Csa2G000260 (gene) Cucumber (Chinese Long) v2

NameCsa2G000260
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUltraviolet-B-repressible protein; contains IPR009518 (Photosystem II PsbX)
LocationChr2 : 150485 .. 150853 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCAACTTCTGCAATTTCAATGGCTATGCCAATTACTAATGCGGCACAGAAGAGAGCGAGGAGGGCCGAAGCCTTTGCCAAACCATTGCCTTTGAGACCTTCCAACAAGCCAAGTGGCTCCTCAAGCTCCAGCGCCAAGTTCCAAGTGCGGGCTTCTTTGAAGGAGAAGGCTGTCGCTGGACTGGCTGCAACGGCACTCACAGCTTCCATGGTCCTTCCTGAAGTGGCTGAAGCTGCTGGCTCTGGAGTTAGTCCCTCTCTCAAGAATTTCTTGCTCAGCATTGCCGCCGGTGGAGTAGTCGTCACTGCTATCTTGGGTGCAGTTATTGGCGTCGCCAATTTCGATCCCGTCAAGCGGACCTGA

mRNA sequence

ATGGCTTCAACTTCTGCAATTTCAATGGCTATGCCAATTACTAATGCGGCACAGAAGAGAGCGAGGAGGGCCGAAGCCTTTGCCAAACCATTGCCTTTGAGACCTTCCAACAAGCCAAGTGGCTCCTCAAGCTCCAGCGCCAAGTTCCAAGTGCGGGCTTCTTTGAAGGAGAAGGCTGTCGCTGGACTGGCTGCAACGGCACTCACAGCTTCCATGGTCCTTCCTGAAGTGGCTGAAGCTGCTGGCTCTGGAGTTAGTCCCTCTCTCAAGAATTTCTTGCTCAGCATTGCCGCCGGTGGAGTAGTCGTCACTGCTATCTTGGGTGCAGTTATTGGCGTCGCCAATTTCGATCCCGTCAAGCGGACCTGA

Coding sequence (CDS)

ATGGCTTCAACTTCTGCAATTTCAATGGCTATGCCAATTACTAATGCGGCACAGAAGAGAGCGAGGAGGGCCGAAGCCTTTGCCAAACCATTGCCTTTGAGACCTTCCAACAAGCCAAGTGGCTCCTCAAGCTCCAGCGCCAAGTTCCAAGTGCGGGCTTCTTTGAAGGAGAAGGCTGTCGCTGGACTGGCTGCAACGGCACTCACAGCTTCCATGGTCCTTCCTGAAGTGGCTGAAGCTGCTGGCTCTGGAGTTAGTCCCTCTCTCAAGAATTTCTTGCTCAGCATTGCCGCCGGTGGAGTAGTCGTCACTGCTATCTTGGGTGCAGTTATTGGCGTCGCCAATTTCGATCCCGTCAAGCGGACCTGA

Protein sequence

MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGSGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVKRT*
BLAST of Csa2G000260 vs. TrEMBL
Match: A0A0A0LIL7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000260 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 1.8e-56
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 1

Query: 1   MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAV 60
           MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAV
Sbjct: 1   MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAV 60

Query: 61  AGLAATALTASMVLPEVAEAAGSGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK 120
           AGLAATALTASMVLPEVAEAAGSGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK
Sbjct: 61  AGLAATALTASMVLPEVAEAAGSGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK 120

Query: 121 RT 123
           RT
Sbjct: 121 RT 122

BLAST of Csa2G000260 vs. TrEMBL
Match: B9RK19_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1045940 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 8.1e-41
Identity = 93/122 (76.23%), Postives = 107/122 (87.70%), Query Frame = 1

Query: 1   MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAV 60
           MASTSA+SMAMPIT+A+QK+   +EAF KPLPLR S K   +S S+ KFQV+ASLKEKA+
Sbjct: 1   MASTSAVSMAMPITSASQKKVPSSEAFFKPLPLRQS-KAVMASKSNGKFQVKASLKEKAI 60

Query: 61  AGLAATALTASMVLPEVAEAAGSGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK 120
            GL A ALTASMV+PEVAEAAGSGVSPSLKNFLLSI AGGVV+TAI+GA+IGVANFDPVK
Sbjct: 61  TGLTAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIVAGGVVLTAIVGAIIGVANFDPVK 120

Query: 121 RT 123
           R+
Sbjct: 121 RS 121

BLAST of Csa2G000260 vs. TrEMBL
Match: A9PE66_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 9.9e-39
Identity = 89/121 (73.55%), Postives = 102/121 (84.30%), Query Frame = 1

