Lsi06G000250 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G000250
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	BnaC09g03510D protein
Location	chr06 : 249967 .. 250272 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGGAAACAGGCAGAAAAAATCCCATTCTTCTTCATTTTCTTTCTTGGGGCTGTTCAAATCAAAAAGAGGCAGAAAAGATCAAGATCATCATTACTACGAGCAACAGCAAGGCAGCAGCTGGGAGGACTTCTCATGCCCTAGCAAGGTGTGGCCGAGCGATGCTGATAAATGCCACCGTTGGGTGGCTGAACCCGGCATCGATCGAAAAGCCAAAGATTACATCGACAGGATCCATCGTAACCGCGTCTTTGAAACCCAACGCCAAACCGTCACCCTTCCTCCTAATAATTCCGACCGTTAA

mRNA sequence

ATGGGAGGAAACAGGCAGAAAAAATCCCATTCTTCTTCATTTTCTTTCTTGGGGCTGTTCAAATCAAAAAGAGGCAGAAAAGATCAAGATCATCATTACTACGAGCAACAGCAAGGCAGCAGCTGGGAGGACTTCTCATGCCCTAGCAAGGTGTGGCCGAGCGATGCTGATAAATGCCACCGTTGGGTGGCTGAACCCGGCATCGATCGAAAAGCCAAAGATTACATCGACAGGATCCATCGTAACCGCGTCTTTGAAACCCAACGCCAAACCGTCACCCTTCCTCCTAATAATTCCGACCGTTAA

Coding sequence (CDS)

ATGGGAGGAAACAGGCAGAAAAAATCCCATTCTTCTTCATTTTCTTTCTTGGGGCTGTTCAAATCAAAAAGAGGCAGAAAAGATCAAGATCATCATTACTACGAGCAACAGCAAGGCAGCAGCTGGGAGGACTTCTCATGCCCTAGCAAGGTGTGGCCGAGCGATGCTGATAAATGCCACCGTTGGGTGGCTGAACCCGGCATCGATCGAAAAGCCAAAGATTACATCGACAGGATCCATCGTAACCGCGTCTTTGAAACCCAACGCCAAACCGTCACCCTTCCTCCTAATAATTCCGACCGTTAA

Protein sequence

MGGNRQKKSHSSSFSFLGLFKSKRGRKDQDHHYYEQQQGSSWEDFSCPSKVWPSDADKCHRWVAEPGIDRKAKDYIDRIHRNRVFETQRQTVTLPPNNSDR

Homology

[Close]

BLAST of Lsi06G000250 vs. TrEMBL
Match: A0A0A0LY99_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560730 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 7.1e-43
Identity = 85/98 (86.73%), Postives = 90/98 (91.84%), Query Frame = 1


Query: 1  MGGNRQKKSHSSSFSFLGLFKSKRGRKDQDHHYYEQQQGSSWEDFSCPSKVWPSDADKCH 60
          MGGNRQKKSH+SSFSFLGLFKSKR  +  DH+Y  QQQG+SWEDFSCPSKVWPSDADKCH
Sbjct: 1  MGGNRQKKSHNSSFSFLGLFKSKRSVRKGDHYYDHQQQGNSWEDFSCPSKVWPSDADKCH 60

Query: 61 RWVAEPGIDRKAKDYIDRIHRNRVFETQRQTVTLPPNN 99
          RWVAEPGIDRKAKDYIDRIHRNRVFET RQTVTLPP +
Sbjct: 61 RWVAEPGIDRKAKDYIDRIHRNRVFETPRQTVTLPPES 98

[Close]

BLAST of Lsi06G000250 vs. TrEMBL
Match: A0A0A0K7Y2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014900 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 4.6e-26
Identity = 66/100 (66.00%), Postives = 75/100 (75.00%), Query Frame = 1


Query: 1   MGGNRQKKSHSSSFSFLGLFKSKRGRKDQDHHYYEQQQGSSWED-FSCPSKVWPSDADKC 60
           MGGNRQKKSHSS FS    FKSKRGRK  DH+      G +W D     +KVWPSD DK 
Sbjct: 1   MGGNRQKKSHSS-FSIFSFFKSKRGRKG-DHY----DHGGAWPDEMPRSNKVWPSDEDKA 60

Query: 61  HRWVAEPGIDRKAKDYIDRIHRNRVFETQRQTVTLPPNNS 100
           H W+AEPGIDRKAKDYIDRI+RNRVFE++RQTVT+ PN +
Sbjct: 61  HHWIAEPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGT 94

[Close]

