Lsi06G003140 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi06G003140
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionChloroplast photosystem II subunit X
Locationchr06 : 3572123 .. 3572494 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCACTTCTGCAGTTTCAATGGCCTTGCCATTGACTTACGCCAGCCAAAAGCCACTCTCCAACGACGCTTTCTTCAATCCATTGCCTTCTTCTAGGTCTCGCAAGGCCGTTGCTGCTGCTCCGAAATCCAATGGAAGGCTTGTCGCCGTCCGATCGTCGTTGAAGGAGAAGGCTGTCGCTGGAATTACGGCCGCTGCTCTGACGGCGTCGATGGTGATTCCGGAGGTTGCAGAGGCTGCGGGACCTGGAGTGTCGCCGTCGCTGAAGAATTTCTTGCTGAGCATTGCGGCCGGTGGAGCTGTGGTGGTGGCTATATTGGGAGCGGTCATCGGCGTCTCGAATTTCGATCCGGTGAAGCGAAGCTGA

mRNA sequence

ATGGCTTCCACTTCTGCAGTTTCAATGGCCTTGCCATTGACTTACGCCAGCCAAAAGCCACTCTCCAACGACGCTTTCTTCAATCCATTGCCTTCTTCTAGGTCTCGCAAGGCCGTTGCTGCTGCTCCGAAATCCAATGGAAGGCTTGTCGCCGTCCGATCGTCGTTGAAGGAGAAGGCTGTCGCTGGAATTACGGCCGCTGCTCTGACGGCGTCGATGGTGATTCCGGAGGTTGCAGAGGCTGCGGGACCTGGAGTGTCGCCGTCGCTGAAGAATTTCTTGCTGAGCATTGCGGCCGGTGGAGCTGTGGTGGTGGCTATATTGGGAGCGGTCATCGGCGTCTCGAATTTCGATCCGGTGAAGCGAAGCTGA

Coding sequence (CDS)

ATGGCTTCCACTTCTGCAGTTTCAATGGCCTTGCCATTGACTTACGCCAGCCAAAAGCCACTCTCCAACGACGCTTTCTTCAATCCATTGCCTTCTTCTAGGTCTCGCAAGGCCGTTGCTGCTGCTCCGAAATCCAATGGAAGGCTTGTCGCCGTCCGATCGTCGTTGAAGGAGAAGGCTGTCGCTGGAATTACGGCCGCTGCTCTGACGGCGTCGATGGTGATTCCGGAGGTTGCAGAGGCTGCGGGACCTGGAGTGTCGCCGTCGCTGAAGAATTTCTTGCTGAGCATTGCGGCCGGTGGAGCTGTGGTGGTGGCTATATTGGGAGCGGTCATCGGCGTCTCGAATTTCGATCCGGTGAAGCGAAGCTGA

Protein sequence

MASTSAVSMALPLTYASQKPLSNDAFFNPLPSSRSRKAVAAAPKSNGRLVAVRSSLKEKAVAGITAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAGGAVVVAILGAVIGVSNFDPVKRS
BLAST of Lsi06G003140 vs. TrEMBL
Match: A0A0A0LWL3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G595840 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 9.2e-45
Identity = 105/123 (85.37%), Postives = 115/123 (93.50%), Query Frame = 1

Query: 1   MASTSAVSMALPLTYASQKPLSNDAFFNPLPSSRSRKAVAAAPKSNGRLVAVRSSLKEKA 60
           MASTSA+SMALP T+A++KPLSNDAFFNPLPS +SRK +A AP SNGR++AVRSS KEKA
Sbjct: 1   MASTSALSMALPFTHATRKPLSNDAFFNPLPSFKSRKPIATAPISNGRILAVRSSFKEKA 60

Query: 61  VAGITAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAGGAVVVAILGAVIGVSNFDPV 120
           VAGI+AAALTASMVIPEVAEAAG GVSPSLKNFLLSIAAGG VVVAILGAVIGV+NFDPV
Sbjct: 61  VAGISAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIAAGGVVVVAILGAVIGVANFDPV 120

Query: 121 KRS 124
           KRS
Sbjct: 121 KRS 123

BLAST of Lsi06G003140 vs. TrEMBL
Match: U5FIS7_POPTR (Membrane family protein OS=Populus trichocarpa GN=POPTR_0018s07160g PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 8.1e-33
Identity = 89/124 (71.77%), Postives = 103/124 (83.06%), Query Frame = 1

