Carg18638 (gene) Silver-seed gourd

NameCarg18638
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionPhotosystem II PsbX
LocationCucurbita_argyrosperma_scaffold_147 : 302781 .. 303152 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCAACTTCCGCAGTTTCAATGGCTATGCCAATTACTAATGCGACCCAGAAGAGAGTGAGGAGCACCGAGGCCTTCGCTAAGGCATTGCCTTTGAGGCCTTCCAACAAGCCAATTGCTGCATCAAAATCCAGCAGCGCCAAGTTCCAAGTGCGGGCTTCTTTGAAGGAGAAGGCAATTGCTGGATTGGCTGCAACTGCACTGACGGCCTCCATGGTGCTTCCTGAGGTGGCTGAAGCTGCAGGAGCTGGAGTTACCCCTTCTCTCAAGAATTTCTTGCTCAGTATTGCCGCCGGTGGAGTAGTTGTCACTGCTATCTTGGGTGCAATTATCGGTGTCTCCAATTTCGACCCCGTAAAGCGGACCTGA

mRNA sequence

ATGGCTTCAACTTCCGCAGTTTCAATGGCTATGCCAATTACTAATGCGACCCAGAAGAGAGTGAGGAGCACCGAGGCCTTCGCTAAGGCATTGCCTTTGAGGCCTTCCAACAAGCCAATTGCTGCATCAAAATCCAGCAGCGCCAAGTTCCAAGTGCGGGCTTCTTTGAAGGAGAAGGCAATTGCTGGATTGGCTGCAACTGCACTGACGGCCTCCATGGTGCTTCCTGAGGTGGCTGAAGCTGCAGGAGCTGGAGTTACCCCTTCTCTCAAGAATTTCTTGCTCAGTATTGCCGCCGGTGGAGTAGTTGTCACTGCTATCTTGGGTGCAATTATCGGTGTCTCCAATTTCGACCCCGTAAAGCGGACCTGA

Coding sequence (CDS)

ATGGCTTCAACTTCCGCAGTTTCAATGGCTATGCCAATTACTAATGCGACCCAGAAGAGAGTGAGGAGCACCGAGGCCTTCGCTAAGGCATTGCCTTTGAGGCCTTCCAACAAGCCAATTGCTGCATCAAAATCCAGCAGCGCCAAGTTCCAAGTGCGGGCTTCTTTGAAGGAGAAGGCAATTGCTGGATTGGCTGCAACTGCACTGACGGCCTCCATGGTGCTTCCTGAGGTGGCTGAAGCTGCAGGAGCTGGAGTTACCCCTTCTCTCAAGAATTTCTTGCTCAGTATTGCCGCCGGTGGAGTAGTTGTCACTGCTATCTTGGGTGCAATTATCGGTGTCTCCAATTTCGACCCCGTAAAGCGGACCTGA

Protein sequence

MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKAIAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPVKRT
BLAST of Carg18638 vs. NCBI nr
Match: XP_023537653.1 (uncharacterized protein LOC111798628 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 211.5 bits (537), Expect = 1.7e-51
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0

Query: 1   MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKA 60
           MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKA
Sbjct: 1   MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKA 60

Query: 61  IAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPV 120
           IAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPV
Sbjct: 61  IAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPV 120

Query: 121 KRT 124
           KRT
Sbjct: 121 KRT 123

BLAST of Carg18638 vs. NCBI nr
Match: XP_022938093.1 (uncharacterized protein LOC111444282 [Cucurbita moschata])

HSP 1 Score: 210.3 bits (534), Expect = 3.7e-51
Identity = 122/123 (99.19%), Postives = 123/123 (100.00%), Query Frame = 0

Query: 1   MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKA 60
           MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRAS+KEKA
Sbjct: 1   MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASVKEKA 60

Query: 61  IAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPV 120
           IAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPV
Sbjct: 61  IAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPV 120

Query: 121 KRT 124
           KRT
Sbjct: 121 KRT 123

BLAST of Carg18638 vs. NCBI nr
Match: XP_022965530.1 (uncharacterized protein LOC111465405 [Cucurbita maxima])

HSP 1 Score: 209.9 bits (533), Expect = 4.8e-51
Identity = 122/123 (99.19%), Postives = 123/123 (100.00%), Query Frame = 0

Query: 1   MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKA 60
           MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQV+ASLKEKA
Sbjct: 1   MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVQASLKEKA 60