BLAST of Lsi06G000250 vs. TrEMBL
Match: A0A0A0KBW1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014870 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.0e-25
Identity = 65/100 (65.00%), Postives = 76/100 (76.00%), Query Frame = 1


Query: 1   MGGNRQKKSHSSSFSFLGLFKSKRGRKDQDHHYYEQQQGSSW-EDFSCPSKVWPSDADKC 60
           MGGNRQKKSHSS FS    FKS+RGRK  DH+      G +W ++    +KVWPSD DK 
Sbjct: 1   MGGNRQKKSHSS-FSIFSFFKSRRGRKG-DHY----DHGGAWLDEMPRSNKVWPSDEDKA 60

Query: 61  HRWVAEPGIDRKAKDYIDRIHRNRVFETQRQTVTLPPNNS 100
           H WVAEPGIDRKAKDYIDRI+RNRVFE++RQTVT+ PN +
Sbjct: 61  HHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGT 94

[Close]

BLAST of Lsi06G000250 vs. TrEMBL
Match: A0A0A0K8W0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016905 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.0e-25
Identity = 63/96 (65.62%), Postives = 74/96 (77.08%), Query Frame = 1


Query: 2  GGNRQKKSHSSSFSFLGLFKSKRGRKDQDHHYYEQQQGSSWEDFSCPSKVWPSDADKCHR 61
          G +RQKK+HSS FS    FKSKRGRK   + +     G++WED    SKVWPSD DK +R
Sbjct: 3  GSHRQKKTHSS-FSIFSFFKSKRGRKGDVYEH-----GTNWEDVPSSSKVWPSDEDKGYR 62

Query: 62 WVAEPGIDRKAKDYIDRIHRNRVFETQRQTVTLPPN 98
          WVAEPGIDRKAKDYIDRI++NRVFET+RQTVT+ PN
Sbjct: 63 WVAEPGIDRKAKDYIDRIYKNRVFETERQTVTIHPN 92

[Close]

BLAST of Lsi06G000250 vs. TrEMBL
Match: A0A0A0K8V3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014880 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.1e-23
Identity = 64/98 (65.31%), Postives = 71/98 (72.45%), Query Frame = 1


Query: 1  MGGNRQKKSHSSSFSFLGLFKSKRGRKDQDHHYYEQQQGSSWEDFSCPS-KVWPSDADKC 60
          MGG++ KKSHSS FSF    KSK  RK  DH+      G SW D    S KVWPSD DK 
Sbjct: 1  MGGHKHKKSHSS-FSFFSFLKSKWSRKG-DHY----DHGGSWLDEKSRSGKVWPSDEDKA 60

Query: 61 HRWVAEPGIDRKAKDYIDRIHRNRVFETQRQTVTLPPN 98
          H WVAEPGIDRKAKDYIDRI+RNRVFE++RQTVT+P N
Sbjct: 61 HHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVTIPTN 92

[Close]

BLAST of Lsi06G000250 vs. TAIR10
Match: AT3G05858.1 (AT3G05858.1 unknown protein)

HSP 1 Score: 64.3 bits (155), Expect = 4.9e-11
Identity = 43/102 (42.16%), Postives = 57/102 (55.88%), Query Frame = 1


Query: 1   MGGNRQKKSHSSS-FSFLGLFKSKRGRKDQDHHYYEQQQGSSWEDFSCPSKVWPSDADKC 60
           MGG  + +SHSS  FS    FK++R  +         +   SW+DF    K   SD DK 
Sbjct: 1   MGG--KNRSHSSKRFSLFSFFKTRRSHR--------VEADGSWDDFGYTRKAMASDEDKR 60

Query: 61  HRWVAEPGIDRKAKDYIDRIHRNRVFETQRQTVTLPPNNSDR 102
           + WVAEPGIDRKA  +I + H  RV E++RQ  TL P  S++
Sbjct: 61  Y-WVAEPGIDRKASAFIAKFHATRVSESERQ--TLSPYRSEK 89

[Close]

BLAST of Lsi06G000250 vs. TAIR10
Match: AT5G26620.1 (AT5G26620.1 unknown protein)

HSP 1 Score: 62.8 bits (151), Expect = 1.4e-10
Identity = 36/75 (48.00%), Postives = 45/75 (60.00%), Query Frame = 1


Query: 25  GRKDQDHHYYEQQQGSSWEDFSCPSKVWPSDADKCHRWVAEPGIDRKAKDYIDRIHRNRV 84
           G +   HH  E    +SW+D     K W SD DK + WVAEPGIDRKA  +I + H +RV
Sbjct: 2   GARRSSHHRVEAD--ASWDDVIYTRKAWASDEDKRY-WVAEPGIDRKASAFIAKFHASRV 61

