Cucsa.050920 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.050920
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Unknown protein
Location	scaffold00557 : 123699 .. 124139 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAAAAAAGAGAGTTTTTATATATACTTTTTCATAGAAAATTAAATTAGCAGCAGCAGCAGCAGCAGAGAGAGATATTAATATGGGAGGAAACAGGCAGAAGAAATCTCACAACTCCTCCTTTTCCTTCTTGGGGCTCTTCAAATCAAAAAGATCAGTTAGAAAAGGAGATCATTATTATGATCATCAGCAACAAGGCAACAGCTGGGAGGACTTCTCTTGCCCTAGCAAGGTGTGGCCAAGCGACGCCGATAAGTGCCACCGATGGGTGGCCGAGCCTGGCATCGACCGAAAAGCCAAAGATTACATTGACAGGATTCATCGTAACCGCGTCTTCGAAACACCACGCCAAACCGTCACCCTTCCTCCCGAGTCCCGATCATAGGATTCCCACCTGACGATTTAACACTTCTTCTTCTTCTTCTTCTTCCTCATTTACATT

mRNA sequence

ACAAAAAAGAGAGTTTTTATATATACTTTTTCATAGAAAATTAAATTagcagcagcagcagcagcagAGAGAGATATTAATATGGGAGGAAACAGGCAGAAGAAATCTCACAACTCCTCCTTTTCCTTCTTGGGGCTCTTCAAATCAAAAAGATCAGTTAGAAAAGGAGATCATTATTATGATCATCAGCAACAAGGCAACAGCTGGGAGGACTTCTCTTGCCCTAGCAAGGTGTGGCCAAGCGACGCCGATAAGTGCCACCGATGGGTGGCCGAGCCTGGCATCGACCGAAAAGCCAAAGATTACATTGACAGGATTCATCGTAACCGCGTCTTCGAAACACCACGCCAAACCGTCACCCTTCCTCCCGAGTCCCGATCATAGGATTCCCACCTGACGATTTAACActtcttcttcttcttcttcttcctcATTTACATT

Coding sequence (CDS)

ATGGGAGGAAACAGGCAGAAGAAATCTCACAACTCCTCCTTTTCCTTCTTGGGGCTCTTCAAATCAAAAAGATCAGTTAGAAAAGGAGATCATTATTATGATCATCAGCAACAAGGCAACAGCTGGGAGGACTTCTCTTGCCCTAGCAAGGTGTGGCCAAGCGACGCCGATAAGTGCCACCGATGGGTGGCCGAGCCTGGCATCGACCGAAAAGCCAAAGATTACATTGACAGGATTCATCGTAACCGCGTCTTCGAAACACCACGCCAAACCGTCACCCTTCCTCCCGAGTCCCGATCATAG

Protein sequence

MGGNRQKKSHNSSFSFLGLFKSKRSVRKGDHYYDHQQQGNSWEDFSCPSKVWPSDADKCHRWVAEPGIDRKAKDYIDRIHRNRVFETPRQTVTLPPESRS*

Homology

[Close]

BLAST of Cucsa.050920 vs. TrEMBL
Match: A0A0A0LY99_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560730 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 3.1e-54
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1


Query: 1   MGGNRQKKSHNSSFSFLGLFKSKRSVRKGDHYYDHQQQGNSWEDFSCPSKVWPSDADKCH 60
           MGGNRQKKSHNSSFSFLGLFKSKRSVRKGDHYYDHQQQGNSWEDFSCPSKVWPSDADKCH
Sbjct: 1   MGGNRQKKSHNSSFSFLGLFKSKRSVRKGDHYYDHQQQGNSWEDFSCPSKVWPSDADKCH 60

Query: 61  RWVAEPGIDRKAKDYIDRIHRNRVFETPRQTVTLPPESRS 101
           RWVAEPGIDRKAKDYIDRIHRNRVFETPRQTVTLPPESRS
Sbjct: 61  RWVAEPGIDRKAKDYIDRIHRNRVFETPRQTVTLPPESRS 100

[Close]

BLAST of Cucsa.050920 vs. TrEMBL
Match: A0A0A0K7Y2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014900 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 3.2e-27
Identity = 68/97 (70.10%), Postives = 74/97 (76.29%), Query Frame = 1


Query: 1  MGGNRQKKSHNSSFSFLGLFKSKRSVRKGDHYYDHQQQGNSWED-FSCPSKVWPSDADKC 60
          MGGNRQKKSH SSFS    FKSKR  RKGDHY DH   G +W D     +KVWPSD DK 
Sbjct: 1  MGGNRQKKSH-SSFSIFSFFKSKRG-RKGDHY-DH---GGAWPDEMPRSNKVWPSDEDKA 60

