLDCNQDNK LAKELGIKVVPTFKILK+  +VKEVTGAK+DDL
Sbjct: 121 APLYEELSQKYLDVVFLKLDCNQDNKSLAKELGIKVVPTFKILKDNKIVKEVTGAKFDDL 180

BLAST of Carg22709 vs. Swiss-Prot
Match: sp|Q9XFH9|TRXF2_ARATH (Thioredoxin F2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g16400 PE=2 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 5.3e-50
Identity = 113/188 (60.11%), Postives = 132/188 (70.21%), Query Frame = 0

Query: 1   MALRLPLTPPSIR--PSTSLPCNGKQPIA-------SLSDSKSGCFSSKSLNVTSRRSIG 60
           ++LRL  +P S R  P TS    G  P+        S   +K G  S     + S R IG
Sbjct: 3   LSLRLAPSPTSFRYSPITSTGAGGFSPVKQHCRIPNSGVATKIGFCSGGGGVLDSGRRIG 62

Query: 61  VSGGNRSFKVNSSLDIAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMA 120
                 S  V  SL+    TVGQVTEV+KDTFWPIV AAGDK VVLDMYTQWCGPCKV+A
Sbjct: 63  ------SCVVRCSLETVNVTVGQVTEVDKDTFWPIVKAAGDKIVVLDMYTQWCGPCKVIA 122

Query: 121 PKFQELSEKYLDVIFLKLDCNQDNKPLAKELGIKVVPTFKILKNKMVVKEVTGAKYDDLV 180
           PK++ELSEKY D++FLKLDCNQDNKPLAKELGI+VVPTFKILK+  VVKEVTGAKY+DL+
Sbjct: 123 PKYKELSEKYQDMVFLKLDCNQDNKPLAKELGIRVVPTFKILKDNKVVKEVTGAKYEDLL 182

BLAST of Carg22709 vs. Swiss-Prot
Match: sp|O48897|TRXF_BRANA (Thioredoxin F-type, chloroplastic OS=Brassica napus OX=3708 GN=TRXF PE=2 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 2.5e-47
Identity = 107/187 (57.22%), Postives = 130/187 (69.52%), Query Frame = 0

Query: 1   MALRLPLTPPSIRPSTSLPCNGKQPIASLSDSKSGC-FSSKSLNVTSRRSIG------VS 60
           ++LRL  +P ++ P+T             S +K  C   S S   T+ R IG      V 
Sbjct: 3   LSLRLAPSPTALSPTT----------GGFSPAKKQCRIPSYSGVATTTRRIGLCSLDYVK 62

Query: 61  GGNRSFKVNSSLDIAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPK 120
            G+ S  V  SL     +VGQVTEV+KDTFWPIV AAG+K VVLDMYTQWCGPCKV+APK
Sbjct: 63  RGDSSV-VRCSLQTVNVSVGQVTEVDKDTFWPIVKAAGEKIVVLDMYTQWCGPCKVIAPK 122

Query: 121 FQELSEKYLDVIFLKLDCNQDNKPLAKELGIKVVPTFKILKNKMVVKEVTGAKYDDLVHA 180
           ++ LSEKY DV+FLKLDCN +N+PLAKELGI+VVPTFKILK+  VVKEVTGAKYDDLV A
Sbjct: 123 YKALSEKYEDVVFLKLDCNPENRPLAKELGIRVVPTFKILKDNQVVKEVTGAKYDDLVAA 178

BLAST of Carg22709 vs. Swiss-Prot
Match: sp|Q9XFH8|TRXF1_ARATH (Thioredoxin F1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g02730 PE=1 SV=2)

HSP 1 Score: 187.6 bits (475), Expect = 1.2e-46
Identity = 105/184 (57.07%), Postives = 131/184 (71.20%), Query Frame = 0

Query: 1   MALRLPLTPPSIRPST-SLPCNGKQ---PIASLSDSKSGCFSSKSLNVTSRRSIGVSGGN 60
           ++LRL  +P ++ P+T     + KQ   P + +  +K G  S     + SR+        
Sbjct: 3   LSLRLSPSPTALSPTTGGFGPSRKQCRIPYSGVPTTKIGFCS-----LDSRKR------G 62

Query: 61  RSFKVNSSLDIAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQE 120
            S  V  SL+    +VGQVTEV+KDTFWPIV AAG+K VVLDMYTQWCGPCKV+APK++ 
Sbjct: 63  DSSVVRCSLETVNVSVGQVTEVDKDTFWPIVKAAGEKLVVLDMYTQWCGPCKVIAPKYKA 122

