Lsi05G019990 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G019990
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_35
Location	chr05 : 27043079 .. 27045700 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTTGCCCAAAAAATAATAAAAAGAAAAAAGAAAAAGAAAAAGAAAAAGGAAGCATCCTTGTTAGTTTCTTCTGTAACTCAAATCTCTCTGCCTTCTTTTGTCATTTTTCTTCAGCCATGGATGAAACACTGACACTCATCACAATAATCCTTAATTAATTCTTCAATATTTTCAACTCCATCTTCGAAATTGCCTCTCACTTTCCCATTTCCATCCATTTATATACATCCCATCACTCTCACTTCAATTTTCCATTCATTTCATTTTCTGCTCTGTTTTTCTTAATTCCCCTGTTCTTCAAGCTGCTTCAATGGCGGCGGCTACTCTCTCATTTTCCCCTTTTCCTTTCAATCGAGATGGATCCACTAGAATGCTCAAGGATTTTCTTCACGAAACCAATGCAAATGGAATCGCATCTTCTAAAACTAAACCGGCGTCGTTTAAGGCTCTGGCTATCCACGCCGTCGTCTCCGCCGTGAAGAGGATCTCGTTTCCGTCTGTGAAATCGCCAAGGATTTTCCCCAGAAGCCTTTCGCGGAGGCTGTTGAGGAAAACGGAGAGAAATGAGAGAGAAATCGGAGGCGATTTCGTTGTTAAGATTAAGGACATCATACGGTGGAAATCGTTCAGGGATTTGGTCGACGAGACGGCGGCGGCTCCTTCGCTTGATTTCGCCGATTCGCCGGATCATTACACGGCCGCCGCTATGACTACGACGACGACGACGACGACGACTAGCAGTTATAGTTCGAGCTGGTGCGAGAGCGATTTCACGGCGGAGGATTTGCCGTCGCCGTCGTGGAGAGATTGGTCCGACGACGGTGCAGTGGGAAAAATGTATTTCCCATGTGTCGGTGAAGATTCGACGAAAACGATATTGGCACACGCAGAAAACGACAAAAAGGTGAGCAATAATTCAGTACTTCGCACATTTGGTGGAATTTGTCGTCGTCTGATTTTTATTATCACGTTTTGCCACCCTATGATCCGTTTTATGTGGTTGAGATTTAACAAGAGCGATTGTGAACCGTTAGATCAAATCAAATCTCTTTTAACAAAGCTAGATTCGTCCGTAGAGTACAAGTGGCACTGAGATTGGATATTTAAAAATTGGGGTTTTCTGAATTAATAATAAATTATATTACTTTCTATAATTTTTTCTTTTAAAAAAAATTAAACTTTAGTATTATGTATATTAACATAACTGATCAACTGGTCAAAAGTGGTCAAAAGAATATTTTATATTTGACTTATTTTCTAGATTTTTATCTTTTTATCTTATTATTATTATTATTTTTGTTTACTTCTTTCAACTTCTTACCTTTTTAAAAAAAAACTTAAAAAGAAATATTAAAGTCATTTTTTTAAAAGCTTTAATTGCCCTATAGTATTTATTTTCTAAACTAAGCCCATATTTACTAGTCCGTAATTAAATTTAATATAATTATAATAGATTTTTATTATTATTATTTATAATTCACATAATATCGTTAGCTAGTTTTTTGGTAACATATTTAAATGGGTCTCACTTTTCATATTACGATTAATTGATTACGTCATAAGAGAAATGTAACGTAAAAATTTGTTATTTTTATGTAAATTCAAATTAGGTATAATTTTTATTAAACAATTAGATTTGCAAATTATTAAAGTCTCGTTTTGATAACAATTTTGTTTTTTATTTTACATTTGAACATTGTGTTGGTTTTCTCACAACTTCTTACTTATGGTATTCATATTTCCTATCTAAAAAGCTCTAAGCGGATTTTCAAAAACAAAACTTTTTTTTTTTTGTTTTAACTTTCCAAATTTTGAAAACACTCATAAAATGGGTAGACAACAAAGCATAGAAAACGGTAAATGGAAGTGATTTTTGTAATCTTAATTTTCAAAAACTAAAGAAAAAAATTCTCTCCAATCTCAAAATCCTATTTCATTTCCAATCCTCAAAAAGTAACAACTTAGTATCATTTTACAGGTAGGTGTAAATGCAGTATCAAGACGTGACGATAAAGAAGAAGAACAAAAGATATTAGACGAAAGTGCACAGTGCCTATTAAAGCACGTGAATGAAGCAATTTCATTATCAAAAAATCGCAGATTGACAGAACATGATGGGTTGGATTGGTTGCTTCTAGAATTGTTTCGACCAGAAGTTGCATATTGTCAAGACGTGGATGAACGAGCAAGAAACAATGACAAAATTAGGGCAAATAAAGGCAAAGAAGATGAAGATGGCTATGATTGGTTTTTGTCTCACAAGGGGAAGGAAACTTATATGAGAGAAATGGAGAGGGAAGGAAAATGGGAGATTTTTGGTGTTGAGGAGAAAATTGAATTAGGATTAGAAATTGAAGGGGAAATTTTGGGATGTTTGGTTGATGAAATTCTACTTGATACTTTCTAATTATCACTAGAAAAATTTTTCCTTTTATTTTTATAGATTACTTCAAAATTCAAAATCCAAATATGTTGTTACAAAAGTTACTTTATTAGTTTCATTTTTTAGAAATTAACTTGTCTTATTAATCAATTTTTCTATTAAAAAAGTAGTTATTTTCAATATGGCAAAATCAGTCAACTTATTTATAAATATTAACAAAATGTCACTATCTATCAG

