CmaCh11G012040 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh11G012040
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	BnaC03g34390D protein
Location	Cma_Chr11 : 7244475 .. 7244756 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGGCAACAAGCACAAGAAATCTCACTCTTCCTTCTCCTTCTTTGGCTTCTTCAAATCAAAGAGGGCTCGAAAAGGAGAGCATTACGAGCACGACGAGCTCTCGTGCCCTAGAAAGGTGTGGCCAAGTGATGCAGACAAATGCCACCATTGGGTTGCGGAGCCTGGCATCGACCGAAAAGCTAAAGATTACATCGACAGGATCCATCGTAATCGTGTGTTGGAAACAGAACGCCAAACTATCACGGTTGCTCCTTCGGGAACTAGAACCGAAGTGTAA

mRNA sequence

ATGGGAGGCAACAAGCACAAGAAATCTCACTCTTCCTTCTCCTTCTTTGGCTTCTTCAAATCAAAGAGGGCTCGAAAAGGAGAGCATTACGAGCACGACGAGCTCTCGTGCCCTAGAAAGGTGTGGCCAAGTGATGCAGACAAATGCCACCATTGGGTTGCGGAGCCTGGCATCGACCGAAAAGCTAAAGATTACATCGACAGGATCCATCGTAATCGTGTGTTGGAAACAGAACGCCAAACTATCACGGTTGCTCCTTCGGGAACTAGAACCGAAGTGTAA

Coding sequence (CDS)

ATGGGAGGCAACAAGCACAAGAAATCTCACTCTTCCTTCTCCTTCTTTGGCTTCTTCAAATCAAAGAGGGCTCGAAAAGGAGAGCATTACGAGCACGACGAGCTCTCGTGCCCTAGAAAGGTGTGGCCAAGTGATGCAGACAAATGCCACCATTGGGTTGCGGAGCCTGGCATCGACCGAAAAGCTAAAGATTACATCGACAGGATCCATCGTAATCGTGTGTTGGAAACAGAACGCCAAACTATCACGGTTGCTCCTTCGGGAACTAGAACCGAAGTGTAA

Protein sequence

MGGNKHKKSHSSFSFFGFFKSKRARKGEHYEHDELSCPRKVWPSDADKCHHWVAEPGIDRKAKDYIDRIHRNRVLETERQTITVAPSGTRTEV

Homology

[Close]

BLAST of CmaCh11G012040 vs. TrEMBL
Match: A0A0A0K7Y2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014900 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.0e-32
Identity = 68/98 (69.39%), Postives = 81/98 (82.65%), Query Frame = 1


Query: 1  MGGNKHKKSHSSFSFFGFFKSKRARKGEHYEH-----DELSCPRKVWPSDADKCHHWVAE 60
          MGGN+ KKSHSSFS F FFKSKR RKG+HY+H     DE+    KVWPSD DK HHW+AE
Sbjct: 1  MGGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAE 60

Query: 61 PGIDRKAKDYIDRIHRNRVLETERQTITVAPSGTRTEV 94
          PGIDRKAKDYIDRI+RNRV E+ERQT+T++P+GT++ V
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of CmaCh11G012040 vs. TrEMBL
Match: A0A0A0KBW1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014870 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 1.8e-32
Identity = 68/98 (69.39%), Postives = 81/98 (82.65%), Query Frame = 1


Query: 1  MGGNKHKKSHSSFSFFGFFKSKRARKGEHYEH-----DELSCPRKVWPSDADKCHHWVAE 60
          MGGN+ KKSHSSFS F FFKS+R RKG+HY+H     DE+    KVWPSD DK HHWVAE
Sbjct: 1  MGGNRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVAE 60

Query: 61 PGIDRKAKDYIDRIHRNRVLETERQTITVAPSGTRTEV 94
          PGIDRKAKDYIDRI+RNRV E+ERQT+T++P+GT++ V
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of CmaCh11G012040 vs. TrEMBL
Match: A0A0A0K8V3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014880 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.4e-29
Identity = 66/89 (74.16%), Postives = 74/89 (83.15%), Query Frame = 1