Query: 1   MASTSAVSMALPLTYASQKPL-SNDAFFNPLPSSRSRKAVAAAPKSNGRLVAVRSSLKEK 60
           MASTSAVSMA+PLT+AS+K   +++AFF PLP  R  KA+AAA + NGR   V++SLKEK
Sbjct: 1   MASTSAVSMAMPLTHASRKAAPTSEAFFKPLPV-RPSKAIAAASRCNGRF-QVKASLKEK 60

Query: 61  AVAGITAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAGGAVVVAILGAVIGVSNFDP 120
            V G+TA ALT SMVIPEVAEAAGPGVSPSL NFLLSI AGG V+VAI GAV+GVSNFDP
Sbjct: 61  VVTGLTAGALTVSMVIPEVAEAAGPGVSPSLNNFLLSIVAGGVVLVAIAGAVVGVSNFDP 120

Query: 121 VKRS 124
           V+RS
Sbjct: 121 VRRS 122

BLAST of Lsi06G003140 vs. TrEMBL
Match: W9QSC1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_027353 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.4e-32
Identity = 89/124 (71.77%), Postives = 101/124 (81.45%), Query Frame = 1

Query: 1   MASTSAVSMALPLTYASQKPLSN-DAFFNPLPSSRSRKAVAAAPKSNGRLVAVRSSLKEK 60
           MA+TSAVSMA+PLT ASQK   N +AF  PLP  R+ KAV  AP+S G+L  VR+S+KEK
Sbjct: 1   MAATSAVSMAMPLTSASQKKAPNSEAFLRPLPV-RTSKAVTVAPRSTGKL-EVRASMKEK 60

Query: 61  AVAGITAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAGGAVVVAILGAVIGVSNFDP 120
            V G+TA A+TASMVIP+VAEAAGPGVSPSLKNFLLSI AGG V  AI+G VIGVSNFDP
Sbjct: 61  VVTGLTAGAMTASMVIPQVAEAAGPGVSPSLKNFLLSIVAGGVVFAAIVGVVIGVSNFDP 120

Query: 121 VKRS 124
           VKRS
Sbjct: 121 VKRS 122

BLAST of Lsi06G003140 vs. TrEMBL
Match: B9RK19_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1045940 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.4e-32
Identity = 88/124 (70.97%), Postives = 106/124 (85.48%), Query Frame = 1

Query: 1   MASTSAVSMALPLTYASQKPL-SNDAFFNPLPSSRSRKAVAAAPKSNGRLVAVRSSLKEK 60
           MASTSAVSMA+P+T ASQK + S++AFF PLP  +S+  +A+  KSNG+   V++SLKEK
Sbjct: 1   MASTSAVSMAMPITSASQKKVPSSEAFFKPLPLRQSKAVMAS--KSNGKF-QVKASLKEK 60

Query: 61  AVAGITAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAGGAVVVAILGAVIGVSNFDP 120
           A+ G+TAAALTASMVIPEVAEAAG GVSPSLKNFLLSI AGG V+ AI+GA+IGV+NFDP
Sbjct: 61  AITGLTAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIVAGGVVLTAIVGAIIGVANFDP 120

Query: 121 VKRS 124
           VKRS
Sbjct: 121 VKRS 121

BLAST of Lsi06G003140 vs. TrEMBL
Match: A9PE66_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.4e-32
Identity = 92/123 (74.80%), Postives = 106/123 (86.18%), Query Frame = 1

Query: 1   MASTSAVSMALPLTYASQKPL-SNDAFFNPLPSSRSRKAVAAAPKSNGRLVAVRSSLKEK 60
           MASTSAVSMALPLTYASQK + +++AFF PLP+ R  KA++A+ KS+GR   V++SLKEK
Sbjct: 1   MASTSAVSMALPLTYASQKRVPASEAFFKPLPA-RPSKAMSAS-KSSGRF-QVKASLKEK 60