mRNA sequence

TATTTGCCCAAAAAATAATAAAAAGAAAAAAGAAAAAGAAAAAGAAAAAGGAAGCATCCTTGTTAGTTTCTTCTGTAACTCAAATCTCTCTGCCTTCTTTTGTCATTTTTCTTCAGCCATGGATGAAACACTGACACTCATCACAATAATCCTTAATTAATTCTTCAATATTTTCAACTCCATCTTCGAAATTGCCTCTCACTTTCCCATTTCCATCCATTTATATACATCCCATCACTCTCACTTCAATTTTCCATTCATTTCATTTTCTGCTCTGTTTTTCTTAATTCCCCTGTTCTTCAAGCTGCTTCAATGGCGGCGGCTACTCTCTCATTTTCCCCTTTTCCTTTCAATCGAGATGGATCCACTAGAATGCTCAAGGATTTTCTTCACGAAACCAATGCAAATGGAATCGCATCTTCTAAAACTAAACCGGCGTCGTTTAAGGCTCTGGCTATCCACGCCGTCGTCTCCGCCGTGAAGAGGATCTCGTTTCCGTCTGTGAAATCGCCAAGGATTTTCCCCAGAAGCCTTTCGCGGAGGCTGTTGAGGAAAACGGAGAGAAATGAGAGAGAAATCGGAGGCGATTTCGTTGTTAAGATTAAGGACATCATACGGTGGAAATCGTTCAGGGATTTGGTCGACGAGACGGCGGCGGCTCCTTCGCTTGATTTCGCCGATTCGCCGGATCATTACACGGCCGCCGCTATGACTACGACGACGACGACGACGACGACTAGCAGTTATAGTTCGAGCTGGTGCGAGAGCGATTTCACGGCGGAGGATTTGCCGTCGCCGTCGTGGAGAGATTGGTCCGACGACGGTGCAGTGGGAAAAATGTATTTCCCATGTGTCGGTGAAGATTCGACGAAAACGATATTGGCACACGCAGAAAACGACAAAAAGGTAGGTGTAAATGCAGTATCAAGACGTGACGATAAAGAAGAAGAACAAAAGATATTAGACGAAAGTGCACAGTGCCTATTAAAGCACGTGAATGAAGCAATTTCATTATCAAAAAATCGCAGATTGACAGAACATGATGGGTTGGATTGGTTGCTTCTAGAATTGTTTCGACCAGAAGTTGCATATTGTCAAGACGTGGATGAACGAGCAAGAAACAATGACAAAATTAGGGCAAATAAAGGCAAAGAAGATGAAGATGGCTATGATTGGTTTTTGTCTCACAAGGGGAAGGAAACTTATATGAGAGAAATGGAGAGGGAAGGAAAATGGGAGATTTTTGGTGTTGAGGAGAAAATTGAATTAGGATTAGAAATTGAAGGGGAAATTTTGGGATGTTTGGTTGATGAAATTCTACTTGATACTTTCTAATTATCACTAGAAAAATTTTTCCTTTTATTTTTATAGATTACTTCAAAATTCAAAATCCAAATATGTTGTTACAAAAGTTACTTTATTAGTTTCATTTTTTAGAAATTAACTTGTCTTATTAATCAATTTTTCTATTAAAAAAGTAGTTATTTTCAATATGGCAAAATCAGTCAACTTATTTATAAATATTAACAAAATGTCACTATCTATCAG

Coding sequence (CDS)

ATGGCGGCGGCTACTCTCTCATTTTCCCCTTTTCCTTTCAATCGAGATGGATCCACTAGAATGCTCAAGGATTTTCTTCACGAAACCAATGCAAATGGAATCGCATCTTCTAAAACTAAACCGGCGTCGTTTAAGGCTCTGGCTATCCACGCCGTCGTCTCCGCCGTGAAGAGGATCTCGTTTCCGTCTGTGAAATCGCCAAGGATTTTCCCCAGAAGCCTTTCGCGGAGGCTGTTGAGGAAAACGGAGAGAAATGAGAGAGAAATCGGAGGCGATTTCGTTGTTAAGATTAAGGACATCATACGGTGGAAATCGTTCAGGGATTTGGTCGACGAGACGGCGGCGGCTCCTTCGCTTGATTTCGCCGATTCGCCGGATCATTACACGGCCGCCGCTATGACTACGACGACGACGACGACGACGACTAGCAGTTATAGTTCGAGCTGGTGCGAGAGCGATTTCACGGCGGAGGATTTGCCGTCGCCGTCGTGGAGAGATTGGTCCGACGACGGTGCAGTGGGAAAAATGTATTTCCCATGTGTCGGTGAAGATTCGACGAAAACGATATTGGCACACGCAGAAAACGACAAAAAGGTAGGTGTAAATGCAGTATCAAGACGTGACGATAAAGAAGAAGAACAAAAGATATTAGACGAAAGTGCACAGTGCCTATTAAAGCACGTGAATGAAGCAATTTCATTATCAAAAAATCGCAGATTGACAGAACATGATGGGTTGGATTGGTTGCTTCTAGAATTGTTTCGACCAGAAGTTGCATATTGTCAAGACGTGGATGAACGAGCAAGAAACAATGACAAAATTAGGGCAAATAAAGGCAAAGAAGATGAAGATGGCTATGATTGGTTTTTGTCTCACAAGGGGAAGGAAACTTATATGAGAGAAATGGAGAGGGAAGGAAAATGGGAGATTTTTGGTGTTGAGGAGAAAATTGAATTAGGATTAGAAATTGAAGGGGAAATTTTGGGATGTTTGGTTGATGAAATTCTACTTGATACTTTCTAA

