Csa1G560730 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G560730
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 20390208 .. 20390859 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCACAGTTCAAAACCCAACAAAATTTAAACACACACAAAAGAGAAGAGAGTTTTTGGGTGTGAAGAAAACAAAAAAGAGAGTTTTTATATATACTTTTTCATAGAAAATTAAATTAGCAGCAGCAGCAGCAGCAGAGAGAGATATTAATATGGGAGGAAACAGGCAGAAGAAATCTCACAACTCCTCCTTTTCCTTCTTGGGGCTCTTCAAATCAAAAAGATCAGTTAGAAAAGGAGATCATTATTATGATCATCAGCAGCAAGGCAACAGCTGGGAGGACTTCTCTTGCCCTAGCAAGGTGTGGCCAAGCGACGCCGATAAGTGCCACCGATGGGTGGCCGAGCCTGGCATCGACCGAAAAGCCAAAGATTACATTGACAGGATTCATCGTAACCGCGTCTTCGAAACACCACGCCAAACCGTCACCCTTCCTCCCGAGTCCCGATCATAGGATTCCCACCTGACGATTTAACACTTCTTCTTCTTCTTCTTCTTCCTCATTTACATTTCTGTATATCTTTCTTTCTTTATTATTTTCTTCTCCCCCTCTCATTAAATGAGTCCTAGCTATTGTAATTCCCTTCTGATCAACTTTGCTCATCATCACTTTTCCTTCTTCATCTAATAATAATATATTATACATTTTATTC

mRNA sequence

ATGGGAGGAAACAGGCAGAAGAAATCTCACAACTCCTCCTTTTCCTTCTTGGGGCTCTTCAAATCAAAAAGATCAGTTAGAAAAGGAGATCATTATTATGATCATCAGCAGCAAGGCAACAGCTGGGAGGACTTCTCTTGCCCTAGCAAGGTGTGGCCAAGCGACGCCGATAAGTGCCACCGATGGGTGGCCGAGCCTGGCATCGACCGAAAAGCCAAAGATTACATTGACAGGATTCATCGTAACCGCGTCTTCGAAACACCACGCCAAACCGTCACCCTTCCTCCCGAGTCCCGATCATAG

Coding sequence (CDS)

ATGGGAGGAAACAGGCAGAAGAAATCTCACAACTCCTCCTTTTCCTTCTTGGGGCTCTTCAAATCAAAAAGATCAGTTAGAAAAGGAGATCATTATTATGATCATCAGCAGCAAGGCAACAGCTGGGAGGACTTCTCTTGCCCTAGCAAGGTGTGGCCAAGCGACGCCGATAAGTGCCACCGATGGGTGGCCGAGCCTGGCATCGACCGAAAAGCCAAAGATTACATTGACAGGATTCATCGTAACCGCGTCTTCGAAACACCACGCCAAACCGTCACCCTTCCTCCCGAGTCCCGATCATAG

Protein sequence

MGGNRQKKSHNSSFSFLGLFKSKRSVRKGDHYYDHQQQGNSWEDFSCPSKVWPSDADKCHRWVAEPGIDRKAKDYIDRIHRNRVFETPRQTVTLPPESRS*

Homology

[Close]

BLAST of Csa1G560730 vs. TrEMBL
Match: A0A0A0LY99_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560730 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 3.1e-54
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1


Query: 1   MGGNRQKKSHNSSFSFLGLFKSKRSVRKGDHYYDHQQQGNSWEDFSCPSKVWPSDADKCH 60
           MGGNRQKKSHNSSFSFLGLFKSKRSVRKGDHYYDHQQQGNSWEDFSCPSKVWPSDADKCH
Sbjct: 1   MGGNRQKKSHNSSFSFLGLFKSKRSVRKGDHYYDHQQQGNSWEDFSCPSKVWPSDADKCH 60

Query: 61  RWVAEPGIDRKAKDYIDRIHRNRVFETPRQTVTLPPESRS 101
           RWVAEPGIDRKAKDYIDRIHRNRVFETPRQTVTLPPESRS
Sbjct: 61  RWVAEPGIDRKAKDYIDRIHRNRVFETPRQTVTLPPESRS 100

[Close]

BLAST of Csa1G560730 vs. TrEMBL
Match: A0A0A0K7Y2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014900 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 3.2e-27
Identity = 68/97 (70.10%), Postives = 74/97 (76.29%), Query Frame = 1


Query: 1  MGGNRQKKSHNSSFSFLGLFKSKRSVRKGDHYYDHQQQGNSWED-FSCPSKVWPSDADKC 60
          MGGNRQKKSH SSFS    FKSKR  RKGDHY DH   G +W D     +KVWPSD DK 
Sbjct: 1  MGGNRQKKSH-SSFSIFSFFKSKRG-RKGDHY-DH---GGAWPDEMPRSNKVWPSDEDKA 60

