Cucsa.141580 (gene) Cucumber (Gy14) v1

NameCucsa.141580
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUltraviolet-B-repressible protein
Locationscaffold01079 : 24441 .. 25501 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCAAGCTACCTAAACCTCCAAACTTAACATTTTTAGGAATAAGTTTCCAAATTTGCACACCGAACGACGAACCTTTAAGGTGTTCGTTACAACCAATAAACATCAAAATAAATAATCACTGATATATTTTGGAAGGCAACCTATTTAGAGGGTAGCGAAGGACACAGAATAAGGTGGAGAGTATAGAGGCCCAAAGGGAAGGCCCAAAGGAAAGGCCCAAAAGTATAAGAAGACCGTACCGGAGGATTTGAAAGGCGATGATGATTGGACCAATAAGATAACCTTATCTACCAATAAAGCATTCAGAAGTTGCCACGTCAGACCAAGATCAAGATTTCAAGCTCACCAACAATCCCCAATTCCCTCCGCTTCTTCTTCACTGGCCCACGCCCTTTTCCCAAAAATCCCCTAATCCCCCAATTCTCATCTTCCCAACAATTTTCCACAAAATCCTCCATTCCCCCAACCTCCCAATTCATCCCATCAATGGCTTCCACTTCCGCTCTTTCAATGGCCTTACCATTCACCCACGCCACCCGCAAGCCACTCTCCAACGACGCTTTCTTCAACCCATTGCCCTCTTTTAAGTCCCGCAAGCCCATCGCCACTGCTCCCATCTCCAACGGAAGGATCCTCGCCGTTCGATCTTCCTTCAAGGAGAAGGCTGTTGCTGGAATCTCTGCTGCTGCTCTCACCGCGTCGATGGTCATTCCAGAGGTTGCCGAGGCTGCCGGATCCGGTGTCTCGCCCTCGTTGAAGAACTTCTTGCTGAGTATTGCGGCAGGTGGAGTGGTGGTGGTGGCGATATTGGGGGCGGTCATCGGCGTCGCCAACTTTGACCCGGTGAAGCGAAGCTGAGCGCAAATGTGAAGTAAAAAGGGGGGAAAAAAAGAAGTAAATTGTAATTTTTGTGTTTTACGTTTATTTAATCGTTGTGTTTGTGGTCATGCTAAATTGCTAATGTATGGATTTTTTAGCTGTAAACTTTTTCCATTCAACTCTAAATTTCTCCATCTCTCTTCATTTATGCCCAAATGAATCTCTATTCAATCACAACATT

mRNA sequence

CTCAAGCTACCTAAACCTCCAAACTTAACATTTTTAGGAATAAGTTTCCAAATTTGCACACCGAACGACGAACCTTTAAGGTGTTCGTTACAACCAATAAACATCAAAATAAATAATCACTGATATATTTTGGAAGGCAACCTATTTAGAGGGTAGCGAAGGACACAGAATAAGGTGGAGAGTATAGAGGCCCAAAGGGAAGGCCCAAAGGAAAGGCCCAAAAGTATAAGAAGACCGTACCGGAGGATTTGAAAGGCGATGATGATTGGACCAATAAGATAACCTTATCTACCAATAAAGCATTCAGAAGTTGCCACGTCAGACCAAGATCAAGATTTCAAGCTCACCAACAATCCCCAATTCCCTCCGCTTCTTCTTCACTGGCCCACGCCCTTTTCCCAAAAATCCCCTAATCCCCCAATTCTCATCTTCCCAACAATTTTCCACAAAATCCTCCATTCCCCCAACCTCCCAATTCATCCCATCAATGGCTTCCACTTCCGCTCTTTCAATGGCCTTACCATTCACCCACGCCACCCGCAAGCCACTCTCCAACGACGCTTTCTTCAACCCATTGCCCTCTTTTAAGTCCCGCAAGCCCATCGCCACTGCTCCCATCTCCAACGGAAGGATCCTCGCCGTTCGATCTTCCTTCAAGGAGAAGGCTGTTGCTGGAATCTCTGCTGCTGCTCTCACCGCGTCGATGGTCATTCCAGAGGTTGCCGAGGCTGCCGGATCCGGTGTCTCGCCCTCGTTGAAGAACTTCTTGCTGAGTATTGCGGCAGGTGGAGTGGTGGTGGTGGCGATATTGGGGGCGGTCATCGGCGTCGCCAACTTTGACCCGGTGAAGCGAAGCTGAGCGCAAATGTGAAGTAAAAAGGGGGGAAAAAAAGAAGTAAATTGTAATTTTTGTGTTTTACGTTTATTTAATCGTTGTGTTTGTGGTCATGCTAAATTGCTAATGTATGGATTTTTTAGCTGTAAACTTTTTCCATTCAACTCTAAATTTCTCCATCTCTCTTCATTTATGCCCAAATGAATCTCTATTCAATCACAACATT