Query: 61  IAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPV 120
           IAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPV
Sbjct: 61  IAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPV 120

Query: 121 KRT 124
           KRT
Sbjct: 121 KRT 123

BLAST of Carg18638 vs. NCBI nr
Match: XP_022946746.1 (uncharacterized protein LOC111450721 [Cucurbita moschata])

HSP 1 Score: 192.2 bits (487), Expect = 1.0e-45
Identity = 113/123 (91.87%), Postives = 117/123 (95.12%), Query Frame = 0

Query: 1   MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKA 60
           MASTSAVSMAMPITNATQKR RST+AFAKALPLRPSNKP  AS +S AKFQVRASLKEKA
Sbjct: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKP-TASSNSRAKFQVRASLKEKA 60

Query: 61  IAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPV 120
           +AGLAATALTASMVLPEVAEAAG GV+PSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPV
Sbjct: 61  VAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPV 120

Query: 121 KRT 124
           KRT
Sbjct: 121 KRT 122

BLAST of Carg18638 vs. NCBI nr
Match: XP_022999231.1 (uncharacterized protein LOC111493667 [Cucurbita maxima] >XP_023522826.1 uncharacterized protein LOC111786846 [Cucurbita pepo subsp. pepo] >XP_023546323.1 uncharacterized protein LOC111805446 [Cucurbita pepo subsp. pepo] >XP_023546324.1 uncharacterized protein LOC111805448 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 190.3 bits (482), Expect = 4.0e-45
Identity = 112/123 (91.06%), Postives = 116/123 (94.31%), Query Frame = 0

Query: 1   MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKA 60
           MASTSAVSMAMPITNATQKR RST+AFAKALPLRPSNKP  AS +S AKFQVRASLKEKA
Sbjct: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKP-TASSNSRAKFQVRASLKEKA 60

Query: 61  IAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPV 120
           +AGLAATALTASMVLPEVAEAAG GV+PSLKNFLLSIAAGGVVV AILGAIIGVSNFDPV
Sbjct: 61  VAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPV 120

Query: 121 KRT 124
           KRT
Sbjct: 121 KRT 122

BLAST of Carg18638 vs. TAIR10
Match: AT2G06520.1 (photosystem II subunit X)

HSP 1 Score: 115.9 bits (289), Expect = 1.7e-26
Identity = 69/123 (56.10%), Postives = 95/123 (77.24%), Query Frame = 0

Query: 1   MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKA 60
           MASTSA+S+  P+ N T+     +  F K LPL+PS K + A+   + + QV+A   +KA
Sbjct: 1   MASTSAMSLVTPL-NQTR-----SSPFLKPLPLKPS-KALVATGGRAQRLQVKALKMDKA 60

Query: 61  IAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPV 120
           + G++A ALTASMV+PE+AEAAG+G++PSLKNFLLSIA+GG+V+T I+G ++GVSNFDPV
Sbjct: 61  LTGISAAALTASMVIPEIAEAAGSGISPSLKNFLLSIASGGLVLTVIIGVVVGVSNFDPV 116

Query: 121 KRT 124
           KRT
Sbjct: 121 KRT 116

BLAST of Carg18638 vs. TrEMBL
Match: tr|A0A0A0LIL7|A0A0A0LIL7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000260 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 3.8e-44
Identity = 108/123 (87.80%), Postives = 115/123 (93.50%), Query Frame = 0

Query: 1   MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKA 60
           MASTSA+SMAMPITNA QKR R  EAFAK LPLRPSNKP + S SSSAKFQVRASLKEKA
Sbjct: 1   MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKP-SGSSSSSAKFQVRASLKEKA 60

Query: 61  IAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPV 120
           +AGLAATALTASMVLPEVAEAAG+GV+PSLKNFLLSIAAGGVVVTAILGA+IGV+NFDPV
Sbjct: 61  VAGLAATALTASMVLPEVAEAAGSGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPV 120

Query: 121 KRT 124
           KRT
Sbjct: 121 KRT 122

BLAST of Carg18638 vs. TrEMBL
Match: tr|A0A1S3CAS0|A0A1S3CAS0_CUCME (uncharacterized protein LOC103498700 OS=Cucumis melo OX=3656 GN=LOC103498700 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 2.5e-43
Identity = 107/123 (86.99%), Postives = 113/123 (91.87%), Query Frame = 0