Query: 1   MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAV 60
           MASTSA+SMA+P+T A+QKR   +EAF KPLP RPS K   +S SS +FQV+ASLKEK V
Sbjct: 1   MASTSAVSMALPLTYASQKRVPASEAFFKPLPARPS-KAMSASKSSGRFQVKASLKEKLV 60

Query: 61  AGLAATALTASMVLPEVAEAAGSGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK 120
            GL A ALTASMV+PEVAEAAG+G SPSLKNFLLSI AGGVV+ AI+GAVIGV+NFDPVK
Sbjct: 61  TGLTAGALTASMVIPEVAEAAGAGASPSLKNFLLSIVAGGVVLVAIIGAVIGVSNFDPVK 120

Query: 121 R 122
           R
Sbjct: 121 R 120

BLAST of Csa2G000260 vs. TrEMBL
Match: A9PJ86_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 9.9e-39
Identity = 89/121 (73.55%), Postives = 102/121 (84.30%), Query Frame = 1

Query: 1   MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAV 60
           MASTSA+SMA+P+T A+QKR   +EAF KPLP RPS K   +S SS +FQV+ASLKEK V
Sbjct: 1   MASTSAVSMALPLTYASQKRVPASEAFFKPLPARPS-KAMSASKSSGRFQVKASLKEKLV 60

Query: 61  AGLAATALTASMVLPEVAEAAGSGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK 120
            GL A ALTASMV+PEVAEAAG+G SPSLKNFLLSI AGGVV+ AI+GAVIGV+NFDPVK
Sbjct: 61  TGLTAGALTASMVIPEVAEAAGAGTSPSLKNFLLSIVAGGVVLVAIIGAVIGVSNFDPVK 120

Query: 121 R 122
           R
Sbjct: 121 R 120

BLAST of Csa2G000260 vs. TrEMBL
Match: U5GB08_POPTR (Membrane family protein OS=Populus trichocarpa GN=POPTR_0006s14630g PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 2.2e-38
Identity = 88/121 (72.73%), Postives = 102/121 (84.30%), Query Frame = 1

Query: 1   MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAV 60
           MASTSA+SMA+P+T A+QKR   +EAF KPLP RPS K   +S SS +FQV+ASLKEK V
Sbjct: 1   MASTSAVSMALPLTYASQKRVPASEAFFKPLPARPS-KAMSASKSSGRFQVKASLKEKLV 60

Query: 61  AGLAATALTASMVLPEVAEAAGSGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK 120
            GL A ALTASMV+P+VAEAAG+G SPSLKNFLLSI AGGVV+ AI+GAVIGV+NFDPVK
Sbjct: 61  TGLTAGALTASMVIPDVAEAAGAGASPSLKNFLLSIVAGGVVLVAIIGAVIGVSNFDPVK 120

Query: 121 R 122
           R
Sbjct: 121 R 120

BLAST of Csa2G000260 vs. TAIR10
Match: AT2G06520.1 (AT2G06520.1 photosystem II subunit X)

HSP 1 Score: 136.3 bits (342), Expect = 1.2e-32
Identity = 69/122 (56.56%), Postives = 89/122 (72.95%), Query Frame = 1

Query: 1   MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAV 60
           MASTSA+S+  P+         R+  F KPLPL+PS     +   + + QV+A   +KA+
Sbjct: 1   MASTSAMSLVTPLNQT------RSSPFLKPLPLKPSKALVATGGRAQRLQVKALKMDKAL 60

Query: 61  AGLAATALTASMVLPEVAEAAGSGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK 120
            G++A ALTASMV+PE+AEAAGSG+SPSLKNFLLSIA+GG+V+T I+G V+GV+NFDPVK
Sbjct: 61  TGISAAALTASMVIPEIAEAAGSGISPSLKNFLLSIASGGLVLTVIIGVVVGVSNFDPVK 116

Query: 121 RT 123
           RT
Sbjct: 121 RT 116

BLAST of Csa2G000260 vs. NCBI nr
Match: gi|778665565|ref|XP_011648590.1| (PREDICTED: uncharacterized protein LOC105434533 [Cucumis sativus])

HSP 1 Score: 226.5 bits (576), Expect = 2.6e-56
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 1

Query: 1   MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAV 60
           MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAV
Sbjct: 1   MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAV 60

Query: 61  AGLAATALTASMVLPEVAEAAGSGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK 120
           AGLAATALTASMVLPEVAEAAGSGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK
Sbjct: 61  AGLAATALTASMVLPEVAEAAGSGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK 120