Query: 61 HRWVAEPGIDRKAKDYIDRIHRNRVFETPRQTVTLPP 97
          H W+AEPGIDRKAKDYIDRI+RNRVFE+ RQTVT+ P
Sbjct: 61 HHWIAEPGIDRKAKDYIDRIYRNRVFESERQTVTISP 91

[Close]

BLAST of Cucsa.050920 vs. TrEMBL
Match: A0A0A0KBW1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014870 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 7.1e-27
Identity = 67/97 (69.07%), Postives = 75/97 (77.32%), Query Frame = 1


Query: 1  MGGNRQKKSHNSSFSFLGLFKSKRSVRKGDHYYDHQQQGNSW-EDFSCPSKVWPSDADKC 60
          MGGNRQKKSH SSFS    FKS+R  RKGDHY DH   G +W ++    +KVWPSD DK 
Sbjct: 1  MGGNRQKKSH-SSFSIFSFFKSRRG-RKGDHY-DH---GGAWLDEMPRSNKVWPSDEDKA 60

Query: 61 HRWVAEPGIDRKAKDYIDRIHRNRVFETPRQTVTLPP 97
          H WVAEPGIDRKAKDYIDRI+RNRVFE+ RQTVT+ P
Sbjct: 61 HHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVTISP 91

[Close]

BLAST of Cucsa.050920 vs. TrEMBL
Match: A0A0A0K8W0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016905 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 7.9e-26
Identity = 64/95 (67.37%), Postives = 72/95 (75.79%), Query Frame = 1


Query: 2  GGNRQKKSHNSSFSFLGLFKSKRSVRKGDHYYDHQQQGNSWEDFSCPSKVWPSDADKCHR 61
          G +RQKK+H SSFS    FKSKR  RKGD Y    + G +WED    SKVWPSD DK +R
Sbjct: 3  GSHRQKKTH-SSFSIFSFFKSKRG-RKGDVY----EHGTNWEDVPSSSKVWPSDEDKGYR 62

Query: 62 WVAEPGIDRKAKDYIDRIHRNRVFETPRQTVTLPP 97
          WVAEPGIDRKAKDYIDRI++NRVFET RQTVT+ P
Sbjct: 63 WVAEPGIDRKAKDYIDRIYKNRVFETERQTVTIHP 91

[Close]

BLAST of Cucsa.050920 vs. TrEMBL
Match: A0A0A0K8V3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014880 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 7.9e-26
Identity = 68/96 (70.83%), Postives = 73/96 (76.04%), Query Frame = 1


Query: 1  MGGNRQKKSHNSSFSFLGLFKSKRSVRKGDHYYDHQQQGNSWEDFSCPS-KVWPSDADKC 60
          MGG++ KKSH SSFSF    KSK S RKGDHY DH   G SW D    S KVWPSD DK 
Sbjct: 1  MGGHKHKKSH-SSFSFFSFLKSKWS-RKGDHY-DH---GGSWLDEKSRSGKVWPSDEDKA 60

Query: 61 HRWVAEPGIDRKAKDYIDRIHRNRVFETPRQTVTLP 96
          H WVAEPGIDRKAKDYIDRI+RNRVFE+ RQTVT+P
Sbjct: 61 HHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVTIP 90

[Close]

BLAST of Cucsa.050920 vs. TAIR10
Match: AT3G05858.1 (AT3G05858.1 unknown protein)

HSP 1 Score: 67.4 bits (163), Expect = 5.8e-12
Identity = 41/94 (43.62%), Postives = 54/94 (57.45%), Query Frame = 1


Query: 1  MGGNRQKKSHNSS-FSFLGLFKSKRSVRKGDHYYDHQQQGNSWEDFSCPSKVWPSDADKC 60
          MGG  + +SH+S  FS    FK++RS R         +   SW+DF    K   SD DK 
Sbjct: 1  MGG--KNRSHSSKRFSLFSFFKTRRSHRV--------EADGSWDDFGYTRKAMASDEDKR 60

Query: 61 HRWVAEPGIDRKAKDYIDRIHRNRVFETPRQTVT 94
          + WVAEPGIDRKA  +I + H  RV E+ RQT++
Sbjct: 61 Y-WVAEPGIDRKASAFIAKFHATRVSESERQTLS 83

[Close]

BLAST of Cucsa.050920 vs. TAIR10
Match: AT5G26620.1 (AT5G26620.1 unknown protein)

HSP 1 Score: 60.1 bits (144), Expect = 9.2e-10
Identity = 31/56 (55.36%), Postives = 37/56 (66.07%), Query Frame = 1