Query: 1   MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKA 60
           MASTSA+SM MPITNA QKR R  EAFAK LPLRPSNKP + S SSSAKFQVRASLKEKA
Sbjct: 1   MASTSAISMPMPITNAAQKRTRRAEAFAKPLPLRPSNKP-SGSSSSSAKFQVRASLKEKA 60

Query: 61  IAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPV 120
           +AGLAATALTASMVLPEVAEAAG GV+PSLKNFLLSIAAGGVVVTAILGA+IGV+NFDPV
Sbjct: 61  VAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPV 120

Query: 121 KRT 124
           KRT
Sbjct: 121 KRT 122

BLAST of Carg18638 vs. TrEMBL
Match: tr|A0A2P5BGZ9|A0A2P5BGZ9_9ROSA (Photosystem II PsbX OS=Trema orientalis OX=63057 GN=TorRG33x02_321400 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 8.5e-36
Identity = 90/123 (73.17%), Postives = 110/123 (89.43%), Query Frame = 0

Query: 1   MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKA 60
           MA+TSAVSMA+P+TNA+QKRV S+EAF K LP+RPS K ++A+  SS K +VRASLKEKA
Sbjct: 1   MAATSAVSMALPLTNASQKRVPSSEAFLKPLPVRPS-KALSAAPRSSGKLEVRASLKEKA 60

Query: 61  IAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPV 120
           + G+AA A+TASMV+P+VAEAAG GV+PSLKNFLLSI AGGVVVTAI+GA+IGV+NFDPV
Sbjct: 61  VTGIAAAAMTASMVIPQVAEAAGPGVSPSLKNFLLSIVAGGVVVTAIVGAVIGVANFDPV 120

Query: 121 KRT 124
           KR+
Sbjct: 121 KRS 122

BLAST of Carg18638 vs. TrEMBL
Match: tr|B9RK19|B9RK19_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1045940 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.4e-35
Identity = 96/123 (78.05%), Postives = 110/123 (89.43%), Query Frame = 0

Query: 1   MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKA 60
           MASTSAVSMAMPIT+A+QK+V S+EAF K LPLR S K + ASK S+ KFQV+ASLKEKA
Sbjct: 1   MASTSAVSMAMPITSASQKKVPSSEAFFKPLPLRQS-KAVMASK-SNGKFQVKASLKEKA 60

Query: 61  IAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPV 120
           I GL A ALTASMV+PEVAEAAG+GV+PSLKNFLLSI AGGVV+TAI+GAIIGV+NFDPV
Sbjct: 61  ITGLTAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIVAGGVVLTAIVGAIIGVANFDPV 120

Query: 121 KRT 124
           KR+
Sbjct: 121 KRS 121

BLAST of Carg18638 vs. TrEMBL
Match: tr|A0A2P5C1D0|A0A2P5C1D0_PARAD (Photosystem II PsbX OS=Parasponia andersonii OX=3476 GN=PanWU01x14_192230 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 5.5e-35
Identity = 88/123 (71.54%), Postives = 109/123 (88.62%), Query Frame = 0

Query: 1   MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKA 60
           MA+TSAVSMA+P+TNA+QKRV S++AF K LP+RPS K ++A+  SS K +VRASLKEKA
Sbjct: 1   MAATSAVSMALPLTNASQKRVPSSDAFLKPLPVRPS-KALSAAPRSSGKLEVRASLKEKA 60

Query: 61  IAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPV 120
           + G+ A A+TASMV+P+VAEAAG GV+PSLKNFLLSI AGGVVVTAI+GA+IGV+NFDPV
Sbjct: 61  VTGITAAAMTASMVIPQVAEAAGPGVSPSLKNFLLSIVAGGVVVTAIVGAVIGVANFDPV 120