Query: 121 RT 123
           RT
Sbjct: 121 RT 122

BLAST of Csa2G000260 vs. NCBI nr
Match: gi|659071401|ref|XP_008459641.1| (PREDICTED: uncharacterized protein LOC103498700 [Cucumis melo])

HSP 1 Score: 221.1 bits (562), Expect = 1.1e-54
Identity = 119/122 (97.54%), Postives = 119/122 (97.54%), Query Frame = 1

Query: 1   MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAV 60
           MASTSAISM MPITNAAQKR RRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAV
Sbjct: 1   MASTSAISMPMPITNAAQKRTRRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAV 60

Query: 61  AGLAATALTASMVLPEVAEAAGSGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK 120
           AGLAATALTASMVLPEVAEAAG GVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK
Sbjct: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK 120

Query: 121 RT 123
           RT
Sbjct: 121 RT 122

BLAST of Csa2G000260 vs. NCBI nr
Match: gi|255546007|ref|XP_002514063.1| (PREDICTED: uncharacterized protein LOC8268448 [Ricinus communis])

HSP 1 Score: 174.5 bits (441), Expect = 1.2e-40
Identity = 93/122 (76.23%), Postives = 107/122 (87.70%), Query Frame = 1

Query: 1   MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAV 60
           MASTSA+SMAMPIT+A+QK+   +EAF KPLPLR S K   +S S+ KFQV+ASLKEKA+
Sbjct: 1   MASTSAVSMAMPITSASQKKVPSSEAFFKPLPLRQS-KAVMASKSNGKFQVKASLKEKAI 60

Query: 61  AGLAATALTASMVLPEVAEAAGSGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK 120
            GL A ALTASMV+PEVAEAAGSGVSPSLKNFLLSI AGGVV+TAI+GA+IGVANFDPVK
Sbjct: 61  TGLTAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIVAGGVVLTAIVGAIIGVANFDPVK 120

Query: 121 RT 123
           R+
Sbjct: 121 RS 121

BLAST of Csa2G000260 vs. NCBI nr
Match: gi|1009143348|ref|XP_015889216.1| (PREDICTED: mechanosensitive ion channel protein 10-like [Ziziphus jujuba])

HSP 1 Score: 171.8 bits (434), Expect = 7.5e-40
Identity = 89/122 (72.95%), Postives = 103/122 (84.43%), Query Frame = 1

Query: 1   MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAV 60
           MA+TSA+SMAMP+TNA Q+R   +EAF KPLP++PS   + S SSS + QVRASLKEKAV
Sbjct: 802 MATTSAVSMAMPLTNATQRRVPSSEAFLKPLPVKPSKALAVSKSSSGRLQVRASLKEKAV 861

Query: 61  AGLAATALTASMVLPEVAEAAGSGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK 120
            GL A ALTASMV+P+VAEAA SGV+PSLKNFLLSI AGGVV  AI+GAVIGV+NFDPVK
Sbjct: 862 TGLTAAALTASMVIPQVAEAADSGVTPSLKNFLLSIVAGGVVAVAIVGAVIGVSNFDPVK 921

Query: 121 RT 123
           RT
Sbjct: 922 RT 923

BLAST of Csa2G000260 vs. NCBI nr
Match: gi|118489268|gb|ABK96439.1| (unknown [Populus trichocarpa x Populus deltoides])

HSP 1 Score: 167.5 bits (423), Expect = 1.4e-38
Identity = 89/121 (73.55%), Postives = 102/121 (84.30%), Query Frame = 1

Query: 1   MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAV 60
           MASTSA+SMA+P+T A+QKR   +EAF KPLP RPS K   +S SS +FQV+ASLKEK V
Sbjct: 1   MASTSAVSMALPLTYASQKRVPASEAFFKPLPARPS-KAMSASKSSGRFQVKASLKEKLV 60

Query: 61  AGLAATALTASMVLPEVAEAAGSGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK 120
            GL A ALTASMV+PEVAEAAG+G SPSLKNFLLSI AGGVV+ AI+GAVIGV+NFDPVK
Sbjct: 61  TGLTAGALTASMVIPEVAEAAGAGTSPSLKNFLLSIVAGGVVLVAIIGAVIGVSNFDPVK 120