Query: 61  AVAGITAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAGGAVVVAILGAVIGVSNFDP 120
            V G+TA ALTASMVIPEVAEAAG G SPSLKNFLLSI AGG V+VAI+GAVIGVSNFDP
Sbjct: 61  LVTGLTAGALTASMVIPEVAEAAGAGASPSLKNFLLSIVAGGVVLVAIIGAVIGVSNFDP 120

Query: 121 VKR 123
           VKR
Sbjct: 121 VKR 120

BLAST of Lsi06G003140 vs. TAIR10
Match: AT2G06520.1 (AT2G06520.1 photosystem II subunit X)

HSP 1 Score: 111.3 bits (277), Expect = 4.2e-25
Identity = 68/123 (55.28%), Postives = 87/123 (70.73%), Query Frame = 1

Query: 1   MASTSAVSMALPLTYASQKPLSNDAFFNPLPSSRSRKAVAAAPKSNGRLVAVRSSLKEKA 60
           MASTSA+S+  PL      P     F  PLP   S+  VA   ++  + + V++   +KA
Sbjct: 1   MASTSAMSLVTPLNQTRSSP-----FLKPLPLKPSKALVATGGRA--QRLQVKALKMDKA 60

Query: 61  VAGITAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAGGAVVVAILGAVIGVSNFDPV 120
           + GI+AAALTASMVIPE+AEAAG G+SPSLKNFLLSIA+GG V+  I+G V+GVSNFDPV
Sbjct: 61  LTGISAAALTASMVIPEIAEAAGSGISPSLKNFLLSIASGGLVLTVIIGVVVGVSNFDPV 116

Query: 121 KRS 124
           KR+
Sbjct: 121 KRT 116

BLAST of Lsi06G003140 vs. NCBI nr
Match: gi|659100057|ref|XP_008450907.1| (PREDICTED: uncharacterized protein LOC103492356 [Cucumis melo])

HSP 1 Score: 192.2 bits (487), Expect = 5.4e-46
Identity = 109/123 (88.62%), Postives = 115/123 (93.50%), Query Frame = 1

Query: 1   MASTSAVSMALPLTYASQKPLSNDAFFNPLPSSRSRKAVAAAPKSNGRLVAVRSSLKEKA 60
           MASTSAVSMALP T+A+ KPLSNDAFFNPLPS +SRK +AAAP SNGR+VAVRSSLKEKA
Sbjct: 1   MASTSAVSMALPFTHATHKPLSNDAFFNPLPSFKSRKPIAAAPISNGRIVAVRSSLKEKA 60

Query: 61  VAGITAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAGGAVVVAILGAVIGVSNFDPV 120
           VAGITAAAL ASMVIPEVAEAAG GVSPSLKNFLLSIAAGGAVVVAI GAVIGV+NFDPV
Sbjct: 61  VAGITAAALAASMVIPEVAEAAGSGVSPSLKNFLLSIAAGGAVVVAIFGAVIGVANFDPV 120

Query: 121 KRS 124
           KRS
Sbjct: 121 KRS 123

BLAST of Lsi06G003140 vs. NCBI nr
Match: gi|700211184|gb|KGN66280.1| (hypothetical protein Csa_1G595840 [Cucumis sativus])

HSP 1 Score: 187.6 bits (475), Expect = 1.3e-44
Identity = 105/123 (85.37%), Postives = 115/123 (93.50%), Query Frame = 1

Query: 1   MASTSAVSMALPLTYASQKPLSNDAFFNPLPSSRSRKAVAAAPKSNGRLVAVRSSLKEKA 60
           MASTSA+SMALP T+A++KPLSNDAFFNPLPS +SRK +A AP SNGR++AVRSS KEKA
Sbjct: 1   MASTSALSMALPFTHATRKPLSNDAFFNPLPSFKSRKPIATAPISNGRILAVRSSFKEKA 60

Query: 61  VAGITAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAGGAVVVAILGAVIGVSNFDPV 120
           VAGI+AAALTASMVIPEVAEAAG GVSPSLKNFLLSIAAGG VVVAILGAVIGV+NFDPV
Sbjct: 61  VAGISAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIAAGGVVVVAILGAVIGVANFDPV 120

Query: 121 KRS 124
           KRS
Sbjct: 121 KRS 123

BLAST of Lsi06G003140 vs. NCBI nr
Match: gi|778665326|ref|XP_004144122.2| (PREDICTED: mechanosensitive ion channel protein 10-like [Cucumis sativus])