Coding sequence (CDS)

ATGGCTTCCACTTCCGCTCTTTCAATGGCCTTACCATTCACCCACGCCACCCGCAAGCCACTCTCCAACGACGCTTTCTTCAACCCATTGCCCTCTTTTAAGTCCCGCAAGCCCATCGCCACTGCTCCCATCTCCAACGGAAGGATCCTCGCCGTTCGATCTTCCTTCAAGGAGAAGGCTGTTGCTGGAATCTCTGCTGCTGCTCTCACCGCGTCGATGGTCATTCCAGAGGTTGCCGAGGCTGCCGGATCCGGTGTCTCGCCCTCGTTGAAGAACTTCTTGCTGAGTATTGCGGCAGGTGGAGTGGTGGTGGTGGCGATATTGGGGGCGGTCATCGGCGTCGCCAACTTTGACCCGGTGAAGCGAAGCTGA

Protein sequence

MASTSALSMALPFTHATRKPLSNDAFFNPLPSFKSRKPIATAPISNGRILAVRSSFKEKAVAGISAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIAAGGVVVVAILGAVIGVANFDPVKRS*
BLAST of Cucsa.141580 vs. TrEMBL
Match: A0A0A0LWL3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G595840 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 4.3e-58
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1

Query: 1   MASTSALSMALPFTHATRKPLSNDAFFNPLPSFKSRKPIATAPISNGRILAVRSSFKEKA 60
           MASTSALSMALPFTHATRKPLSNDAFFNPLPSFKSRKPIATAPISNGRILAVRSSFKEKA
Sbjct: 1   MASTSALSMALPFTHATRKPLSNDAFFNPLPSFKSRKPIATAPISNGRILAVRSSFKEKA 60

Query: 61  VAGISAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIAAGGVVVVAILGAVIGVANFDPV 120
           VAGISAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIAAGGVVVVAILGAVIGVANFDPV
Sbjct: 61  VAGISAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIAAGGVVVVAILGAVIGVANFDPV 120

Query: 121 KRS 124
           KRS
Sbjct: 121 KRS 123

BLAST of Cucsa.141580 vs. TrEMBL
Match: B9RK19_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1045940 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.9e-34
Identity = 85/124 (68.55%), Postives = 105/124 (84.68%), Query Frame = 1

Query: 1   MASTSALSMALPFTHATRKPL-SNDAFFNPLPSFKSRKPIATAPISNGRILAVRSSFKEK 60
           MASTSA+SMA+P T A++K + S++AFF PLP  +S+  +A+   SNG+   V++S KEK
Sbjct: 1   MASTSAVSMAMPITSASQKKVPSSEAFFKPLPLRQSKAVMASK--SNGKF-QVKASLKEK 60

Query: 61  AVAGISAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIAAGGVVVVAILGAVIGVANFDP 120
           A+ G++AAALTASMVIPEVAEAAGSGVSPSLKNFLLSI AGGVV+ AI+GA+IGVANFDP
Sbjct: 61  AITGLTAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIVAGGVVLTAIVGAIIGVANFDP 120

Query: 121 VKRS 124
           VKRS
Sbjct: 121 VKRS 121

BLAST of Cucsa.141580 vs. TrEMBL
Match: A0A0A0LIL7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000260 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 5.7e-34
Identity = 86/124 (69.35%), Postives = 99/124 (79.84%), Query Frame = 1