Query: 1  MGGNKHKKSHSSFSFFGFFKSKRARKGEHYEH-----DELSCPRKVWPSDADKCHHWVAE 60
          MGG+KHKKSHSSFSFF F KSK +RKG+HY+H     DE S   KVWPSD DK HHWVAE
Sbjct: 1  MGGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAE 60

Query: 61 PGIDRKAKDYIDRIHRNRVLETERQTITV 85
          PGIDRKAKDYIDRI+RNRV E+ERQT+T+
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTI 89

[Close]

BLAST of CmaCh11G012040 vs. TrEMBL
Match: A0A0A0LY99_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560730 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 5.4e-29
Identity = 69/96 (71.88%), Postives = 77/96 (80.21%), Query Frame = 1


Query: 1  MGGNKHKKSH-SSFSFFGFFKSKRA-RKGEHY-EH-------DELSCPRKVWPSDADKCH 60
          MGGN+ KKSH SSFSF G FKSKR+ RKG+HY +H       ++ SCP KVWPSDADKCH
Sbjct: 1  MGGNRQKKSHNSSFSFLGLFKSKRSVRKGDHYYDHQQQGNSWEDFSCPSKVWPSDADKCH 60

Query: 61 HWVAEPGIDRKAKDYIDRIHRNRVLETERQTITVAP 87
           WVAEPGIDRKAKDYIDRIHRNRV ET RQT+T+ P
Sbjct: 61 RWVAEPGIDRKAKDYIDRIHRNRVFETPRQTVTLPP 96

[Close]

BLAST of CmaCh11G012040 vs. TrEMBL
Match: A0A0A0KAK6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014890 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 2.7e-28
Identity = 62/97 (63.92%), Postives = 76/97 (78.35%), Query Frame = 1


Query: 2  GGNKHKKSHSSFSFFGFFKSKRARKGEHYEH-----DELSCPRKVWPSDADKCHHWVAEP 61
          G N+ KK+H+SFS F FFKS+R RKG+H  H     DE+    KVWPSD DK HHWVAEP
Sbjct: 3  GNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVAEP 62

Query: 62 GIDRKAKDYIDRIHRNRVLETERQTITVAPSGTRTEV 94
          GIDRKAKDYIDRI+RNRV E+ERQT+T++P+G ++ V
Sbjct: 63 GIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSNV 99

[Close]

BLAST of CmaCh11G012040 vs. TAIR10
Match: AT3G05858.1 (AT3G05858.1 unknown protein)

HSP 1 Score: 68.6 bits (166), Expect = 2.4e-12
Identity = 39/84 (46.43%), Postives = 50/84 (59.52%), Query Frame = 1


Query: 1  MGGNKHKKSHSSFSFFGFFKSKRARKGE-HYEHDELSCPRKVWPSDADKCHHWVAEPGID 60
          MGG     S   FS F FFK++R+ + E     D+    RK   SD DK  +WVAEPGID
Sbjct: 1  MGGKNRSHSSKRFSLFSFFKTRRSHRVEADGSWDDFGYTRKAMASDEDK-RYWVAEPGID 60

Query: 61 RKAKDYIDRIHRNRVLETERQTIT 84
          RKA  +I + H  RV E+ERQT++
Sbjct: 61 RKASAFIAKFHATRVSESERQTLS 83

[Close]

BLAST of CmaCh11G012040 vs. TAIR10
Match: AT5G26620.1 (AT5G26620.1 unknown protein)

HSP 1 Score: 59.7 bits (143), Expect = 1.1e-09
Identity = 31/65 (47.69%), Postives = 41/65 (63.08%), Query Frame = 1