HSP 1 Score: 187.6 bits (475), Expect = 1.3e-44
Identity = 105/123 (85.37%), Postives = 115/123 (93.50%), Query Frame = 1

Query: 1   MASTSAVSMALPLTYASQKPLSNDAFFNPLPSSRSRKAVAAAPKSNGRLVAVRSSLKEKA 60
           MASTSA+SMALP T+A++KPLSNDAFFNPLPS +SRK +A AP SNGR++AVRSS KEKA
Sbjct: 818 MASTSALSMALPFTHATRKPLSNDAFFNPLPSFKSRKPIATAPISNGRILAVRSSFKEKA 877

Query: 61  VAGITAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAGGAVVVAILGAVIGVSNFDPV 120
           VAGI+AAALTASMVIPEVAEAAG GVSPSLKNFLLSIAAGG VVVAILGAVIGV+NFDPV
Sbjct: 878 VAGISAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIAAGGVVVVAILGAVIGVANFDPV 937

Query: 121 KRS 124
           KRS
Sbjct: 938 KRS 940

BLAST of Lsi06G003140 vs. NCBI nr
Match: gi|720018912|ref|XP_010261944.1| (PREDICTED: uncharacterized protein LOC104600599 [Nelumbo nucifera])

HSP 1 Score: 149.4 bits (376), Expect = 4.0e-33
Identity = 91/125 (72.80%), Postives = 102/125 (81.60%), Query Frame = 1

Query: 1   MASTSAVSMALPLTYASQK--PLSNDAFFNPLPSSRSRKAVAAAPKSNGRLVAVRSSLKE 60
           MASTSAVSMA PLT AS K  P S+DAFF PLP   S+   A + ++N +L  VRSSLKE
Sbjct: 1   MASTSAVSMATPLTSASHKRLPPSSDAFFKPLPLRSSKAIEATSSRANAKL-QVRSSLKE 60

Query: 61  KAVAGITAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAGGAVVVAILGAVIGVSNFD 120
           KAV G+TAAALTASMVIPEVAEAAGPG+SPSLKNFLLSI AGG V+  I+GAVIGV+NFD
Sbjct: 61  KAVTGLTAAALTASMVIPEVAEAAGPGISPSLKNFLLSIVAGGVVLGVIVGAVIGVANFD 120

Query: 121 PVKRS 124
           PVKRS
Sbjct: 121 PVKRS 124

BLAST of Lsi06G003140 vs. NCBI nr
Match: gi|566214682|ref|XP_006372004.1| (membrane family protein [Populus trichocarpa])

HSP 1 Score: 147.9 bits (372), Expect = 1.2e-32
Identity = 89/124 (71.77%), Postives = 103/124 (83.06%), Query Frame = 1

Query: 1   MASTSAVSMALPLTYASQKPL-SNDAFFNPLPSSRSRKAVAAAPKSNGRLVAVRSSLKEK 60
           MASTSAVSMA+PLT+AS+K   +++AFF PLP  R  KA+AAA + NGR   V++SLKEK
Sbjct: 1   MASTSAVSMAMPLTHASRKAAPTSEAFFKPLPV-RPSKAIAAASRCNGRF-QVKASLKEK 60

Query: 61  AVAGITAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAGGAVVVAILGAVIGVSNFDP 120
            V G+TA ALT SMVIPEVAEAAGPGVSPSL NFLLSI AGG V+VAI GAV+GVSNFDP
Sbjct: 61  VVTGLTAGALTVSMVIPEVAEAAGPGVSPSLNNFLLSIVAGGVVLVAIAGAVVGVSNFDP 120