Query: 85  FETQRQTVTLPPNNS 100
            E++RQ  TLPP  S
Sbjct: 62  SESERQ--TLPPCQS 71

[Close]

BLAST of Lsi06G000250 vs. NCBI nr
Match: gi|700210893|gb|KGN65989.1| (hypothetical protein Csa_1G560730 [Cucumis sativus])

HSP 1 Score: 181.0 bits (458), Expect = 1.0e-42
Identity = 85/98 (86.73%), Postives = 90/98 (91.84%), Query Frame = 1


Query: 1  MGGNRQKKSHSSSFSFLGLFKSKRGRKDQDHHYYEQQQGSSWEDFSCPSKVWPSDADKCH 60
          MGGNRQKKSH+SSFSFLGLFKSKR  +  DH+Y  QQQG+SWEDFSCPSKVWPSDADKCH
Sbjct: 1  MGGNRQKKSHNSSFSFLGLFKSKRSVRKGDHYYDHQQQGNSWEDFSCPSKVWPSDADKCH 60

Query: 61 RWVAEPGIDRKAKDYIDRIHRNRVFETQRQTVTLPPNN 99
          RWVAEPGIDRKAKDYIDRIHRNRVFET RQTVTLPP +
Sbjct: 61 RWVAEPGIDRKAKDYIDRIHRNRVFETPRQTVTLPPES 98

[Close]

BLAST of Lsi06G000250 vs. NCBI nr
Match: gi|700190666|gb|KGN45870.1| (hypothetical protein Csa_6G014900 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 6.6e-26
Identity = 66/100 (66.00%), Postives = 75/100 (75.00%), Query Frame = 1


Query: 1   MGGNRQKKSHSSSFSFLGLFKSKRGRKDQDHHYYEQQQGSSWED-FSCPSKVWPSDADKC 60
           MGGNRQKKSHSS FS    FKSKRGRK  DH+      G +W D     +KVWPSD DK 
Sbjct: 1   MGGNRQKKSHSS-FSIFSFFKSKRGRKG-DHY----DHGGAWPDEMPRSNKVWPSDEDKA 60

Query: 61  HRWVAEPGIDRKAKDYIDRIHRNRVFETQRQTVTLPPNNS 100
           H W+AEPGIDRKAKDYIDRI+RNRVFE++RQTVT+ PN +
Sbjct: 61  HHWIAEPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGT 94

[Close]

BLAST of Lsi06G000250 vs. NCBI nr
Match: gi|700190663|gb|KGN45867.1| (hypothetical protein Csa_6G014870 [Cucumis sativus])

HSP 1 Score: 124.0 bits (310), Expect = 1.5e-25
Identity = 65/100 (65.00%), Postives = 76/100 (76.00%), Query Frame = 1


Query: 1   MGGNRQKKSHSSSFSFLGLFKSKRGRKDQDHHYYEQQQGSSW-EDFSCPSKVWPSDADKC 60
           MGGNRQKKSHSS FS    FKS+RGRK  DH+      G +W ++    +KVWPSD DK 
Sbjct: 1   MGGNRQKKSHSS-FSIFSFFKSRRGRKG-DHY----DHGGAWLDEMPRSNKVWPSDEDKA 60

Query: 61  HRWVAEPGIDRKAKDYIDRIHRNRVFETQRQTVTLPPNNS 100
           H WVAEPGIDRKAKDYIDRI+RNRVFE++RQTVT+ PN +
Sbjct: 61  HHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGT 94

[Close]

BLAST of Lsi06G000250 vs. NCBI nr
Match: gi|700190669|gb|KGN45873.1| (hypothetical protein Csa_6G016905 [Cucumis sativus])

HSP 1 Score: 124.0 bits (310), Expect = 1.5e-25
Identity = 63/96 (65.62%), Postives = 74/96 (77.08%), Query Frame = 1


Query: 2  GGNRQKKSHSSSFSFLGLFKSKRGRKDQDHHYYEQQQGSSWEDFSCPSKVWPSDADKCHR 61
          G +RQKK+HSS FS    FKSKRGRK   + +     G++WED    SKVWPSD DK +R
Sbjct: 3  GSHRQKKTHSS-FSIFSFFKSKRGRKGDVYEH-----GTNWEDVPSSSKVWPSDEDKGYR 62