Query: 24 ARKGEHYE------HDELSCPRKVWPSDADKCHHWVAEPGIDRKAKDYIDRIHRNRVLET 83
          AR+  H+        D++   RK W SD DK  +WVAEPGIDRKA  +I + H +RV E+
Sbjct: 3  ARRSSHHRVEADASWDDVIYTRKAWASDEDK-RYWVAEPGIDRKASAFIAKFHASRVSES 62

[Close]

BLAST of CmaCh11G012040 vs. NCBI nr
Match: gi|700190666|gb|KGN45870.1| (hypothetical protein Csa_6G014900 [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 1.5e-32
Identity = 68/98 (69.39%), Postives = 81/98 (82.65%), Query Frame = 1


Query: 1  MGGNKHKKSHSSFSFFGFFKSKRARKGEHYEH-----DELSCPRKVWPSDADKCHHWVAE 60
          MGGN+ KKSHSSFS F FFKSKR RKG+HY+H     DE+    KVWPSD DK HHW+AE
Sbjct: 1  MGGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAE 60

Query: 61 PGIDRKAKDYIDRIHRNRVLETERQTITVAPSGTRTEV 94
          PGIDRKAKDYIDRI+RNRV E+ERQT+T++P+GT++ V
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of CmaCh11G012040 vs. NCBI nr
Match: gi|700190663|gb|KGN45867.1| (hypothetical protein Csa_6G014870 [Cucumis sativus])

HSP 1 Score: 146.4 bits (368), Expect = 2.6e-32
Identity = 68/98 (69.39%), Postives = 81/98 (82.65%), Query Frame = 1


Query: 1  MGGNKHKKSHSSFSFFGFFKSKRARKGEHYEH-----DELSCPRKVWPSDADKCHHWVAE 60
          MGGN+ KKSHSSFS F FFKS+R RKG+HY+H     DE+    KVWPSD DK HHWVAE
Sbjct: 1  MGGNRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVAE 60

Query: 61 PGIDRKAKDYIDRIHRNRVLETERQTITVAPSGTRTEV 94
          PGIDRKAKDYIDRI+RNRV E+ERQT+T++P+GT++ V
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of CmaCh11G012040 vs. NCBI nr
Match: gi|700190664|gb|KGN45868.1| (hypothetical protein Csa_6G014880 [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 2.0e-29
Identity = 66/89 (74.16%), Postives = 74/89 (83.15%), Query Frame = 1


Query: 1  MGGNKHKKSHSSFSFFGFFKSKRARKGEHYEH-----DELSCPRKVWPSDADKCHHWVAE 60
          MGG+KHKKSHSSFSFF F KSK +RKG+HY+H     DE S   KVWPSD DK HHWVAE
Sbjct: 1  MGGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAE 60

Query: 61 PGIDRKAKDYIDRIHRNRVLETERQTITV 85
          PGIDRKAKDYIDRI+RNRV E+ERQT+T+
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTI 89

[Close]

BLAST of CmaCh11G012040 vs. NCBI nr
Match: gi|700210893|gb|KGN65989.1| (hypothetical protein Csa_1G560730 [Cucumis sativus])

HSP 1 Score: 134.8 bits (338), Expect = 7.7e-29
Identity = 69/96 (71.88%), Postives = 77/96 (80.21%), Query Frame = 1


Query: 1  MGGNKHKKSH-SSFSFFGFFKSKRA-RKGEHY-EH-------DELSCPRKVWPSDADKCH 60
          MGGN+ KKSH SSFSF G FKSKR+ RKG+HY +H       ++ SCP KVWPSDADKCH
Sbjct: 1  MGGNRQKKSHNSSFSFLGLFKSKRSVRKGDHYYDHQQQGNSWEDFSCPSKVWPSDADKCH 60

Query: 61 HWVAEPGIDRKAKDYIDRIHRNRVLETERQTITVAP 87
           WVAEPGIDRKAKDYIDRIHRNRV ET RQT+T+ P
Sbjct: 61 RWVAEPGIDRKAKDYIDRIHRNRVFETPRQTVTLPP 96