Query: 121 VKRS 124
           V+RS
Sbjct: 121 VRRS 122

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LWL3_CUCSA9.2e-4585.37Uncharacterized protein OS=Cucumis sativus GN=Csa_1G595840 PE=4 SV=1[more]
U5FIS7_POPTR8.1e-3371.77Membrane family protein OS=Populus trichocarpa GN=POPTR_0018s07160g PE=4 SV=1[more]
W9QSC1_9ROSA1.4e-3271.77Uncharacterized protein OS=Morus notabilis GN=L484_027353 PE=4 SV=1[more]
B9RK19_RICCO1.4e-3270.97Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1045940 PE=4 SV=1[more]
A9PE66_POPTR1.4e-3274.80Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1[more]
Match NameE-valueIdentityDescription
AT2G06520.14.2e-2555.28 photosystem II subunit X[more]
Match NameE-valueIdentityDescription
gi|659100057|ref|XP_008450907.1|5.4e-4688.62PREDICTED: uncharacterized protein LOC103492356 [Cucumis melo][more]
gi|700211184|gb|KGN66280.1|1.3e-4485.37hypothetical protein Csa_1G595840 [Cucumis sativus][more]
gi|778665326|ref|XP_004144122.2|1.3e-4485.37PREDICTED: mechanosensitive ion channel protein 10-like [Cucumis sativus][more]
gi|720018912|ref|XP_010261944.1|4.0e-3372.80PREDICTED: uncharacterized protein LOC104600599 [Nelumbo nucifera][more]
gi|566214682|ref|XP_006372004.1|1.2e-3271.77membrane family protein [Populus trichocarpa][more]
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0009523photosystem II
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
Vocabulary: INTERPRO
TermDefinition
IPR009518PSII_PsbX
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009523 photosystem II
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G003140.1Lsi06G003140.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009518Photosystem II PsbXPFAMPF06596PsbXcoord: 86..123
score: 7.2
NoneNo IPR availableGENE3DG3DSA:1.20.5.510coord: 75..123
score: 1.3
NoneNo IPR availablePANTHERPTHR34455FAMILY NOT NAMEDcoord: 1..123
score: 6.9
NoneNo IPR availablePANTHERPTHR34455:SF1EXPRESSED PROTEINcoord: 1..123
score: 6.9

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi06G003140Csa1G595840Cucumber (Chinese Long) v2culsiB058
Lsi06G003140Csa2G000260Cucumber (Chinese Long) v2culsiB134
Lsi06G003140CSPI02G00260Wild cucumber (PI 183967)cpilsiB133
Lsi06G003140CSPI01G28540Wild cucumber (PI 183967)cpilsiB059
Lsi06G003140Cucsa.141580Cucumber (Gy14) v1cgylsiB230
Lsi06G003140Cucsa.117230Cucumber (Gy14) v1cgylsiB164
Lsi06G003140CmaCh11G007210Cucurbita maxima (Rimu)cmalsiB128
Lsi06G003140CmoCh11G007350Cucurbita moschata (Rifu)cmolsiB118
Lsi06G003140CmoCh10G007810Cucurbita moschata (Rifu)cmolsiB050
Lsi06G003140Cla011174Watermelon (97103) v1lsiwmB396
Lsi06G003140Cla016851Watermelon (97103) v1lsiwmB411
Lsi06G003140MELO3C015509Melon (DHL92) v3.5.1lsimeB396
Lsi06G003140MELO3C004642Melon (DHL92) v3.5.1lsimeB414
Lsi06G003140ClCG11G001540Watermelon (Charleston Gray)lsiwcgB355
Lsi06G003140ClCG03G015240Watermelon (Charleston Gray)lsiwcgB364
Lsi06G003140MELO3C015509.2Melon (DHL92) v3.6.1lsimedB418
Lsi06G003140MELO3C004642.2Melon (DHL92) v3.6.1lsimedB437
Lsi06G003140Cla97C03G065480Watermelon (97103) v2lsiwmbB365
Lsi06G003140Cla97C11G207920Watermelon (97103) v2lsiwmbB359
Lsi06G003140Bhi02G001527Wax gourdlsiwgoB517
Lsi06G003140Bhi06G001392Wax gourdlsiwgoB478
Lsi06G003140Cp4.1LG04g10880Cucurbita pepo (Zucchini)cpelsiB563
Lsi06G003140Cp4.1LG11g11860Cucurbita pepo (Zucchini)cpelsiB093
Lsi06G003140Carg18638Silver-seed gourdcarlsiB817
Lsi06G003140CsaV3_2G001270Cucumber (Chinese Long) v3cuclsiB145
Lsi06G003140CsaV3_1G040810Cucumber (Chinese Long) v3cuclsiB068
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Lsi06G003140Lsi11G001680Bottle gourd (USVL1VR-Ls)lsilsiB059