Query: 41 SWEDFSCPSKVWPSDADKCHRWVAEPGIDRKAKDYIDRIHRNRVFETPRQTVTLPP 97
          SW+D     K W SD DK + WVAEPGIDRKA  +I + H +RV E+ RQ  TLPP
Sbjct: 16 SWDDVIYTRKAWASDEDKRY-WVAEPGIDRKASAFIAKFHASRVSESERQ--TLPP 68

[Close]

BLAST of Cucsa.050920 vs. NCBI nr
Match: gi|700210893|gb|KGN65989.1| (hypothetical protein Csa_1G560730 [Cucumis sativus])

HSP 1 Score: 218.8 bits (556), Expect = 4.4e-54
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1


Query: 1   MGGNRQKKSHNSSFSFLGLFKSKRSVRKGDHYYDHQQQGNSWEDFSCPSKVWPSDADKCH 60
           MGGNRQKKSHNSSFSFLGLFKSKRSVRKGDHYYDHQQQGNSWEDFSCPSKVWPSDADKCH
Sbjct: 1   MGGNRQKKSHNSSFSFLGLFKSKRSVRKGDHYYDHQQQGNSWEDFSCPSKVWPSDADKCH 60

Query: 61  RWVAEPGIDRKAKDYIDRIHRNRVFETPRQTVTLPPESRS 101
           RWVAEPGIDRKAKDYIDRIHRNRVFETPRQTVTLPPESRS
Sbjct: 61  RWVAEPGIDRKAKDYIDRIHRNRVFETPRQTVTLPPESRS 100

[Close]

BLAST of Cucsa.050920 vs. NCBI nr
Match: gi|700190666|gb|KGN45870.1| (hypothetical protein Csa_6G014900 [Cucumis sativus])

HSP 1 Score: 129.0 bits (323), Expect = 4.6e-27
Identity = 68/97 (70.10%), Postives = 74/97 (76.29%), Query Frame = 1


Query: 1  MGGNRQKKSHNSSFSFLGLFKSKRSVRKGDHYYDHQQQGNSWED-FSCPSKVWPSDADKC 60
          MGGNRQKKSH SSFS    FKSKR  RKGDHY DH   G +W D     +KVWPSD DK 
Sbjct: 1  MGGNRQKKSH-SSFSIFSFFKSKRG-RKGDHY-DH---GGAWPDEMPRSNKVWPSDEDKA 60

Query: 61 HRWVAEPGIDRKAKDYIDRIHRNRVFETPRQTVTLPP 97
          H W+AEPGIDRKAKDYIDRI+RNRVFE+ RQTVT+ P
Sbjct: 61 HHWIAEPGIDRKAKDYIDRIYRNRVFESERQTVTISP 91

[Close]

BLAST of Cucsa.050920 vs. NCBI nr
Match: gi|700190663|gb|KGN45867.1| (hypothetical protein Csa_6G014870 [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 1.0e-26
Identity = 67/97 (69.07%), Postives = 75/97 (77.32%), Query Frame = 1


Query: 1  MGGNRQKKSHNSSFSFLGLFKSKRSVRKGDHYYDHQQQGNSW-EDFSCPSKVWPSDADKC 60
          MGGNRQKKSH SSFS    FKS+R  RKGDHY DH   G +W ++    +KVWPSD DK 
Sbjct: 1  MGGNRQKKSH-SSFSIFSFFKSRRG-RKGDHY-DH---GGAWLDEMPRSNKVWPSDEDKA 60

Query: 61 HRWVAEPGIDRKAKDYIDRIHRNRVFETPRQTVTLPP 97
          H WVAEPGIDRKAKDYIDRI+RNRVFE+ RQTVT+ P
Sbjct: 61 HHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVTISP 91

[Close]

BLAST of Cucsa.050920 vs. NCBI nr
Match: gi|700190669|gb|KGN45873.1| (hypothetical protein Csa_6G016905 [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 1.1e-25
Identity = 64/95 (67.37%), Postives = 72/95 (75.79%), Query Frame = 1


Query: 2  GGNRQKKSHNSSFSFLGLFKSKRSVRKGDHYYDHQQQGNSWEDFSCPSKVWPSDADKCHR 61
          G +RQKK+H SSFS    FKSKR  RKGD Y    + G +WED    SKVWPSD DK +R
Sbjct: 3  GSHRQKKTH-SSFSIFSFFKSKRG-RKGDVY----EHGTNWEDVPSSSKVWPSDEDKGYR 62