[Close]

BLAST of CmaCh11G012040 vs. NCBI nr
Match: gi|700190665|gb|KGN45869.1| (hypothetical protein Csa_6G014890 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 3.8e-28
Identity = 62/97 (63.92%), Postives = 76/97 (78.35%), Query Frame = 1


Query: 2  GGNKHKKSHSSFSFFGFFKSKRARKGEHYEH-----DELSCPRKVWPSDADKCHHWVAEP 61
          G N+ KK+H+SFS F FFKS+R RKG+H  H     DE+    KVWPSD DK HHWVAEP
Sbjct: 3  GNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVAEP 62

Query: 62 GIDRKAKDYIDRIHRNRVLETERQTITVAPSGTRTEV 94
          GIDRKAKDYIDRI+RNRV E+ERQT+T++P+G ++ V
Sbjct: 63 GIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSNV 99

The following BLAST results are available for this feature:

BLAST of CmaCh11G012040 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh11G012040 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7Y2_CUCSA	1.0e-32	69.39	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014900 PE=4 SV=1	[more]
A0A0A0KBW1_CUCSA	1.8e-32	69.39	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014870 PE=4 SV=1	[more]
A0A0A0K8V3_CUCSA	1.4e-29	74.16	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014880 PE=4 SV=1	[more]
A0A0A0LY99_CUCSA	5.4e-29	71.88	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560730 PE=4 SV=1	[more]
A0A0A0KAK6_CUCSA	2.7e-28	63.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014890 PE=4 SV=1	[more]

BLAST of CmaCh11G012040 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05858.1	2.4e-12	46.43	unknown protein	[more]
AT5G26620.1	1.1e-09	47.69	unknown protein	[more]

BLAST of CmaCh11G012040 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700190666\|gb\|KGN45870.1\|	1.5e-32	69.39	hypothetical protein Csa_6G014900 [Cucumis sativus]	[more]
gi\|700190663\|gb\|KGN45867.1\|	2.6e-32	69.39	hypothetical protein Csa_6G014870 [Cucumis sativus]	[more]
gi\|700190664\|gb\|KGN45868.1\|	2.0e-29	74.16	hypothetical protein Csa_6G014880 [Cucumis sativus]	[more]
gi\|700210893\|gb\|KGN65989.1\|	7.7e-29	71.88	hypothetical protein Csa_1G560730 [Cucumis sativus]	[more]
gi\|700190665\|gb\|KGN45869.1\|	3.8e-28	63.92	hypothetical protein Csa_6G014890 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G012040.1	CmaCh11G012040.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33511	FAMILY NOT NAMED	coord: 1..85 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh11G012040	Cucsa.050920	Cucumber (Gy14) v1	cgycmaB0055
CmaCh11G012040	Cla005143	Watermelon (97103) v1	cmawmB101
CmaCh11G012040	Csa1G560730	Cucumber (Chinese Long) v2	cmacuB106
CmaCh11G012040	MELO3C015240	Melon (DHL92) v3.5.1	cmameB108
CmaCh11G012040	ClCG03G017890	Watermelon (Charleston Gray)	cmawcgB114
CmaCh11G012040	CSPI01G25650	Wild cucumber (PI 183967)	cmacpiB105
CmaCh11G012040	Lsi06G000250	Bottle gourd (USVL1VR-Ls)	cmalsiB133
CmaCh11G012040	MELO3C015240.2	Melon (DHL92) v3.6.1	cmamedB116
CmaCh11G012040	CsaV3_1G038050	Cucumber (Chinese Long) v3	cmacucB0120
CmaCh11G012040	Cla97C03G068290	Watermelon (97103) v2	cmawmbB117
CmaCh11G012040	Bhi02G001837	Wax gourd	cmawgoB0171

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh11G012040	Bottle gourd (USVL1VR-Ls)	cmalsiB142