Query: 121 LSEKYLDVIFLKLDCNQDNKPLAKELGIKVVPTFKILKNKMVVKEVTGAKYDDLVHAIDA 180
           LSEKY DV+FLKLDCN DN+PLAKELGI+VVPTFKILK+  VVKEVTGAKYDDLV AI+ 
Sbjct: 123 LSEKYDDVVFLKLDCNPDNRPLAKELGIRVVPTFKILKDNKVVKEVTGAKYDDLVAAIET 175

BLAST of Carg22709 vs. Swiss-Prot
Match: sp|O81332|TRXF_MESCR (Thioredoxin F-type, chloroplastic OS=Mesembryanthemum crystallinum OX=3544 PE=2 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 3.0e-45
Identity = 108/193 (55.96%), Postives = 129/193 (66.84%), Query Frame = 0

Query: 1   MALRLPLTPPSIRPSTSLPCNGKQPIASLSDS--------KSGCFSSKSLNVTSRRSIGV 60
           MA++L L+  S   S + P     P  S              G  + K +       + +
Sbjct: 1   MAMQLSLSHQSWAKSLASPITSFDPARSPPKRVELGPNCLNGGATAGKLMREKVGERMRM 60

Query: 61  SGGNRSFKVNSSLDIA-GA----TVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPC 120
           SG  RS  V +SL+ A GA     VG+VTEV+KDTFWPI N AGDK VVLDMYTQWCGPC
Sbjct: 61  SG--RSCCVKASLETAVGAESETLVGKVTEVDKDTFWPIANGAGDKPVVLDMYTQWCGPC 120

Query: 121 KVMAPKFQELSEKYLDVIFLKLDCNQDNKPLAKELGIKVVPTFKILKNKMVVKEVTGAKY 180
           KVMAPK+QEL+EK LDV+FLKLDCNQ+NKPLAKELGI+VVPTFKILK   +V EVTGAK+
Sbjct: 121 KVMAPKYQELAEKLLDVVFLKLDCNQENKPLAKELGIRVVPTFKILKGGKIVDEVTGAKF 180

BLAST of Carg22709 vs. TrEMBL
Match: tr|A0A1S3B9B3|A0A1S3B9B3_CUCME (thioredoxin F-type, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103487196 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 6.7e-82
Identity = 154/180 (85.56%), Postives = 169/180 (93.89%), Query Frame = 0

Query: 1   MALRLPLTPPSIRPSTSLPCNGKQPIASLSDSKSGCFSSKSLNVTSRRSIGVSGGNRSFK 60
           MAL   L+PPS+R S S PC+G+QPI +LSDSKSGCFSS+SL+V+S RSIGVSGGNRSFK
Sbjct: 1   MALHFSLSPPSVRSSPSFPCSGRQPIPALSDSKSGCFSSRSLSVSSSRSIGVSGGNRSFK 60

Query: 61  VNSSLDIAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEK 120
           VNSSL+ AGATVG+VTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQ+LSEK
Sbjct: 61  VNSSLETAGATVGKVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQDLSEK 120

Query: 121 YLDVIFLKLDCNQDNKPLAKELGIKVVPTFKILKNKMVVKEVTGAKYDDLVHAIDAVRTS 180
           YLDV+FLKLDCNQDNKPLAKELGIKVVPTFKILK+K VVKEVTGAK+DDLVHAID VR+S
Sbjct: 121 YLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDKKVVKEVTGAKFDDLVHAIDTVRSS 180

BLAST of Carg22709 vs. TrEMBL
Match: tr|A0A0A0M340|A0A0A0M340_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G651650 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 1.8e-79
Identity = 151/180 (83.89%), Postives = 168/180 (93.33%), Query Frame = 0

Query: 1   MALRLPLTPPSIRPSTSLPCNGKQPIASLSDSKSGCFSSKSLNVTSRRSIGVSGGNRSFK 60
           MAL   L+PPS+R S S PC+G+QPIA+LS+SKSGCFSS+SL+++S RSIGVSG N SFK
Sbjct: 1   MALHFSLSPPSVRSSPSFPCSGRQPIATLSESKSGCFSSRSLSLSSSRSIGVSGRNGSFK 60

Query: 61  VNSSLDIAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEK 120
           VNSSL+ AGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQ+LSEK
Sbjct: 61  VNSSLETAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQDLSEK 120

Query: 121 YLDVIFLKLDCNQDNKPLAKELGIKVVPTFKILKNKMVVKEVTGAKYDDLVHAIDAVRTS 180
           YLDV+FLKLDCN DNKPLAKELGIKVVPTFKILK+K VVKEVTGAK+D+LVHAIDAVR+S
Sbjct: 121 YLDVVFLKLDCNIDNKPLAKELGIKVVPTFKILKDKKVVKEVTGAKFDELVHAIDAVRSS 180