Protein sequence

MAAATLSFSPFPFNRDGSTRMLKDFLHETNANGIASSKTKPASFKALAIHAVVSAVKRISFPSVKSPRIFPRSLSRRLLRKTERNEREIGGDFVVKIKDIIRWKSFRDLVDETAAAPSLDFADSPDHYTAAAMTTTTTTTTTSSYSSSWCESDFTAEDLPSPSWRDWSDDGAVGKMYFPCVGEDSTKTILAHAENDKKVGVNAVSRRDDKEEEQKILDESAQCLLKHVNEAISLSKNRRLTEHDGLDWLLLELFRPEVAYCQDVDERARNNDKIRANKGKEDEDGYDWFLSHKGKETYMREMEREGKWEIFGVEEKIELGLEIEGEILGCLVDEILLDTF

Homology

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BLAST of Lsi05G019990 vs. TrEMBL
Match: A0A0A0L6C4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G124790 PE=4 SV=1)

HSP 1 Score: 485.0 bits (1247), Expect = 7.7e-134
Identity = 264/347 (76.08%), Postives = 292/347 (84.15%), Query Frame = 1


Query: 1   MAAATLSFSPFPFNRDGSTRMLKDFLHETNANGIASSKTKPASFKALAIHAVVSAVKRIS 60
           MAA TLSF PFP NR+  TRMLKDFLHETN NG+AS K KP SFKALA HAVV+AVKRIS
Sbjct: 1   MAAPTLSFPPFPLNREAPTRMLKDFLHETNPNGLASPKPKPTSFKALAFHAVVAAVKRIS 60

Query: 61  FPSVKSPRIFPRSLSRRLLRKTERNEREIGGDFVVKIKDIIRWKSFRDLVDE-TAAAPSL 120
            PSVKSPRIFPRSLSRRLL+KTER+ERE GGDFVVKIKDIIRWKSFRDL+DE TAAAP L
Sbjct: 61  LPSVKSPRIFPRSLSRRLLKKTERDERETGGDFVVKIKDIIRWKSFRDLIDETTAAAPPL 120

Query: 121 DFADSPDH--YTAAAMTTTTTTTTT---SSYSSSWCESDFTAEDLPSPSWRDWSDDGAVG 180
           DFA+SPD   YTAAA TTTTTTTTT   SS SSSWCESDFTAEDL SPSWRDWSDDG +G
Sbjct: 121 DFAESPDRYTYTAAATTTTTTTTTTTTSSSKSSSWCESDFTAEDLASPSWRDWSDDGTMG 180

Query: 181 KMYFPCVGEDSTKTILAHAENDKKVGVNAVSRRDDKEEEQKILDESAQCLLKHVNEAISL 240
           KMYFPCVGEDS +T  A+A+ND++  VNA+  R+D  EEQ++LDES + LL+ V  AISL
Sbjct: 181 KMYFPCVGEDSNETTAAYAQNDEE--VNALLIRED-NEEQEVLDESTRRLLEQVKGAISL 240

Query: 241 SKNRRLTEHDGLDWLLLELFRPEVAYCQDVDERARNND-KIRANKGKEDEDGYDWFLSHK 300
           SK+ RL E  GLDWL+ ELFR E+A  QDVDER RN+D +IR   GK+DE   DWFLSHK
Sbjct: 241 SKSCRLVERCGLDWLIRELFRRELADVQDVDERVRNDDRRIRVKNGKDDEYVCDWFLSHK 300

Query: 301 GKETYMREMEREGKWEIFGVEEKIELGLEIEGEILGCLVDEILLDTF 341
           GKE+Y+REMEREGKWEIFGV+EKIELGLEIEGEILGCLVDEILLD F
Sbjct: 301 GKESYVREMEREGKWEIFGVDEKIELGLEIEGEILGCLVDEILLDIF 344

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BLAST of Lsi05G019990 vs. TrEMBL
Match: A0A0D2QYB6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G156200 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.8e-29
Identity = 123/373 (32.98%), Postives = 182/373 (48.79%), Query Frame = 1


Query: 20  RMLKDFLHET----NANGIAS----------------------SKTKPASFKALAIHAVV 79
           RMLKDF+H+     ++NG  S                      S++K AS    A  A++
Sbjct: 8   RMLKDFIHDDPNSCSSNGFKSFPRKSTQNSIIFRENPNQKLQRSRSKAASATISAFQAMI 67

Query: 80  SAVKRISFPSVKSPRIFPRSLSRRLLRKTERNEREIGGDFVVKIKDIIRWKSFRDLVDET 139
           + +K I F S     + PR+LSR+  ++     +E      V +KDIIRWKSFRDL++E 
Sbjct: 68  NVIKSIHFASSSPSILLPRTLSRKPSKRKISQNKEAEIKMTVTVKDIIRWKSFRDLLEE- 127

Query: 140 AAAPSLDFAD---SPDHYTAAAMTTTTTTT----TTSSYSSSWCESDFTAEDLPSPSWRD 199
             +  LDFA    SP H+     TTT + T    TTSS  SSWC+SDFT+E LPS  + +
Sbjct: 128 -KSQPLDFAPSSASPHHHCTTTTTTTGSNTPCSCTTSSNGSSWCDSDFTSEYLPSDEYGE 187

Query: 200 WSDDGAVGKMYFPCVGEDSTKTILAHAEN----DKKVGVNAVSRR-------------DD 259
              D  VGK + PCVG+D+ +T    A N     K   V    +              D+
Sbjct: 188 NEVDNMVGKKFSPCVGKDTMETTTRTAANTDMGPKHASVEEEPQHSPLSVLDFEYGGDDE 247

Query: 260 KEEEQKILDESAQCLLKHVNEAISLSKNRRLTEHDGLDWLLLELFRPEVA----YCQDVD 319
             EE   ++E A  LL  V E   L++ +    +  +D LLL+LFR E+       ++++
Sbjct: 248 DGEEANEIEEKAWELLNGVKETSPLTRYK--NNNICIDKLLLDLFREEMETKWDQTRNIE 307