Query: 62 WVAEPGIDRKAKDYIDRIHRNRVFETPRQTVTLPP 97
          WVAEPGIDRKAKDYIDRI++NRVFET RQTVT+ P
Sbjct: 63 WVAEPGIDRKAKDYIDRIYKNRVFETERQTVTIHP 91

[Close]

BLAST of Cucsa.050920 vs. NCBI nr
Match: gi|700190664|gb|KGN45868.1| (hypothetical protein Csa_6G014880 [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 1.1e-25
Identity = 68/96 (70.83%), Postives = 73/96 (76.04%), Query Frame = 1


Query: 1  MGGNRQKKSHNSSFSFLGLFKSKRSVRKGDHYYDHQQQGNSWEDFSCPS-KVWPSDADKC 60
          MGG++ KKSH SSFSF    KSK S RKGDHY DH   G SW D    S KVWPSD DK 
Sbjct: 1  MGGHKHKKSH-SSFSFFSFLKSKWS-RKGDHY-DH---GGSWLDEKSRSGKVWPSDEDKA 60

Query: 61 HRWVAEPGIDRKAKDYIDRIHRNRVFETPRQTVTLP 96
          H WVAEPGIDRKAKDYIDRI+RNRVFE+ RQTVT+P
Sbjct: 61 HHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVTIP 90

The following BLAST results are available for this feature:

BLAST of Cucsa.050920 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LY99_CUCSA	3.1e-54	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560730 PE=4 SV=1	[more]
A0A0A0K7Y2_CUCSA	3.2e-27	70.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014900 PE=4 SV=1	[more]
A0A0A0KBW1_CUCSA	7.1e-27	69.07	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014870 PE=4 SV=1	[more]
A0A0A0K8W0_CUCSA	7.9e-26	67.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016905 PE=4 SV=1	[more]
A0A0A0K8V3_CUCSA	7.9e-26	70.83	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014880 PE=4 SV=1	[more]

BLAST of Cucsa.050920 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05858.1	5.8e-12	43.62	unknown protein	[more]
AT5G26620.1	9.2e-10	55.36	unknown protein	[more]

BLAST of Cucsa.050920 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210893\|gb\|KGN65989.1\|	4.4e-54	100.00	hypothetical protein Csa_1G560730 [Cucumis sativus]	[more]
gi\|700190666\|gb\|KGN45870.1\|	4.6e-27	70.10	hypothetical protein Csa_6G014900 [Cucumis sativus]	[more]
gi\|700190663\|gb\|KGN45867.1\|	1.0e-26	69.07	hypothetical protein Csa_6G014870 [Cucumis sativus]	[more]
gi\|700190669\|gb\|KGN45873.1\|	1.1e-25	67.37	hypothetical protein Csa_6G016905 [Cucumis sativus]	[more]
gi\|700190664\|gb\|KGN45868.1\|	1.1e-25	70.83	hypothetical protein Csa_6G014880 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.050920.1	Cucsa.050920.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33511	FAMILY NOT NAMED	coord: 1..92 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.050920	Cla005143	Watermelon (97103) v1	cgywmB034
Cucsa.050920	Csa1G560730	Cucumber (Chinese Long) v2	cgycuB033
Cucsa.050920	MELO3C015240	Melon (DHL92) v3.5.1	cgymeB030
Cucsa.050920	ClCG03G017890	Watermelon (Charleston Gray)	cgywcgB035
Cucsa.050920	CSPI01G25650	Wild cucumber (PI 183967)	cgycpiB034
Cucsa.050920	CmaCh11G012040	Cucurbita maxima (Rimu)	cgycmaB0055
Cucsa.050920	Lsi06G000250	Bottle gourd (USVL1VR-Ls)	cgylsiB035
Cucsa.050920	MELO3C015240.2	Melon (DHL92) v3.6.1	cgymedB030
Cucsa.050920	CsaV3_1G038050	Cucumber (Chinese Long) v3	cgycucB035
Cucsa.050920	Cla97C03G068290	Watermelon (97103) v2	cgywmbB032
Cucsa.050920	Bhi02G001837	Wax gourd	cgywgoB035

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.050920	Cucurbita maxima (Rimu)	cgycmaB0053
Cucsa.050920	Cucurbita moschata (Rifu)	cgycmoB0048
Cucsa.050920	Cucurbita moschata (Rifu)	cgycmoB0051
Cucsa.050920	Melon (DHL92) v3.5.1	cgymeB031
Cucsa.050920	Cucurbita pepo (Zucchini)	cgycpeB0050
Cucsa.050920	Bottle gourd (USVL1VR-Ls)	cgylsiB033
Cucsa.050920	Melon (DHL92) v3.6.1	cgymedB029