Lsi06G003140 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTTCCACTTCTGCAGTTTCAATGGCCTTGCCATTGACTTACGCCAGCCAAAAGCCACTCTCCAACGACGCTTTCTTCAATCCATTGCCTTCTTCTAGGTCTCGCAAGGCCGTTGCTGCTGCTCCGAAATCCAATGGAAGGCTTGTCGCCGTCCGATCGTCGTTGAAGGAGAAGGCTGTCGCTGGAATTACGGCCGCTGCTCTGACGGCGTCGATGGTGATTCCGGAGGTTGCAGAGGCTGCGGGACCTGGAGTGTCGCCGTCGCTGAAGAATTTCTTGCTGAGCATTGCGGCCGGTGGAGCTGTGGTGGTGGCTATATTGGGAGCGGTCATCGGCGTCTCGAATTTCGATCCGGTGAAGCGAAGCTGA ATGGCTTCCACTTCTGCAGTTTCAATGGCCTTGCCATTGACTTACGCCAGCCAAAAGCCACTCTCCAACGACGCTTTCTTCAATCCATTGCCTTCTTCTAGGTCTCGCAAGGCCGTTGCTGCTGCTCCGAAATCCAATGGAAGGCTTGTCGCCGTCCGATCGTCGTTGAAGGAGAAGGCTGTCGCTGGAATTACGGCCGCTGCTCTGACGGCGTCGATGGTGATTCCGGAGGTTGCAGAGGCTGCGGGACCTGGAGTGTCGCCGTCGCTGAAGAATTTCTTGCTGAGCATTGCGGCCGGTGGAGCTGTGGTGGTGGCTATATTGGGAGCGGTCATCGGCGTCTCGAATTTCGATCCGGTGAAGCGAAGCTGA ATGGCTTCCACTTCTGCAGTTTCAATGGCCTTGCCATTGACTTACGCCAGCCAAAAGCCACTCTCCAACGACGCTTTCTTCAATCCATTGCCTTCTTCTAGGTCTCGCAAGGCCGTTGCTGCTGCTCCGAAATCCAATGGAAGGCTTGTCGCCGTCCGATCGTCGTTGAAGGAGAAGGCTGTCGCTGGAATTACGGCCGCTGCTCTGACGGCGTCGATGGTGATTCCGGAGGTTGCAGAGGCTGCGGGACCTGGAGTGTCGCCGTCGCTGAAGAATTTCTTGCTGAGCATTGCGGCCGGTGGAGCTGTGGTGGTGGCTATATTGGGAGCGGTCATCGGCGTCTCGAATTTCGATCCGGTGAAGCGAAGCTGA MASTSAVSMALPLTYASQKPLSNDAFFNPLPSSRSRKAVAAAPKSNGRLVAVRSSLKEKAVAGITAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAGGAVVVAILGAVIGVSNFDPVKRS
BLAST of Lsi06G003140 vs. TrEMBL
Match: A0A0A0LWL3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G595840 PE=4 SV=1) HSP 1 Score: 187.6 bits (475), Expect = 9.2e-45 Identity = 105/123 (85.37%), Postives = 115/123 (93.50%), Query Frame = 1
BLAST of Lsi06G003140 vs. TrEMBL
Match: U5FIS7_POPTR (Membrane family protein OS=Populus trichocarpa GN=POPTR_0018s07160g PE=4 SV=1) HSP 1 Score: 147.9 bits (372), Expect = 8.1e-33 Identity = 89/124 (71.77%), Postives = 103/124 (83.06%), Query Frame = 1
BLAST of Lsi06G003140 vs. TrEMBL
Match: W9QSC1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_027353 PE=4 SV=1) HSP 1 Score: 147.1 bits (370), Expect = 1.4e-32 Identity = 89/124 (71.77%), Postives = 101/124 (81.45%), Query Frame = 1
BLAST of Lsi06G003140 vs. TrEMBL
Match: B9RK19_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1045940 PE=4 SV=1) HSP 1 Score: 147.1 bits (370), Expect = 1.4e-32 Identity = 88/124 (70.97%), Postives = 106/124 (85.48%), Query Frame = 1
BLAST of Lsi06G003140 vs. TrEMBL
Match: A9PE66_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1) HSP 1 Score: 147.1 bits (370), Expect = 1.4e-32 Identity = 92/123 (74.80%), Postives = 106/123 (86.18%), Query Frame = 1
BLAST of Lsi06G003140 vs. TAIR10
Match: AT2G06520.1 (AT2G06520.1 photosystem II subunit X) HSP 1 Score: 111.3 bits (277), Expect = 4.2e-25 Identity = 68/123 (55.28%), Postives = 87/123 (70.73%), Query Frame = 1
BLAST of Lsi06G003140 vs. NCBI nr
Match: gi|659100057|ref|XP_008450907.1| (PREDICTED: uncharacterized protein LOC103492356 [Cucumis melo]) HSP 1 Score: 192.2 bits (487), Expect = 5.4e-46 Identity = 109/123 (88.62%), Postives = 115/123 (93.50%), Query Frame = 1
BLAST of Lsi06G003140 vs. NCBI nr
Match: gi|700211184|gb|KGN66280.1| (hypothetical protein Csa_1G595840 [Cucumis sativus]) HSP 1 Score: 187.6 bits (475), Expect = 1.3e-44 Identity = 105/123 (85.37%), Postives = 115/123 (93.50%), Query Frame = 1
BLAST of Lsi06G003140 vs. NCBI nr
Match: gi|778665326|ref|XP_004144122.2| (PREDICTED: mechanosensitive ion channel protein 10-like [Cucumis sativus]) HSP 1 Score: 187.6 bits (475), Expect = 1.3e-44 Identity = 105/123 (85.37%), Postives = 115/123 (93.50%), Query Frame = 1
BLAST of Lsi06G003140 vs. NCBI nr
Match: gi|720018912|ref|XP_010261944.1| (PREDICTED: uncharacterized protein LOC104600599 [Nelumbo nucifera]) HSP 1 Score: 149.4 bits (376), Expect = 4.0e-33 Identity = 91/125 (72.80%), Postives = 102/125 (81.60%), Query Frame = 1
BLAST of Lsi06G003140 vs. NCBI nr
Match: gi|566214682|ref|XP_006372004.1| (membrane family protein [Populus trichocarpa]) HSP 1 Score: 147.9 bits (372), Expect = 1.2e-32 Identity = 89/124 (71.77%), Postives = 103/124 (83.06%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene: |