Query: 320 ERARNNDKIRANKGKEDEDGYDWFLSHKGKETYMREMEREGKWEIFGVEEKIELGLEIEG 339
           E  R  + +R  K    E+  +       +E  + +MEREGKW     EE+ EL + +E 
Sbjct: 308 ELER--EMVRVAKAWICEEQNEKRGVGDKREECVGDMEREGKWRDRFHEEQEELAMGVER 367

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BLAST of Lsi05G019990 vs. TrEMBL
Match: M5XHR6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026717mg PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 7.4e-28
Identity = 118/354 (33.33%), Postives = 181/354 (51.13%), Query Frame = 1


Query: 29  TNANGIASSKTKPASFKALAIHAVVSAVKRISFPSVKSPRIFPRSLSRRLL----RKTER 88
           T  + +  S++K AS    A  ++++AVK I F +VKSP   PRSLSRRLL    + + R
Sbjct: 72  TITSKLLRSRSKAASTTISAFQSLMNAVKNIPFTTVKSPSFLPRSLSRRLLQSKFQSSSR 131

Query: 89  NEREIGGDFVVKIKDIIRWKSFRDLVDETAAAPSLDFADSPDHYTAA-----AMTTTTTT 148
            + +      V++KDIIRW SFRD  +     P LD+A SP H T +     + TTT TT
Sbjct: 132 KQSQNQVQITVRVKDIIRWTSFRD--EMLPPPPPLDYASSPLHCTTSTTITGSTTTTCTT 191

Query: 149 TTTSSYSSSWCESDFTAEDLPS--PSWRDWSDDGAVGKMYFPCVGED-------STKT-- 208
            ++SS  SSWC+SDFTAE LPS   S  D   D  VGK Y PCVG+D       +T T  
Sbjct: 192 CSSSSNGSSWCDSDFTAEFLPSLVGSNSDPHADEEVGKKYLPCVGKDFMEEEASTTGTGS 251

Query: 209 ----------ILAHAENDKKVGVNAVSRRDDKEEEQ-----------KILDESAQCLLKH 268
                     IL   E+++   V+ +  +  ++E+             + DE  +  ++ 
Sbjct: 252 CNIALGPQVEILLGDEDEQHSPVSVLDCQFGEDEDDSFTSTFDQSLANVGDEDEEMAMEL 311

Query: 269 VNEAISLSKNRRLTEHDGL-DWLLLELFRPEVAYCQDVDERARNNDKIRANKG--KEDED 328
           +N   + S +    E   L D LLL+ FR E++  ++  +     + +   K     + +
Sbjct: 312 LNYVKATSSSPDSCEEGHLEDKLLLDFFREEMSVQRNQTDDGFQWEMVSKAKAWVSGEHN 371

Query: 329 GYDWFLSHKGKETYMREMEREGKWEIFGVEEKIELGLEIEGEILGCLVDEILLD 339
             +W L HK KE  +R+M + G+W  F  E++ E+ LEIE  +   L++E+L+D
Sbjct: 372 ELEWGLEHK-KEACVRDMHKGGRWNKFEYEQE-EMALEIETAMTDFLMEELLVD 421

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BLAST of Lsi05G019990 vs. TrEMBL
Match: A0A061DUN2_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_005434 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.4e-26
Identity = 101/254 (39.76%), Postives = 130/254 (51.18%), Query Frame = 1


Query: 1   MAAATLSFSPFPFNRDGSTRMLKDFL----HETNANGIAS-------------------- 60
           MA++T+S     F  +   RMLKDFL    +  ++NG  S                    
Sbjct: 1   MASSTISRQRKHFPLERRPRMLKDFLLDDSNSCSSNGFKSFPRKTCQSIRNLIETDLNSS 60

Query: 61  ------------SKTKPASFKALAIHAVVSAVKRISFPSVKSPRIFPRSLSRRLLRKTER 120
                       S++K AS       A++ AV+ I F SVKSP I PRSLSR+L +K  +
Sbjct: 61  HAKPSYAQQLQRSRSKAASTTISTFQAMIKAVRNIHFTSVKSPSILPRSLSRKLSKKNSQ 120

Query: 121 NEREIGGDFVVKIKDIIRWKSFRDLVDETAAAPSLDFADSPDHYTAAAMTTTTTT----T 180
            E E      V++KDIIRWKS RDLV+E    P  DFA SP H T  + TTTTTT    T
Sbjct: 121 KETETRT--TVRVKDIIRWKSSRDLVEEKF--PPADFASSPHHCTTRSTTTTTTTGSKST 180

Query: 181 TTSSYSSSWCESDFTAEDLPSPSWRDWSDDGAVGKMYFPCVGEDSTKTILAHAENDKKVG 215
             SS SSSWC+SDFT+E LPS  + +   D  VGK + PCVG+D  +T    A N   VG
Sbjct: 181 PCSSNSSSWCDSDFTSEYLPSEEYHESEVD--VGKKFLPCVGKDPMETTTGLAAN-TAVG 240

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BLAST of Lsi05G019990 vs. TrEMBL
Match: A0A067K104_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14469 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.4e-26
Identity = 114/350 (32.57%), Postives = 174/350 (49.71%), Query Frame = 1


Query: 48  AIHAVVSAVKRISFPSVKSPRIFPRSLSRRLLRKTERNER----------EIGGDFVVKI 107
           A H+V++A+K   F SVK+P IFPRS+SRRL +K+  + R          E      V I
Sbjct: 3   AFHSVINALKNFQFTSVKAPSIFPRSISRRLSKKSSASSRDTERASESKLESEVKITVTI 62