Query: 1   MASTSALSMALPFTHATRKPLSN-DAFFNPLPSFKSRKPIATAPISNGRILAVRSSFKEK 60
           MASTSA+SMA+P T+A +K     +AF  PLP   S KP  ++  S+     VR+S KEK
Sbjct: 1   MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKPSGSS--SSSAKFQVRASLKEK 60

Query: 61  AVAGISAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIAAGGVVVVAILGAVIGVANFDP 120
           AVAG++A ALTASMV+PEVAEAAGSGVSPSLKNFLLSIAAGGVVV AILGAVIGVANFDP
Sbjct: 61  AVAGLAATALTASMVLPEVAEAAGSGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDP 120

Query: 121 VKRS 124
           VKR+
Sbjct: 121 VKRT 122

BLAST of Cucsa.141580 vs. TrEMBL
Match: U5FIS7_POPTR (Membrane family protein OS=Populus trichocarpa GN=POPTR_0018s07160g PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 3.7e-33
Identity = 83/124 (66.94%), Postives = 98/124 (79.03%), Query Frame = 1

Query: 1   MASTSALSMALPFTHATRKPL-SNDAFFNPLPSFKSRKPIATAPISNGRILAVRSSFKEK 60
           MASTSA+SMA+P THA+RK   +++AFF PLP  +  K IA A   NGR   V++S KEK
Sbjct: 1   MASTSAVSMAMPLTHASRKAAPTSEAFFKPLP-VRPSKAIAAASRCNGRF-QVKASLKEK 60

Query: 61  AVAGISAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIAAGGVVVVAILGAVIGVANFDP 120
            V G++A ALT SMVIPEVAEAAG GVSPSL NFLLSI AGGVV+VAI GAV+GV+NFDP
Sbjct: 61  VVTGLTAGALTVSMVIPEVAEAAGPGVSPSLNNFLLSIVAGGVVLVAIAGAVVGVSNFDP 120

Query: 121 VKRS 124
           V+RS
Sbjct: 121 VRRS 122

BLAST of Cucsa.141580 vs. TrEMBL
Match: A9PJ43_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.4e-32
Identity = 83/124 (66.94%), Postives = 98/124 (79.03%), Query Frame = 1

Query: 1   MASTSALSMALPFTHATRKPL-SNDAFFNPLPSFKSRKPIATAPISNGRILAVRSSFKEK 60
           MASTSA+SMA+P THA+RK   +++AFF PLP+  S K IA A   N R   V++S KEK
Sbjct: 1   MASTSAVSMAMPLTHASRKAAPTSEAFFKPLPARPS-KAIAAASRCNDRF-QVKASLKEK 60

Query: 61  AVAGISAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIAAGGVVVVAILGAVIGVANFDP 120
            V G++A ALT SMVIPEVAEAAG GVSPSL NFLLSI AGGVV+VAI GAV+GV+NFDP
Sbjct: 61  VVTGLTAGALTVSMVIPEVAEAAGPGVSPSLNNFLLSIVAGGVVLVAIAGAVVGVSNFDP 120

Query: 121 VKRS 124
           V+RS
Sbjct: 121 VRRS 122

BLAST of Cucsa.141580 vs. TAIR10
Match: AT2G06520.1 (AT2G06520.1 photosystem II subunit X)

HSP 1 Score: 125.6 bits (314), Expect = 2.2e-29
Identity = 69/123 (56.10%), Postives = 87/123 (70.73%), Query Frame = 1

Query: 1   MASTSALSMALPFTHATRKPLSNDAFFNPLPSFKSRKPIATAPISNGRILAVRSSFKEKA 60
           MASTSA+S+  P       P     F  PLP   S+  +AT      + L V++   +KA
Sbjct: 1   MASTSAMSLVTPLNQTRSSP-----FLKPLPLKPSKALVATG--GRAQRLQVKALKMDKA 60

Query: 61  VAGISAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIAAGGVVVVAILGAVIGVANFDPV 120
           + GISAAALTASMVIPE+AEAAGSG+SPSLKNFLLSIA+GG+V+  I+G V+GV+NFDPV
Sbjct: 61  LTGISAAALTASMVIPEIAEAAGSGISPSLKNFLLSIASGGLVLTVIIGVVVGVSNFDPV 116