Query: 61 HRWVAEPGIDRKAKDYIDRIHRNRVFETPRQTVTLPP 97
          H W+AEPGIDRKAKDYIDRI+RNRVFE+ RQTVT+ P
Sbjct: 61 HHWIAEPGIDRKAKDYIDRIYRNRVFESERQTVTISP 91

[Close]

BLAST of Csa1G560730 vs. TrEMBL
Match: A0A0A0KBW1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014870 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 7.1e-27
Identity = 67/97 (69.07%), Postives = 75/97 (77.32%), Query Frame = 1


Query: 1  MGGNRQKKSHNSSFSFLGLFKSKRSVRKGDHYYDHQQQGNSW-EDFSCPSKVWPSDADKC 60
          MGGNRQKKSH SSFS    FKS+R  RKGDHY DH   G +W ++    +KVWPSD DK 
Sbjct: 1  MGGNRQKKSH-SSFSIFSFFKSRRG-RKGDHY-DH---GGAWLDEMPRSNKVWPSDEDKA 60

Query: 61 HRWVAEPGIDRKAKDYIDRIHRNRVFETPRQTVTLPP 97
          H WVAEPGIDRKAKDYIDRI+RNRVFE+ RQTVT+ P
Sbjct: 61 HHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVTISP 91

[Close]

BLAST of Csa1G560730 vs. TrEMBL
Match: A0A0A0K8W0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016905 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 7.9e-26
Identity = 64/95 (67.37%), Postives = 72/95 (75.79%), Query Frame = 1


Query: 2  GGNRQKKSHNSSFSFLGLFKSKRSVRKGDHYYDHQQQGNSWEDFSCPSKVWPSDADKCHR 61
          G +RQKK+H SSFS    FKSKR  RKGD Y    + G +WED    SKVWPSD DK +R
Sbjct: 3  GSHRQKKTH-SSFSIFSFFKSKRG-RKGDVY----EHGTNWEDVPSSSKVWPSDEDKGYR 62

Query: 62 WVAEPGIDRKAKDYIDRIHRNRVFETPRQTVTLPP 97
          WVAEPGIDRKAKDYIDRI++NRVFET RQTVT+ P
Sbjct: 63 WVAEPGIDRKAKDYIDRIYKNRVFETERQTVTIHP 91

[Close]

BLAST of Csa1G560730 vs. TrEMBL
Match: A0A0A0K8V3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014880 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 7.9e-26
Identity = 68/96 (70.83%), Postives = 73/96 (76.04%), Query Frame = 1


Query: 1  MGGNRQKKSHNSSFSFLGLFKSKRSVRKGDHYYDHQQQGNSWEDFSCPS-KVWPSDADKC 60
          MGG++ KKSH SSFSF    KSK S RKGDHY DH   G SW D    S KVWPSD DK 
Sbjct: 1  MGGHKHKKSH-SSFSFFSFLKSKWS-RKGDHY-DH---GGSWLDEKSRSGKVWPSDEDKA 60

Query: 61 HRWVAEPGIDRKAKDYIDRIHRNRVFETPRQTVTLP 96
          H WVAEPGIDRKAKDYIDRI+RNRVFE+ RQTVT+P
Sbjct: 61 HHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVTIP 90

[Close]

BLAST of Csa1G560730 vs. TAIR10
Match: AT3G05858.1 (AT3G05858.1 unknown protein)

HSP 1 Score: 67.4 bits (163), Expect = 5.8e-12
Identity = 41/94 (43.62%), Postives = 52/94 (55.32%), Query Frame = 1


Query: 1  MGGNRQKKSHNSS-FSFLGLFKSKRSVRKGDHYYDHQQQGNSWEDFSCPSKVWPSDADKC 60
          MGG  + +SH+S  FS    FK++RS R         +   SW+DF    K   SD DK 
Sbjct: 1  MGG--KNRSHSSKRFSLFSFFKTRRSHRV--------EADGSWDDFGYTRKAMASDEDKR 60

Query: 61 HRWVAEPGIDRKAKDYIDRIHRNRVFETPRQTVT 94
          + WVAEPGIDRKA  +I + H  RV E+ RQT++
Sbjct: 61 Y-WVAEPGIDRKASAFIAKFHATRVSESERQTLS 83

[Close]

BLAST of Csa1G560730 vs. TAIR10
Match: AT5G26620.1 (AT5G26620.1 unknown protein)

HSP 1 Score: 60.1 bits (144), Expect = 9.2e-10
Identity = 31/56 (55.36%), Postives = 35/56 (62.50%), Query Frame = 1