Query: 108 KDIIRWKSFRDLVDETAAAPSLDFADSPDHYTAAAMTTTTTTTTTSSYSSSWCESDFTAE 167
           KDIIRWKSFRDL++E +  P LD A SP H T  + T + TTT  SS  SSWC+SDFT+E
Sbjct: 63  KDIIRWKSFRDLMEEKS--PPLDLASSPHHCTTTS-TASATTTPCSSNGSSWCDSDFTSE 122

Query: 168 DLP--SPSWRDWSDDGA--VGKMYFPCVGE---DSTKTILAHAEN--------------- 227
            LP  + +  ++ ++ A  VGK   PCVGE   ++ K +   AE                
Sbjct: 123 YLPFWNGNSEEYGENEAMEVGKKDLPCVGEATIEAEKIVGPKAEEKQLSSPISVIDIEFE 182

Query: 228 ------------------------DKKVGVNAVSRRDDKEEEQKIL--DESAQCLLKHVN 287
                                   +K + VN  +  +++ E   I   +E A  LL +  
Sbjct: 183 GDEDSSSIYDESNANVESKYPFNLEKWMAVNENTSSEEETETNTINGEEEEAWQLLNYFK 242

Query: 288 EAISLSKNRRLTEHDGLDWLLLELFRPEVAYCQDVDERARNNDKIRANKGKEDEDGYD-W 339
           +  S+ + R          L+ + FR E+       +      ++  ++ KE  +G D  
Sbjct: 243 QTSSMKEER----------LVFDFFREELCRKTYETKNEGFECEMLISRVKEWINGEDRM 302

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BLAST of Lsi05G019990 vs. TAIR10
Match: AT4G00770.1 (AT4G00770.1 unknown protein)

HSP 1 Score: 75.1 bits (183), Expect = 9.3e-14
Identity = 75/198 (37.88%), Postives = 105/198 (53.03%), Query Frame = 1


Query: 19  TRMLKDFLHETN----ANGIASSKTK---------PASFKALAIHAVVSAVKRISFPSVK 78
           +RMLKD L E +    +NG  S   +         P   ++ A+ AV++A+K +   ++K
Sbjct: 5   SRMLKDCLLEDSNSCSSNGFKSIPRRHPLNPFPMIPKRKQSNALQAVINAIKNLHSNTIK 64

Query: 79  SPR--IFPRSLSRRLLRKTE-RNEREIGGDFVVKIKDIIRWKSFRDLVDETAAAPSLDFA 138
           S    I PRSLSRRL  K +  N+  I    V+++KDI+RW S +DL ++ +        
Sbjct: 65  SAPSGILPRSLSRRLATKNKAENQASIT---VIRVKDIVRWHSSKDLHEDISHF------ 124

Query: 139 DSPDHYTAAAMTTTTTTTTTSSYS-SSWCESDFTAEDLPSPSW----RDWSDDGAVGKMY 195
             P  YT    TTTT ++TTS  S SSW + DFT+E LPS SW     +  +  +V K  
Sbjct: 125 -EPHQYTTKNTTTTTGSSTTSGTSCSSWSDLDFTSEFLPS-SWGSNVEECGEKQSV-KNN 184

[Close]

BLAST of Lsi05G019990 vs. NCBI nr
Match: gi|659075368|ref|XP_008438108.1| (PREDICTED: uncharacterized protein LOC103483313 isoform X1 [Cucumis melo])

HSP 1 Score: 496.1 bits (1276), Expect = 4.8e-137
Identity = 264/344 (76.74%), Postives = 293/344 (85.17%), Query Frame = 1


Query: 1   MAAATLSFSPFPFNRDGSTRMLKDFLHETNANGIASSKTKPASFKALAIHAVVSAVKRIS 60
           MAA +LSF PFP NR+G TRMLKDFLHETN NGIASSK KP SFKALA HAVV+AVKRIS
Sbjct: 1   MAAPSLSFPPFPLNREGPTRMLKDFLHETNPNGIASSKPKPTSFKALAFHAVVAAVKRIS 60

Query: 61  FPSVKSPRIFPRSLSRRLLRKTERNEREIGGDFVVKIKDIIRWKSFRDLVDE-TAAAPSL 120
           FPSVKSPRIFPRSLSRRLLRKTER+ERE GGDFVVKIKDIIRWKSFRDL+DE TAAAP L
Sbjct: 61  FPSVKSPRIFPRSLSRRLLRKTERDERETGGDFVVKIKDIIRWKSFRDLIDETTAAAPPL 120

Query: 121 DFADSPDHYT---AAAMTTTTTTTTTSSYSSSWCESDFTAEDLPSPSWRDWSDDGAVGKM 180
           DFA+SPD YT   AA  TTTTTTTT+SS SSSWCESDFTAEDLPSPSWRDWSDDG +GKM
Sbjct: 121 DFAESPDRYTYTAAATTTTTTTTTTSSSKSSSWCESDFTAEDLPSPSWRDWSDDGTIGKM 180

Query: 181 YFPCVGEDSTKTILAHAENDKKVGVNAVSRRDDKEEEQKILDESAQCLLKHVNEAISLSK 240
           YF CVGEDST+T  AHA+NDK+VG+NA+SRR+DK EEQ++LDES + LL+ V   ISLS+
Sbjct: 181 YFRCVGEDSTETTAAHAKNDKEVGINALSRREDK-EEQEVLDESTRRLLEQVKGVISLSE 240

Query: 241 NRRLTEHDGLDWLLLELFRPEVAYCQDVDERARNNDKIRANKGKEDEDGYDWFLSHKGKE 300
           + RL EH GLD LL ELFR ++A  QD D      D+IR   GK+ E  YDWFLSHKGKE
Sbjct: 241 SCRLAEHCGLDGLLRELFRRDLASFQDDD------DRIRMKNGKDGEYVYDWFLSHKGKE 300