Query: 121 R 122
           R
Sbjct: 121 R 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LIL7_CUCSA1.8e-56100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000260 PE=4 SV=1[more]
B9RK19_RICCO8.1e-4176.23Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1045940 PE=4 SV=1[more]
A9PE66_POPTR9.9e-3973.55Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1[more]
A9PJ86_9ROSI9.9e-3973.55Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2... [more]
U5GB08_POPTR2.2e-3872.73Membrane family protein OS=Populus trichocarpa GN=POPTR_0006s14630g PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G06520.11.2e-3256.56 photosystem II subunit X[more]
Match NameE-valueIdentityDescription
gi|778665565|ref|XP_011648590.1|2.6e-56100.00PREDICTED: uncharacterized protein LOC105434533 [Cucumis sativus][more]
gi|659071401|ref|XP_008459641.1|1.1e-5497.54PREDICTED: uncharacterized protein LOC103498700 [Cucumis melo][more]
gi|255546007|ref|XP_002514063.1|1.2e-4076.23PREDICTED: uncharacterized protein LOC8268448 [Ricinus communis][more]
gi|1009143348|ref|XP_015889216.1|7.5e-4072.95PREDICTED: mechanosensitive ion channel protein 10-like [Ziziphus jujuba][more]
gi|118489268|gb|ABK96439.1|1.4e-3873.55unknown [Populus trichocarpa x Populus deltoides][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009518PSII_PsbX
Vocabulary: Cellular Component
TermDefinition
GO:0009523photosystem II
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
biological_process GO:0055085 transmembrane transport
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009523 photosystem II
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU106199cucumber EST collection version 3.0transcribed_cluster
CU146034cucumber EST collection version 3.0transcribed_cluster
CU150904cucumber EST collection version 3.0transcribed_cluster
CU153441cucumber EST collection version 3.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G000260.1Csa2G000260.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU106199CU106199transcribed_cluster
CU153441CU153441transcribed_cluster
CU150904CU150904transcribed_cluster
CU146034CU146034transcribed_cluster


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009518Photosystem II PsbXPFAMPF06596PsbXcoord: 85..122
score: 1.4
NoneNo IPR availableGENE3DG3DSA:1.20.5.510coord: 75..121
score: 2.1
NoneNo IPR availablePANTHERPTHR34455FAMILY NOT NAMEDcoord: 1..122
score: 8.1
NoneNo IPR availablePANTHERPTHR34455:SF1EXPRESSED PROTEINcoord: 1..122
score: 8.1

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa2G000260Cla016851Watermelon (97103) v1cuwmB162
Csa2G000260Cla011174Watermelon (97103) v1cuwmB114
Csa2G000260MELO3C004642Melon (DHL92) v3.5.1cumeB140
Csa2G000260MELO3C015509Melon (DHL92) v3.5.1cumeB110
Csa2G000260ClCG03G015240Watermelon (Charleston Gray)cuwcgB134
Csa2G000260ClCG11G001540Watermelon (Charleston Gray)cuwcgB096
Csa2G000260Lsi11G001680Bottle gourd (USVL1VR-Ls)culsiB098
Csa2G000260Lsi06G003140Bottle gourd (USVL1VR-Ls)culsiB134
Csa2G000260MELO3C015509.2Melon (DHL92) v3.6.1cumedB110
Csa2G000260MELO3C004642.2Melon (DHL92) v3.6.1cumedB133
Csa2G000260Cla97C11G207920Watermelon (97103) v2cuwmbB103
Csa2G000260Cla97C03G065480Watermelon (97103) v2cuwmbB130
Csa2G000260Bhi02G001527Wax gourdcuwgoB211
Csa2G000260Bhi06G001392Wax gourdcuwgoB129
Csa2G000260CSPI01G28540Wild cucumber (PI 183967)cpicuB020
Csa2G000260CSPI02G00260Wild cucumber (PI 183967)cpicuB065
Csa2G000260Cucsa.141580Cucumber (Gy14) v1cgycuB206
Csa2G000260Cucsa.117230Cucumber (Gy14) v1cgycuB150
Csa2G000260CmaCh11G007210Cucurbita maxima (Rimu)cmacuB119
Csa2G000260CmaCh05G014100Cucurbita maxima (Rimu)cmacuB791
Csa2G000260CmaCh10G007520Cucurbita maxima (Rimu)cmacuB075
Csa2G000260CmoCh10G007810Cucurbita moschata (Rifu)cmocuB065
Csa2G000260CmoCh11G007350Cucurbita moschata (Rifu)cmocuB105
Csa2G000260Cp4.1LG04g10880Cucurbita pepo (Zucchini)cpecuB662
Csa2G000260Cp4.1LG11g11860Cucurbita pepo (Zucchini)cpecuB102
Csa2G000260Carg12970Silver-seed gourdcarcuB0102
Csa2G000260Carg18638Silver-seed gourdcarcuB0910
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Csa2G000260Csa1G595840Cucumber (Chinese Long) v2cucuB010