Query: 62 WVAEPGIDRKAKDYIDRIHRNRVFETQRQTVTLPPN 98
          WVAEPGIDRKAKDYIDRI++NRVFET+RQTVT+ PN
Sbjct: 63 WVAEPGIDRKAKDYIDRIYKNRVFETERQTVTIHPN 92

[Close]

BLAST of Lsi06G000250 vs. NCBI nr
Match: gi|700190664|gb|KGN45868.1| (hypothetical protein Csa_6G014880 [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 3.1e-23
Identity = 64/98 (65.31%), Postives = 71/98 (72.45%), Query Frame = 1


Query: 1  MGGNRQKKSHSSSFSFLGLFKSKRGRKDQDHHYYEQQQGSSWEDFSCPS-KVWPSDADKC 60
          MGG++ KKSHSS FSF    KSK  RK  DH+      G SW D    S KVWPSD DK 
Sbjct: 1  MGGHKHKKSHSS-FSFFSFLKSKWSRKG-DHY----DHGGSWLDEKSRSGKVWPSDEDKA 60

Query: 61 HRWVAEPGIDRKAKDYIDRIHRNRVFETQRQTVTLPPN 98
          H WVAEPGIDRKAKDYIDRI+RNRVFE++RQTVT+P N
Sbjct: 61 HHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVTIPTN 92

The following BLAST results are available for this feature:

BLAST of Lsi06G000250 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi06G000250 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LY99_CUCSA	7.1e-43	86.73	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560730 PE=4 SV=1	[more]
A0A0A0K7Y2_CUCSA	4.6e-26	66.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014900 PE=4 SV=1	[more]
A0A0A0KBW1_CUCSA	1.0e-25	65.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014870 PE=4 SV=1	[more]
A0A0A0K8W0_CUCSA	1.0e-25	65.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016905 PE=4 SV=1	[more]
A0A0A0K8V3_CUCSA	2.1e-23	65.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014880 PE=4 SV=1	[more]

BLAST of Lsi06G000250 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05858.1	4.9e-11	42.16	unknown protein	[more]
AT5G26620.1	1.4e-10	48.00	unknown protein	[more]

BLAST of Lsi06G000250 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210893\|gb\|KGN65989.1\|	1.0e-42	86.73	hypothetical protein Csa_1G560730 [Cucumis sativus]	[more]
gi\|700190666\|gb\|KGN45870.1\|	6.6e-26	66.00	hypothetical protein Csa_6G014900 [Cucumis sativus]	[more]
gi\|700190663\|gb\|KGN45867.1\|	1.5e-25	65.00	hypothetical protein Csa_6G014870 [Cucumis sativus]	[more]
gi\|700190669\|gb\|KGN45873.1\|	1.5e-25	65.63	hypothetical protein Csa_6G016905 [Cucumis sativus]	[more]
gi\|700190664\|gb\|KGN45868.1\|	3.1e-23	65.31	hypothetical protein Csa_6G014880 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G000250.1	Lsi06G000250.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33511	FAMILY NOT NAMED	coord: 1..92 score: 3.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi06G000250	Csa1G560730	Cucumber (Chinese Long) v2	culsiB075
Lsi06G000250	CSPI01G25650	Wild cucumber (PI 183967)	cpilsiB076
Lsi06G000250	Cucsa.050920	Cucumber (Gy14) v1	cgylsiB035
Lsi06G000250	CmaCh11G012040	Cucurbita maxima (Rimu)	cmalsiB133
Lsi06G000250	Cla005143	Watermelon (97103) v1	lsiwmB396
Lsi06G000250	MELO3C015240	Melon (DHL92) v3.5.1	lsimeB396
Lsi06G000250	ClCG03G017890	Watermelon (Charleston Gray)	lsiwcgB364
Lsi06G000250	MELO3C015240.2	Melon (DHL92) v3.6.1	lsimedB418
Lsi06G000250	Cla97C03G068290	Watermelon (97103) v2	lsiwmbB365
Lsi06G000250	Bhi02G001837	Wax gourd	lsiwgoB522
Lsi06G000250	CsaV3_1G038050	Cucumber (Chinese Long) v3	cuclsiB086

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G000250	Cucumber (Gy14) v2	cgyblsiB073
Lsi06G000250	Cucurbita maxima (Rimu)	cmalsiB076
Lsi06G000250	Cucurbita maxima (Rimu)	cmalsiB142
Lsi06G000250	Cucurbita moschata (Rifu)	cmolsiB062
Lsi06G000250	Cucurbita moschata (Rifu)	cmolsiB122
Lsi06G000250	Cucurbita pepo (Zucchini)	cpelsiB560