Query: 301 TYMREMEREGKWEIFGVEEKIELGLEIEGEILGCLVDEILLDTF 341
           +Y+REMEREGKWEIFGV+EKI+LGLEIEGE+LGCLVDEILLD F
Sbjct: 301 SYVREMEREGKWEIFGVDEKIDLGLEIEGEVLGCLVDEILLDIF 337

[Close]

BLAST of Lsi05G019990 vs. NCBI nr
Match: gi|659075370|ref|XP_008438109.1| (PREDICTED: uncharacterized protein LOC103483313 isoform X2 [Cucumis melo])

HSP 1 Score: 487.6 bits (1254), Expect = 1.7e-134
Identity = 263/344 (76.45%), Postives = 291/344 (84.59%), Query Frame = 1


Query: 1   MAAATLSFSPFPFNRDGSTRMLKDFLHETNANGIASSKTKPASFKALAIHAVVSAVKRIS 60
           MAA +LSF PFP NR+G TRMLKDFLHETN NGIASSK KP SFKALA HAVV+AVKRIS
Sbjct: 1   MAAPSLSFPPFPLNREGPTRMLKDFLHETNPNGIASSKPKPTSFKALAFHAVVAAVKRIS 60

Query: 61  FPSVKSPRIFPRSLSRRLLRKTERNEREIGGDFVVKIKDIIRWKSFRDLVDE-TAAAPSL 120
           FPSVKSPRIFPRSLSRRLLRKTER+ERE GGDFVVKIKDIIRWKSFRDL+DE TAAAP L
Sbjct: 61  FPSVKSPRIFPRSLSRRLLRKTERDERETGGDFVVKIKDIIRWKSFRDLIDETTAAAPPL 120

Query: 121 DFADSPDHYT---AAAMTTTTTTTTTSSYSSSWCESDFTAEDLPSPSWRDWSDDGAVGKM 180
           DFA+SPD YT   AA  TTTTTTTT+SS SSSWCESDFTAEDLPSPSWRDWSDDG +GKM
Sbjct: 121 DFAESPDRYTYTAAATTTTTTTTTTSSSKSSSWCESDFTAEDLPSPSWRDWSDDGTIGKM 180

Query: 181 YFPCVGEDSTKTILAHAENDKKVGVNAVSRRDDKEEEQKILDESAQCLLKHVNEAISLSK 240
           YF CVGEDST+T  AHA+NDK+  VNA+SRR+DK EEQ++LDES + LL+ V   ISLS+
Sbjct: 181 YFRCVGEDSTETTAAHAKNDKE--VNALSRREDK-EEQEVLDESTRRLLEQVKGVISLSE 240

Query: 241 NRRLTEHDGLDWLLLELFRPEVAYCQDVDERARNNDKIRANKGKEDEDGYDWFLSHKGKE 300
           + RL EH GLD LL ELFR ++A  QD D      D+IR   GK+ E  YDWFLSHKGKE
Sbjct: 241 SCRLAEHCGLDGLLRELFRRDLASFQDDD------DRIRMKNGKDGEYVYDWFLSHKGKE 300

Query: 301 TYMREMEREGKWEIFGVEEKIELGLEIEGEILGCLVDEILLDTF 341
           +Y+REMEREGKWEIFGV+EKI+LGLEIEGE+LGCLVDEILLD F
Sbjct: 301 SYVREMEREGKWEIFGVDEKIDLGLEIEGEVLGCLVDEILLDIF 335

[Close]

BLAST of Lsi05G019990 vs. NCBI nr
Match: gi|449432203|ref|XP_004133889.1| (PREDICTED: uncharacterized protein LOC101208043 [Cucumis sativus])

HSP 1 Score: 485.0 bits (1247), Expect = 1.1e-133
Identity = 264/347 (76.08%), Postives = 292/347 (84.15%), Query Frame = 1


Query: 1   MAAATLSFSPFPFNRDGSTRMLKDFLHETNANGIASSKTKPASFKALAIHAVVSAVKRIS 60
           MAA TLSF PFP NR+  TRMLKDFLHETN NG+AS K KP SFKALA HAVV+AVKRIS
Sbjct: 1   MAAPTLSFPPFPLNREAPTRMLKDFLHETNPNGLASPKPKPTSFKALAFHAVVAAVKRIS 60

Query: 61  FPSVKSPRIFPRSLSRRLLRKTERNEREIGGDFVVKIKDIIRWKSFRDLVDE-TAAAPSL 120
            PSVKSPRIFPRSLSRRLL+KTER+ERE GGDFVVKIKDIIRWKSFRDL+DE TAAAP L
Sbjct: 61  LPSVKSPRIFPRSLSRRLLKKTERDERETGGDFVVKIKDIIRWKSFRDLIDETTAAAPPL 120

Query: 121 DFADSPDH--YTAAAMTTTTTTTTT---SSYSSSWCESDFTAEDLPSPSWRDWSDDGAVG 180
           DFA+SPD   YTAAA TTTTTTTTT   SS SSSWCESDFTAEDL SPSWRDWSDDG +G
Sbjct: 121 DFAESPDRYTYTAAATTTTTTTTTTTTSSSKSSSWCESDFTAEDLASPSWRDWSDDGTMG 180

Query: 181 KMYFPCVGEDSTKTILAHAENDKKVGVNAVSRRDDKEEEQKILDESAQCLLKHVNEAISL 240
           KMYFPCVGEDS +T  A+A+ND++  VNA+  R+D  EEQ++LDES + LL+ V  AISL
Sbjct: 181 KMYFPCVGEDSNETTAAYAQNDEE--VNALLIRED-NEEQEVLDESTRRLLEQVKGAISL 240