BLAST of Carg22709 vs. TrEMBL
Match: tr|W9S6Z2|W9S6Z2_9ROSA (Thioredoxin F-type OS=Morus notabilis OX=981085 GN=L484_015151 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 8.0e-59
Identity = 130/185 (70.27%), Postives = 143/185 (77.30%), Query Frame = 0

Query: 1   MALR--LPLTPPSIRPSTSLPCNGKQPIASLSDSKSGCFSSKSLNVTSRRSIGVS---GG 60
           MALR    L+P S+R   SLPC  KQ IA  S S S CF SK  NV  R S G      G
Sbjct: 1   MALRSCSTLSPQSVRSPPSLPCAAKQQIALPSSSSSSCFGSKK-NVVLRFSGGAGTKRAG 60

Query: 61  NRSFKVNSSLDIAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQ 120
           + S  V SSL+    TVG+VTEVNKD+FWPIVNAAGDKTVVLDMYTQWCGPCKV+APKFQ
Sbjct: 61  SYSRSVRSSLETLRPTVGKVTEVNKDSFWPIVNAAGDKTVVLDMYTQWCGPCKVIAPKFQ 120

Query: 121 ELSEKYLDVIFLKLDCNQDNKPLAKELGIKVVPTFKILKNKMVVKEVTGAKYDDLVHAID 180
           ELSEKYLDV+FLKLDCNQDNK LAKELGI+VVPTFKILK+  +VKEVTGAK+DDLV AID
Sbjct: 121 ELSEKYLDVVFLKLDCNQDNKALAKELGIRVVPTFKILKDSKIVKEVTGAKFDDLVVAID 180

BLAST of Carg22709 vs. TrEMBL
Match: tr|A0A061EZE7|A0A061EZE7_THECC (Thioredoxin F-type 1 OS=Theobroma cacao OX=3641 GN=TCM_025160 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 4.4e-57
Identity = 126/186 (67.74%), Postives = 144/186 (77.42%), Query Frame = 0

Query: 3   LRLPLTPPS-IRPSTSLPCNGKQPIAS---LSDSKSGCF---SSKSLNVTSRRSIGVSGG 62
           L+  L+PPS IR S SL C    P+A+    S +   CF   SS S  V +  ++  +G 
Sbjct: 4   LQFTLSPPSTIRSSPSLSCTAAHPLAASCRASSAWKSCFLLESSSSKTVKAMSNVNNNGR 63

Query: 63  NRS-FKVNSSLDIAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKF 122
           N +  KV SSLD AGA VGQV EV KDTFWPIVNAAGDKTVVLDMYTQWCGPCKV+APKF
Sbjct: 64  NGAVVKVRSSLDTAGAKVGQVKEVTKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVIAPKF 123

Query: 123 QELSEKYLDVIFLKLDCNQDNKPLAKELGIKVVPTFKILKNKMVVKEVTGAKYDDLVHAI 181
           QELSEKYLDV+FLKLDCNQDNKPLAKELGI+VVPTFKILK+K +VKEV GAK+DDLV AI
Sbjct: 124 QELSEKYLDVVFLKLDCNQDNKPLAKELGIRVVPTFKILKHKKIVKEVKGAKFDDLVLAI 183

BLAST of Carg22709 vs. TrEMBL
Match: tr|A0A0B0NF42|A0A0B0NF42_GOSAR (Uncharacterized protein OS=Gossypium arboreum OX=29729 GN=F383_02203 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 3.7e-56
Identity = 120/179 (67.04%), Postives = 139/179 (77.65%), Query Frame = 0

Query: 9   PPSIRPSTSLPCNGKQPIAS---LSDSKSGCFSSKSLNVTSRRSIGVSGGNRS----FKV 68
           P ++R S SL C    PIAS   +  + +   + +S ++ +  SI  +  NR      KV
Sbjct: 11  PSTLRSSPSLSCTAAHPIASSHRVPSTSNSFVALESSSLKTVNSISSAKNNRRKGVVGKV 70

Query: 69  NSSLDIAGATVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVMAPKFQELSEKY 128
            SSL+ AGATVGQVTEV KDTFWPIVNAAGDKTVVLDMYTQWCGPCKV+APKFQELSEKY
Sbjct: 71  RSSLETAGATVGQVTEVTKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVIAPKFQELSEKY 130

Query: 129 LDVIFLKLDCNQDNKPLAKELGIKVVPTFKILKNKMVVKEVTGAKYDDLVHAIDAVRTS 181
           LDV+FLKLDCNQ+NKPLAKELGI+VVPTFKILK+  +VKEVTGAKYDDLV AID VR +
Sbjct: 131 LDVVFLKLDCNQENKPLAKELGIRVVPTFKILKHNKIVKEVTGAKYDDLVAAIDTVRAT 189