Query: 121 KRS 124
           KR+
Sbjct: 121 KRT 116

BLAST of Cucsa.141580 vs. NCBI nr
Match: gi|700211184|gb|KGN66280.1| (hypothetical protein Csa_1G595840 [Cucumis sativus])

HSP 1 Score: 231.9 bits (590), Expect = 6.2e-58
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1

Query: 1   MASTSALSMALPFTHATRKPLSNDAFFNPLPSFKSRKPIATAPISNGRILAVRSSFKEKA 60
           MASTSALSMALPFTHATRKPLSNDAFFNPLPSFKSRKPIATAPISNGRILAVRSSFKEKA
Sbjct: 1   MASTSALSMALPFTHATRKPLSNDAFFNPLPSFKSRKPIATAPISNGRILAVRSSFKEKA 60

Query: 61  VAGISAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIAAGGVVVVAILGAVIGVANFDPV 120
           VAGISAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIAAGGVVVVAILGAVIGVANFDPV
Sbjct: 61  VAGISAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIAAGGVVVVAILGAVIGVANFDPV 120

Query: 121 KRS 124
           KRS
Sbjct: 121 KRS 123

BLAST of Cucsa.141580 vs. NCBI nr
Match: gi|778665326|ref|XP_004144122.2| (PREDICTED: mechanosensitive ion channel protein 10-like [Cucumis sativus])

HSP 1 Score: 231.9 bits (590), Expect = 6.2e-58
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1

Query: 1   MASTSALSMALPFTHATRKPLSNDAFFNPLPSFKSRKPIATAPISNGRILAVRSSFKEKA 60
           MASTSALSMALPFTHATRKPLSNDAFFNPLPSFKSRKPIATAPISNGRILAVRSSFKEKA
Sbjct: 818 MASTSALSMALPFTHATRKPLSNDAFFNPLPSFKSRKPIATAPISNGRILAVRSSFKEKA 877

Query: 61  VAGISAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIAAGGVVVVAILGAVIGVANFDPV 120
           VAGISAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIAAGGVVVVAILGAVIGVANFDPV
Sbjct: 878 VAGISAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIAAGGVVVVAILGAVIGVANFDPV 937

Query: 121 KRS 124
           KRS
Sbjct: 938 KRS 940

BLAST of Cucsa.141580 vs. NCBI nr
Match: gi|659100057|ref|XP_008450907.1| (PREDICTED: uncharacterized protein LOC103492356 [Cucumis melo])

HSP 1 Score: 217.2 bits (552), Expect = 1.6e-53
Identity = 114/123 (92.68%), Postives = 117/123 (95.12%), Query Frame = 1

Query: 1   MASTSALSMALPFTHATRKPLSNDAFFNPLPSFKSRKPIATAPISNGRILAVRSSFKEKA 60
           MASTSA+SMALPFTHAT KPLSNDAFFNPLPSFKSRKPIA APISNGRI+AVRSS KEKA
Sbjct: 1   MASTSAVSMALPFTHATHKPLSNDAFFNPLPSFKSRKPIAAAPISNGRIVAVRSSLKEKA 60

Query: 61  VAGISAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIAAGGVVVVAILGAVIGVANFDPV 120
           VAGI+AAAL ASMVIPEVAEAAGSGVSPSLKNFLLSIAAGG VVVAI GAVIGVANFDPV
Sbjct: 61  VAGITAAALAASMVIPEVAEAAGSGVSPSLKNFLLSIAAGGAVVVAIFGAVIGVANFDPV 120

Query: 121 KRS 124
           KRS
Sbjct: 121 KRS 123

BLAST of Cucsa.141580 vs. NCBI nr
Match: gi|720018912|ref|XP_010261944.1| (PREDICTED: uncharacterized protein LOC104600599 [Nelumbo nucifera])

HSP 1 Score: 154.1 bits (388), Expect = 1.6e-34
Identity = 88/125 (70.40%), Postives = 100/125 (80.00%), Query Frame = 1