Query: 41 SWEDFSCPSKVWPSDADKCHRWVAEPGIDRKAKDYIDRIHRNRVFETPRQTVTLPP 97
          SW+D     K W SD DK + WVAEPGIDRKA  +I + H +RV E+ RQ  TLPP
Sbjct: 16 SWDDVIYTRKAWASDEDKRY-WVAEPGIDRKASAFIAKFHASRVSESERQ--TLPP 68

[Close]

BLAST of Csa1G560730 vs. NCBI nr
Match: gi|700210893|gb|KGN65989.1| (hypothetical protein Csa_1G560730 [Cucumis sativus])

HSP 1 Score: 218.8 bits (556), Expect = 4.4e-54
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1


Query: 1   MGGNRQKKSHNSSFSFLGLFKSKRSVRKGDHYYDHQQQGNSWEDFSCPSKVWPSDADKCH 60
           MGGNRQKKSHNSSFSFLGLFKSKRSVRKGDHYYDHQQQGNSWEDFSCPSKVWPSDADKCH
Sbjct: 1   MGGNRQKKSHNSSFSFLGLFKSKRSVRKGDHYYDHQQQGNSWEDFSCPSKVWPSDADKCH 60

Query: 61  RWVAEPGIDRKAKDYIDRIHRNRVFETPRQTVTLPPESRS 101
           RWVAEPGIDRKAKDYIDRIHRNRVFETPRQTVTLPPESRS
Sbjct: 61  RWVAEPGIDRKAKDYIDRIHRNRVFETPRQTVTLPPESRS 100

[Close]

BLAST of Csa1G560730 vs. NCBI nr
Match: gi|700190666|gb|KGN45870.1| (hypothetical protein Csa_6G014900 [Cucumis sativus])

HSP 1 Score: 129.0 bits (323), Expect = 4.6e-27
Identity = 68/97 (70.10%), Postives = 74/97 (76.29%), Query Frame = 1


Query: 1  MGGNRQKKSHNSSFSFLGLFKSKRSVRKGDHYYDHQQQGNSWED-FSCPSKVWPSDADKC 60
          MGGNRQKKSH SSFS    FKSKR  RKGDHY DH   G +W D     +KVWPSD DK 
Sbjct: 1  MGGNRQKKSH-SSFSIFSFFKSKRG-RKGDHY-DH---GGAWPDEMPRSNKVWPSDEDKA 60

Query: 61 HRWVAEPGIDRKAKDYIDRIHRNRVFETPRQTVTLPP 97
          H W+AEPGIDRKAKDYIDRI+RNRVFE+ RQTVT+ P
Sbjct: 61 HHWIAEPGIDRKAKDYIDRIYRNRVFESERQTVTISP 91

[Close]

BLAST of Csa1G560730 vs. NCBI nr
Match: gi|700190663|gb|KGN45867.1| (hypothetical protein Csa_6G014870 [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 1.0e-26
Identity = 67/97 (69.07%), Postives = 75/97 (77.32%), Query Frame = 1


Query: 1  MGGNRQKKSHNSSFSFLGLFKSKRSVRKGDHYYDHQQQGNSW-EDFSCPSKVWPSDADKC 60
          MGGNRQKKSH SSFS    FKS+R  RKGDHY DH   G +W ++    +KVWPSD DK 
Sbjct: 1  MGGNRQKKSH-SSFSIFSFFKSRRG-RKGDHY-DH---GGAWLDEMPRSNKVWPSDEDKA 60

Query: 61 HRWVAEPGIDRKAKDYIDRIHRNRVFETPRQTVTLPP 97
          H WVAEPGIDRKAKDYIDRI+RNRVFE+ RQTVT+ P
Sbjct: 61 HHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVTISP 91

[Close]

BLAST of Csa1G560730 vs. NCBI nr
Match: gi|700190669|gb|KGN45873.1| (hypothetical protein Csa_6G016905 [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 1.1e-25
Identity = 64/95 (67.37%), Postives = 72/95 (75.79%), Query Frame = 1


Query: 2  GGNRQKKSHNSSFSFLGLFKSKRSVRKGDHYYDHQQQGNSWEDFSCPSKVWPSDADKCHR 61
          G +RQKK+H SSFS    FKSKR  RKGD Y    + G +WED    SKVWPSD DK +R
Sbjct: 3  GSHRQKKTH-SSFSIFSFFKSKRG-RKGDVY----EHGTNWEDVPSSSKVWPSDEDKGYR 62

Query: 62 WVAEPGIDRKAKDYIDRIHRNRVFETPRQTVTLPP 97
          WVAEPGIDRKAKDYIDRI++NRVFET RQTVT+ P
Sbjct: 63 WVAEPGIDRKAKDYIDRIYKNRVFETERQTVTIHP 91