Query: 241 SKNRRLTEHDGLDWLLLELFRPEVAYCQDVDERARNND-KIRANKGKEDEDGYDWFLSHK 300
           SK+ RL E  GLDWL+ ELFR E+A  QDVDER RN+D +IR   GK+DE   DWFLSHK
Sbjct: 241 SKSCRLVERCGLDWLIRELFRRELADVQDVDERVRNDDRRIRVKNGKDDEYVCDWFLSHK 300

Query: 301 GKETYMREMEREGKWEIFGVEEKIELGLEIEGEILGCLVDEILLDTF 341
           GKE+Y+REMEREGKWEIFGV+EKIELGLEIEGEILGCLVDEILLD F
Sbjct: 301 GKESYVREMEREGKWEIFGVDEKIELGLEIEGEILGCLVDEILLDIF 344

[Close]

BLAST of Lsi05G019990 vs. NCBI nr
Match: gi|823150658|ref|XP_012475152.1| (PREDICTED: uncharacterized protein LOC105791579 [Gossypium raimondii])

HSP 1 Score: 138.3 bits (347), Expect = 2.5e-29
Identity = 123/373 (32.98%), Postives = 182/373 (48.79%), Query Frame = 1


Query: 20  RMLKDFLHET----NANGIAS----------------------SKTKPASFKALAIHAVV 79
           RMLKDF+H+     ++NG  S                      S++K AS    A  A++
Sbjct: 8   RMLKDFIHDDPNSCSSNGFKSFPRKSTQNSIIFRENPNQKLQRSRSKAASATISAFQAMI 67

Query: 80  SAVKRISFPSVKSPRIFPRSLSRRLLRKTERNEREIGGDFVVKIKDIIRWKSFRDLVDET 139
           + +K I F S     + PR+LSR+  ++     +E      V +KDIIRWKSFRDL++E 
Sbjct: 68  NVIKSIHFASSSPSILLPRTLSRKPSKRKISQNKEAEIKMTVTVKDIIRWKSFRDLLEE- 127

Query: 140 AAAPSLDFAD---SPDHYTAAAMTTTTTTT----TTSSYSSSWCESDFTAEDLPSPSWRD 199
             +  LDFA    SP H+     TTT + T    TTSS  SSWC+SDFT+E LPS  + +
Sbjct: 128 -KSQPLDFAPSSASPHHHCTTTTTTTGSNTPCSCTTSSNGSSWCDSDFTSEYLPSDEYGE 187

Query: 200 WSDDGAVGKMYFPCVGEDSTKTILAHAEN----DKKVGVNAVSRR-------------DD 259
              D  VGK + PCVG+D+ +T    A N     K   V    +              D+
Sbjct: 188 NEVDNMVGKKFSPCVGKDTMETTTRTAANTDMGPKHASVEEEPQHSPLSVLDFEYGGDDE 247

Query: 260 KEEEQKILDESAQCLLKHVNEAISLSKNRRLTEHDGLDWLLLELFRPEVA----YCQDVD 319
             EE   ++E A  LL  V E   L++ +    +  +D LLL+LFR E+       ++++
Sbjct: 248 DGEEANEIEEKAWELLNGVKETSPLTRYK--NNNICIDKLLLDLFREEMETKWDQTRNIE 307

Query: 320 ERARNNDKIRANKGKEDEDGYDWFLSHKGKETYMREMEREGKWEIFGVEEKIELGLEIEG 339
           E  R  + +R  K    E+  +       +E  + +MEREGKW     EE+ EL + +E 
Sbjct: 308 ELER--EMVRVAKAWICEEQNEKRGVGDKREECVGDMEREGKWRDRFHEEQEELAMGVER 367

[Close]

BLAST of Lsi05G019990 vs. NCBI nr
Match: gi|802697667|ref|XP_012083497.1| (PREDICTED: uncharacterized protein LOC105643062 [Jatropha curcas])

HSP 1 Score: 136.3 bits (342), Expect = 9.7e-29
Identity = 130/409 (31.78%), Postives = 193/409 (47.19%), Query Frame = 1


Query: 14  NRDGSTRMLKDFL----HETNANGIASSKTKPA---------------------SFKALA 73
           N +   RMLKDFL    H  ++ G  S  TKPA                     S    A
Sbjct: 11  NTNFKKRMLKDFLVDDLHTCSSTGFKSIPTKPADSSIQTVFQNDLSTGKLFRSRSTTMFA 70

Query: 74  IHAVVSAVKRISFPSVKSPRIFPRSLSRRLLRKTERNER----------EIGGDFVVKIK 133
            H+V++A+K   F SVK+P IFPRS+SRRL +K+  + R          E      V IK
Sbjct: 71  FHSVINALKNFQFTSVKAPSIFPRSISRRLSKKSSASSRDTERASESKLESEVKITVTIK 130

Query: 134 DIIRWKSFRDLVDETAAAPSLDFADSPDHYTAAAMTTTTTTTTTSSYSSSWCESDFTAED 193
           DIIRWKSFRDL++E +  P LD A SP H T  + T + TTT  SS  SSWC+SDFT+E 
Sbjct: 131 DIIRWKSFRDLMEEKS--PPLDLASSPHHCTTTS-TASATTTPCSSNGSSWCDSDFTSEY 190

Query: 194 LP--SPSWRDWSDDGA--VGKMYFPCVGE---DSTKTILAHAEN---------------- 253
           LP  + +  ++ ++ A  VGK   PCVGE   ++ K +   AE                 
Sbjct: 191 LPFWNGNSEEYGENEAMEVGKKDLPCVGEATIEAEKIVGPKAEEKQLSSPISVIDIEFEG 250

Query: 254 -----------------------DKKVGVNAVSRRDDKEEEQKIL--DESAQCLLKHVNE 313
                                  +K + VN  +  +++ E   I   +E A  LL +  +
Sbjct: 251 DEDSSSIYDESNANVESKYPFNLEKWMAVNENTSSEEETETNTINGEEEEAWQLLNYFKQ 310