Query: 121 KRT 124
           KR+
Sbjct: 121 KRS 122

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023537653.11.7e-51100.00uncharacterized protein LOC111798628 [Cucurbita pepo subsp. pepo][more]
XP_022938093.13.7e-5199.19uncharacterized protein LOC111444282 [Cucurbita moschata][more]
XP_022965530.14.8e-5199.19uncharacterized protein LOC111465405 [Cucurbita maxima][more]
XP_022946746.11.0e-4591.87uncharacterized protein LOC111450721 [Cucurbita moschata][more]
XP_022999231.14.0e-4591.06uncharacterized protein LOC111493667 [Cucurbita maxima] >XP_023522826.1 uncharac... [more]
Match NameE-valueIdentityDescription
AT2G06520.11.7e-2656.10photosystem II subunit X[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0LIL7|A0A0A0LIL7_CUCSA3.8e-4487.80Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000260 PE=4 SV=1[more]
tr|A0A1S3CAS0|A0A1S3CAS0_CUCME2.5e-4386.99uncharacterized protein LOC103498700 OS=Cucumis melo OX=3656 GN=LOC103498700 PE=... [more]
tr|A0A2P5BGZ9|A0A2P5BGZ9_9ROSA8.5e-3673.17Photosystem II PsbX OS=Trema orientalis OX=63057 GN=TorRG33x02_321400 PE=4 SV=1[more]
tr|B9RK19|B9RK19_RICCO1.4e-3578.05Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1045940 PE=4 SV=1[more]
tr|A0A2P5C1D0|A0A2P5C1D0_PARAD5.5e-3571.54Photosystem II PsbX OS=Parasponia andersonii OX=3476 GN=PanWU01x14_192230 PE=4 S... [more]
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0009523photosystem II
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
Vocabulary: INTERPRO
TermDefinition
IPR009518PSII_PsbX
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
cellular_component GO:0009523 photosystem II
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18638-RACarg18638-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:1.20.5.510coord: 85..123
e-value: 2.8E-10
score: 41.9
NoneNo IPR availablePANTHERPTHR34455FAMILY NOT NAMEDcoord: 1..123
IPR009518Photosystem II PsbXPFAMPF06596PsbXcoord: 86..123
e-value: 1.1E-17
score: 63.6

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg18638Silver-seed gourdcarcarB108
Carg18638Silver-seed gourdcarcarB527
Carg18638Silver-seed gourdcarcarB528
Carg18638Silver-seed gourdcarcarB526
Carg18638Cucumber (Gy14) v2carcgybB0881
Carg18638Cucumber (Gy14) v2carcgybB0882
Carg18638Cucumber (Gy14) v2carcgybB0883
Carg18638Cucumber (Gy14) v1carcgyB1014
Carg18638Cucumber (Gy14) v1carcgyB1016
Carg18638Cucurbita maxima (Rimu)carcmaB1234
Carg18638Cucurbita maxima (Rimu)carcmaB1235
Carg18638Cucurbita maxima (Rimu)carcmaB1236
Carg18638Cucurbita moschata (Rifu)carcmoB1205
Carg18638Cucurbita moschata (Rifu)carcmoB1206
Carg18638Cucurbita moschata (Rifu)carcmoB1207
Carg18638Cucurbita moschata (Rifu)carcmoB1208
Carg18638Cucurbita pepo (Zucchini)carcpeB1245
Carg18638Cucurbita pepo (Zucchini)carcpeB1246
Carg18638Cucurbita pepo (Zucchini)carcpeB1248
Carg18638Wild cucumber (PI 183967)carcpiB0929
Carg18638Wild cucumber (PI 183967)carcpiB0931
Carg18638Cucumber (Chinese Long) v2carcuB0909
Carg18638Cucumber (Chinese Long) v2carcuB0911
Carg18638Cucumber (Chinese Long) v3carcucB0932
Carg18638Cucumber (Chinese Long) v3carcucB0934
Carg18638Bottle gourd (USVL1VR-Ls)carlsiB812
Carg18638Melon (DHL92) v3.5.1carmeB0882
Carg18638Melon (DHL92) v3.5.1carmeB0883
Carg18638Melon (DHL92) v3.5.1carmeB0885
Carg18638Melon (DHL92) v3.6.1carmedB0890
Carg18638Melon (DHL92) v3.6.1carmedB0891
Carg18638Melon (DHL92) v3.6.1carmedB0893
Carg18638Watermelon (Charleston Gray)carwcgB0870
Carg18638Watermelon (Charleston Gray)carwcgB0875
Carg18638Watermelon (97103) v1carwmB0897
Carg18638Watermelon (97103) v1carwmB0898
Carg18638Watermelon (97103) v1carwmB0900
Carg18638Watermelon (97103) v2carwmbB0933
Carg18638Watermelon (97103) v2carwmbB0938
Carg18638Watermelon (97103) v2carwmbB0940
Carg18638Wax gourdcarwgoB1041