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023520633.11.8e-9499.44thioredoxin F-type, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
XP_022933925.12.3e-9499.44thioredoxin F-type, chloroplastic-like [Cucurbita moschata][more]
XP_022973893.12.3e-9499.44thioredoxin F-type, chloroplastic-like [Cucurbita maxima][more]
XP_022157062.11.8e-8387.78thioredoxin F-type, chloroplastic-like [Momordica charantia][more]
XP_008443649.11.0e-8185.56PREDICTED: thioredoxin F-type, chloroplastic-like [Cucumis melo][more]
Match NameE-valueIdentityDescription
AT5G16400.13.0e-5160.11thioredoxin F2[more]
AT3G02730.16.8e-4857.07thioredoxin F-type 1[more]
AT3G51030.11.6e-1238.10thioredoxin H-type 1[more]
AT5G42980.17.9e-1233.33thioredoxin 3[more]
AT1G19730.11.0e-1133.33Thioredoxin superfamily protein[more]
Match NameE-valueIdentityDescription
sp|P29450|TRXF_PEA2.8e-5161.58Thioredoxin F-type, chloroplastic OS=Pisum sativum OX=3888 PE=2 SV=1[more]
sp|Q9XFH9|TRXF2_ARATH5.3e-5060.11Thioredoxin F2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g16400 PE=2 ... [more]
sp|O48897|TRXF_BRANA2.5e-4757.22Thioredoxin F-type, chloroplastic OS=Brassica napus OX=3708 GN=TRXF PE=2 SV=1[more]
sp|Q9XFH8|TRXF1_ARATH1.2e-4657.07Thioredoxin F1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g02730 PE=1 ... [more]
sp|O81332|TRXF_MESCR3.0e-4555.96Thioredoxin F-type, chloroplastic OS=Mesembryanthemum crystallinum OX=3544 PE=2 ... [more]
Match NameE-valueIdentityDescription
tr|A0A1S3B9B3|A0A1S3B9B3_CUCME6.7e-8285.56thioredoxin F-type, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103487196 P... [more]
tr|A0A0A0M340|A0A0A0M340_CUCSA1.8e-7983.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G651650 PE=4 SV=1[more]
tr|W9S6Z2|W9S6Z2_9ROSA8.0e-5970.27Thioredoxin F-type OS=Morus notabilis OX=981085 GN=L484_015151 PE=4 SV=1[more]
tr|A0A061EZE7|A0A061EZE7_THECC4.4e-5767.74Thioredoxin F-type 1 OS=Theobroma cacao OX=3641 GN=TCM_025160 PE=4 SV=1[more]
tr|A0A0B0NF42|A0A0B0NF42_GOSAR3.7e-5667.04Uncharacterized protein OS=Gossypium arboreum OX=29729 GN=F383_02203 PE=4 SV=1[more]
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006662glycerol ether metabolic process
GO:0045454cell redox homeostasis
Vocabulary: Molecular Function
TermDefinition
GO:0015035protein disulfide oxidoreductase activity
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf
IPR017937Thioredoxin_CS
IPR005746Thioredoxin
IPR013766Thioredoxin_domain
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045454 cell redox homeostasis
biological_process GO:0006662 glycerol ether metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0015035 protein disulfide oxidoreductase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg22709-RACarg22709-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00421THIOREDOXINcoord: 143..154
score: 33.89
coord: 95..103
score: 31.23
coord: 103..112
score: 65.5
NoneNo IPR availableGENE3DG3DSA:3.40.30.10coord: 60..179
e-value: 7.4E-34
score: 118.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availablePANTHERPTHR10438:SF258THIOREDOXIN F1, CHLOROPLASTIC-RELATEDcoord: 30..178
NoneNo IPR availableCDDcd02947TRX_familycoord: 81..175
e-value: 5.3768E-26
score: 95.7028
IPR013766Thioredoxin domainPFAMPF00085Thioredoxincoord: 75..175
e-value: 2.7E-23
score: 81.8
IPR013766Thioredoxin domainPROSITEPS51352THIOREDOXIN_2coord: 3..179
score: 12.621
IPR005746ThioredoxinPANTHERPTHR10438THIOREDOXINcoord: 30..178
IPR017937Thioredoxin, conserved sitePROSITEPS00194THIOREDOXIN_1coord: 96..114
IPR036249Thioredoxin-like superfamilySUPERFAMILYSSF52833Thioredoxin-likecoord: 69..177