Query: 314 AISLSKNRRLTEHDGLDWLLLELFRPEVAYCQDVDERARNNDKIRANKGKEDEDGYD-WF 339
             S+ + R          L+ + FR E+       +      ++  ++ KE  +G D  +
Sbjct: 311 TSSMKEER----------LVFDFFREELCRKTYETKNEGFECEMLISRVKEWINGEDRMW 370

The following BLAST results are available for this feature:

BLAST of Lsi05G019990 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi05G019990 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6C4_CUCSA	7.7e-134	76.08	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G124790 PE=4 SV=1	[more]
A0A0D2QYB6_GOSRA	1.8e-29	32.98	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G156200 PE=4 SV=1	[more]
M5XHR6_PRUPE	7.4e-28	33.33	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026717mg PE=4 SV=1	[more]
A0A061DUN2_THECC	2.4e-26	39.76	Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_005434 PE=4 SV=1	[more]
A0A067K104_JATCU	2.4e-26	32.57	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14469 PE=4 SV=1	[more]

BLAST of Lsi05G019990 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G00770.1	9.3e-14	37.88	unknown protein	[more]

BLAST of Lsi05G019990 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659075368\|ref\|XP_008438108.1\|	4.8e-137	76.74	PREDICTED: uncharacterized protein LOC103483313 isoform X1 [Cucumis melo]	[more]
gi\|659075370\|ref\|XP_008438109.1\|	1.7e-134	76.45	PREDICTED: uncharacterized protein LOC103483313 isoform X2 [Cucumis melo]	[more]
gi\|449432203\|ref\|XP_004133889.1\|	1.1e-133	76.08	PREDICTED: uncharacterized protein LOC101208043 [Cucumis sativus]	[more]
gi\|823150658\|ref\|XP_012475152.1\|	2.5e-29	32.98	PREDICTED: uncharacterized protein LOC105791579 [Gossypium raimondii]	[more]
gi\|802697667\|ref\|XP_012083497.1\|	9.7e-29	31.78	PREDICTED: uncharacterized protein LOC105643062 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0031167	rRNA methylation
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0000179	rRNA (adenine-N6,N6-)-dimethyltransferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G019990.1	Lsi05G019990.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33623	FAMILY NOT NAMED	coord: 48..215 score: 1.2
None	No IPR available	PANTHER	PTHR33623:SF4	SUBFAMILY NOT NAMED	coord: 48..215 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G019990	Csa3G124790	Cucumber (Chinese Long) v2	culsiB209
Lsi05G019990	CSPI03G09200	Wild cucumber (PI 183967)	cpilsiB207
Lsi05G019990	Cucsa.257990	Cucumber (Gy14) v1	cgylsiB415
Lsi05G019990	CmaCh06G011110	Cucurbita maxima (Rimu)	cmalsiB764
Lsi05G019990	CmoCh06G011380	Cucurbita moschata (Rifu)	cmolsiB757
Lsi05G019990	Cla021273	Watermelon (97103) v1	lsiwmB365
Lsi05G019990	MELO3C006152	Melon (DHL92) v3.5.1	lsimeB378
Lsi05G019990	ClCG05G001920	Watermelon (Charleston Gray)	lsiwcgB335
Lsi05G019990	MELO3C006152.2	Melon (DHL92) v3.6.1	lsimedB396
Lsi05G019990	Cla97C05G082360	Watermelon (97103) v2	lsiwmbB333
Lsi05G019990	Bhi01G000225	Wax gourd	lsiwgoB435
Lsi05G019990	Cp4.1LG08g01710	Cucurbita pepo (Zucchini)	cpelsiB714
Lsi05G019990	CsGy3G009280	Cucumber (Gy14) v2	cgyblsiB196
Lsi05G019990	Carg23883	Silver-seed gourd	carlsiB442
Lsi05G019990	CsaV3_3G009320	Cucumber (Chinese Long) v3	cuclsiB228

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G019990	Bottle gourd (USVL1VR-Ls)	lsilsiB007
Lsi05G019990	Bottle gourd (USVL1VR-Ls)	lsilsiB160
Lsi05G019990	Cucumber (Gy14) v1	cgylsiB585
Lsi05G019990	Cucurbita maxima (Rimu)	cmalsiB245
Lsi05G019990	Cucurbita maxima (Rimu)	cmalsiB583
Lsi05G019990	Cucurbita moschata (Rifu)	cmolsiB233
Lsi05G019990	Cucurbita moschata (Rifu)	cmolsiB557
Lsi05G019990	Cucurbita pepo (Zucchini)	cpelsiB271
Lsi05G019990	Cucurbita pepo (Zucchini)	cpelsiB506
Lsi05G019990	Wild cucumber (PI 183967)	cpilsiB205
Lsi05G019990	Wild cucumber (PI 183967)	cpilsiB470
Lsi05G019990	Cucumber (Chinese Long) v2	culsiB462
Lsi05G019990	Melon (DHL92) v3.5.1	lsimeB375
Lsi05G019990	Watermelon (Charleston Gray)	lsiwcgB334
Lsi05G019990	Watermelon (Charleston Gray)	lsiwcgB346
Lsi05G019990	Watermelon (97103) v1	lsiwmB364
Lsi05G019990	Watermelon (97103) v1	lsiwmB385
Lsi05G019990	Cucumber (Gy14) v2	cgyblsiB430
Lsi05G019990	Silver-seed gourd	carlsiB565
Lsi05G019990	Cucumber (Chinese Long) v3	cuclsiB227
Lsi05G019990	Cucumber (Chinese Long) v3	cuclsiB491
Lsi05G019990	Watermelon (97103) v2	lsiwmbB345