Query: 1   MASTSALSMALPFTHATRK--PLSNDAFFNPLPSFKSRKPIATAPISNGRILAVRSSFKE 60
           MASTSA+SMA P T A+ K  P S+DAFF PLP   S+   AT+  +N + L VRSS KE
Sbjct: 1   MASTSAVSMATPLTSASHKRLPPSSDAFFKPLPLRSSKAIEATSSRANAK-LQVRSSLKE 60

Query: 61  KAVAGISAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIAAGGVVVVAILGAVIGVANFD 120
           KAV G++AAALTASMVIPEVAEAAG G+SPSLKNFLLSI AGGVV+  I+GAVIGVANFD
Sbjct: 61  KAVTGLTAAALTASMVIPEVAEAAGPGISPSLKNFLLSIVAGGVVLGVIVGAVIGVANFD 120

Query: 121 PVKRS 124
           PVKRS
Sbjct: 121 PVKRS 124

BLAST of Cucsa.141580 vs. NCBI nr
Match: gi|255546007|ref|XP_002514063.1| (PREDICTED: uncharacterized protein LOC8268448 [Ricinus communis])

HSP 1 Score: 153.3 bits (386), Expect = 2.8e-34
Identity = 85/124 (68.55%), Postives = 105/124 (84.68%), Query Frame = 1

Query: 1   MASTSALSMALPFTHATRKPL-SNDAFFNPLPSFKSRKPIATAPISNGRILAVRSSFKEK 60
           MASTSA+SMA+P T A++K + S++AFF PLP  +S+  +A+   SNG+   V++S KEK
Sbjct: 1   MASTSAVSMAMPITSASQKKVPSSEAFFKPLPLRQSKAVMASK--SNGKF-QVKASLKEK 60

Query: 61  AVAGISAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIAAGGVVVVAILGAVIGVANFDP 120
           A+ G++AAALTASMVIPEVAEAAGSGVSPSLKNFLLSI AGGVV+ AI+GA+IGVANFDP
Sbjct: 61  AITGLTAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIVAGGVVLTAIVGAIIGVANFDP 120

Query: 121 VKRS 124
           VKRS
Sbjct: 121 VKRS 121

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LWL3_CUCSA4.3e-58100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G595840 PE=4 SV=1[more]
B9RK19_RICCO1.9e-3468.55Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1045940 PE=4 SV=1[more]
A0A0A0LIL7_CUCSA5.7e-3469.35Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000260 PE=4 SV=1[more]
U5FIS7_POPTR3.7e-3366.94Membrane family protein OS=Populus trichocarpa GN=POPTR_0018s07160g PE=4 SV=1[more]
A9PJ43_9ROSI1.4e-3266.94Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2... [more]
Match NameE-valueIdentityDescription
AT2G06520.12.2e-2956.10 photosystem II subunit X[more]
Match NameE-valueIdentityDescription
gi|700211184|gb|KGN66280.1|6.2e-58100.00hypothetical protein Csa_1G595840 [Cucumis sativus][more]
gi|778665326|ref|XP_004144122.2|6.2e-58100.00PREDICTED: mechanosensitive ion channel protein 10-like [Cucumis sativus][more]
gi|659100057|ref|XP_008450907.1|1.6e-5392.68PREDICTED: uncharacterized protein LOC103492356 [Cucumis melo][more]
gi|720018912|ref|XP_010261944.1|1.6e-3470.40PREDICTED: uncharacterized protein LOC104600599 [Nelumbo nucifera][more]
gi|255546007|ref|XP_002514063.1|2.8e-3468.55PREDICTED: uncharacterized protein LOC8268448 [Ricinus communis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009518PSII_PsbX
Vocabulary: Cellular Component
TermDefinition
GO:0009523photosystem II
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009523 photosystem II
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.141580.1Cucsa.141580.1mRNA


Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009518Photosystem II PsbXPFAMPF06596PsbXcoord: 86..123
score: 1.7
NoneNo IPR availableGENE3DG3DSA:1.20.5.510coord: 75..123
score: 1.1
NoneNo IPR availablePANTHERPTHR34455FAMILY NOT NAMEDcoord: 1..123
score: 1.1
NoneNo IPR availablePANTHERPTHR34455:SF1EXPRESSED PROTEINcoord: 1..123
score: 1.1

The following gene(s) are paralogous to this gene:

None