[Close]

BLAST of Csa1G560730 vs. NCBI nr
Match: gi|700190664|gb|KGN45868.1| (hypothetical protein Csa_6G014880 [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 1.1e-25
Identity = 68/96 (70.83%), Postives = 73/96 (76.04%), Query Frame = 1


Query: 1  MGGNRQKKSHNSSFSFLGLFKSKRSVRKGDHYYDHQQQGNSWEDFSCPS-KVWPSDADKC 60
          MGG++ KKSH SSFSF    KSK S RKGDHY DH   G SW D    S KVWPSD DK 
Sbjct: 1  MGGHKHKKSH-SSFSFFSFLKSKWS-RKGDHY-DH---GGSWLDEKSRSGKVWPSDEDKA 60

Query: 61 HRWVAEPGIDRKAKDYIDRIHRNRVFETPRQTVTLP 96
          H WVAEPGIDRKAKDYIDRI+RNRVFE+ RQTVT+P
Sbjct: 61 HHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVTIP 90

The following BLAST results are available for this feature:

BLAST of Csa1G560730 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LY99_CUCSA	3.1e-54	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560730 PE=4 SV=1	[more]
A0A0A0K7Y2_CUCSA	3.2e-27	70.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014900 PE=4 SV=1	[more]
A0A0A0KBW1_CUCSA	7.1e-27	69.07	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014870 PE=4 SV=1	[more]
A0A0A0K8W0_CUCSA	7.9e-26	67.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016905 PE=4 SV=1	[more]
A0A0A0K8V3_CUCSA	7.9e-26	70.83	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014880 PE=4 SV=1	[more]

BLAST of Csa1G560730 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05858.1	5.8e-12	43.62	unknown protein	[more]
AT5G26620.1	9.2e-10	55.36	unknown protein	[more]

BLAST of Csa1G560730 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210893\|gb\|KGN65989.1\|	4.4e-54	100.00	hypothetical protein Csa_1G560730 [Cucumis sativus]	[more]
gi\|700190666\|gb\|KGN45870.1\|	4.6e-27	70.10	hypothetical protein Csa_6G014900 [Cucumis sativus]	[more]
gi\|700190663\|gb\|KGN45867.1\|	1.0e-26	69.07	hypothetical protein Csa_6G014870 [Cucumis sativus]	[more]
gi\|700190669\|gb\|KGN45873.1\|	1.1e-25	67.37	hypothetical protein Csa_6G016905 [Cucumis sativus]	[more]
gi\|700190664\|gb\|KGN45868.1\|	1.1e-25	70.83	hypothetical protein Csa_6G014880 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU090326	cucumber EST collection version 3.0	transcribed_cluster
CU095198	cucumber EST collection version 3.0	transcribed_cluster
CU106336	cucumber EST collection version 3.0	transcribed_cluster
CU129259	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G560730.1	Csa1G560730.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU095198	CU095198	transcribed_cluster
CU106336	CU106336	transcribed_cluster
CU090326	CU090326	transcribed_cluster
CU129259	CU129259	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33511	FAMILY NOT NAMED	coord: 1..92 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G560730	Cla005143	Watermelon (97103) v1	cuwmB013
Csa1G560730	MELO3C015240	Melon (DHL92) v3.5.1	cumeB058
Csa1G560730	ClCG03G017890	Watermelon (Charleston Gray)	cuwcgB040
Csa1G560730	Lsi06G000250	Bottle gourd (USVL1VR-Ls)	culsiB075
Csa1G560730	MELO3C015240.2	Melon (DHL92) v3.6.1	cumedB033
Csa1G560730	Cla97C03G068290	Watermelon (97103) v2	cuwmbB037
Csa1G560730	Bhi02G001837	Wax gourd	cuwgoB085
Csa1G560730	CSPI01G25650	Wild cucumber (PI 183967)	cpicuB001
Csa1G560730	Cucsa.050920	Cucumber (Gy14) v1	cgycuB033
Csa1G560730	CmaCh11G012040	Cucurbita maxima (Rimu)	cmacuB106

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G560730	Cucurbita pepo (Zucchini)	cpecuB353
Csa1G560730	Cucurbita pepo (Zucchini)	cpecuB661
Csa1G560730	Bottle gourd (USVL1VR-Ls)	culsiB058
Csa1G560730	Cucumber (Gy14) v2	cgybcuB002
Csa1G560730	Melon (DHL92) v3.6.1	cumedB052
Csa1G560730	Cucurbita maxima (Rimu)	cmacuB053
Csa1G560730	Cucurbita moschata (Rifu)	cmocuB042
Csa1G560730	Cucurbita moschata (Rifu)	cmocuB096