Lsi05G018950 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi05G018950
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionAcyl carrier protein
Locationchr05 : 26098868 .. 26100982 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAATAAAAAAAATTGACAAAGTTCATGATCAAAATGATATTAAAAAAAAAATTCCTAAAGCACGTGCTTTGCGCGTGCCATTTACCTTCCCTTCAGACACTACACTGAATAATTAATAGTTCCTAGTTCGACTAATTTGTGGAGTCACCGTAAGAAGAGAAAAGTTAGAGAAAAATGGCGCTGAGGGCAGCCGTTCTTCGCCATCTTCGAGTTCCAGTCCAATTCTTTGCCCTAGCTCGCCGGGAATGCCAGCCGCCGCTGTGCTCCGGTGGATCTCTCCGGCTATTTTCATCTCACGACGATCACTTGACAAAGGACGAGGTCATTGAGAGAGTTCTCTCGGTTATCAAGTGCCACCCGAAAGTCGATCCCTCCAAGGTGATTCGATCTAATCCCCTCCTTTTCGATTGTTTTTTCAGCTTATTGAGTTAGTTTTTATAGACGGGTGAAACAAATTTTGCTGATTTAGGAAATGCGGGAAGAATAGGTTGGAAGTGTAGAAAATCTTGTACACCGATTCAATGATTTTTATTTCTGATATGCAATTGGGTTTTAGGGCTTTTAACATTTCTTCGGCGAATTCCAATTCGTTTGCTTGGTTCCTTTTCCCGTGCTTTATCTATGCGAATTGGTAATCGGGATCCTATTTGATTTTCTCTTTACAAAGTAATTTGAGAGAGAAAACATAGCCCCCCTCAAACCATAAGTAACGACGATTTATTCCATGATAAAGTGTTAATCTAGACAGTGGCTCTTAAGAATTTCTGCTAAAATGTCATTTCCCCTGTATATTTGATTCGGTATCTTTTGGGATTTTTACTTATTTCGAGTTTTGGTCGATTGCCGTATTGCATCCAATATCTCTCCCTTCGTTTATGTGGGTTGCTTGGCTGGGTTCACTAGCGCCTAACAATTGACACCTACACTTTAGGATTCGTGAAAGGTTTCTTGTCTTGTACATTTTGGATAAAATTGATGATAGATAACAGATCATAATTTGACAAAGTTGAAGGTGTTTAGTTCTATTTTAAAGGGTACATAGCTCACAAGACATGAAAGCGTGGCTTTTCATCAATATTTATATATAAATTTTTATTTATTTATCTTTTTAGTTTTGACACTGTAGTGATCTTCTCCTTCACTTTATTGCACATAAGCATAAAGTGTCTCTCTCTTTCTTCCCTCTTTTGCTTCATTTTTTTTTCTCAGCCAAGATAACATCTCTTCTTCTTCTTTATGACTAATCTTATATATTGTGATGTCATTTACTCAAAAAGACGTATTTTCTCGTCTCACTTGTCCTAACCGTTATTTTGCAGCTGGCTCATACACTCCATTGAACTTTTTCTTCGTGCACTTTTAAGAACTCTGGTTTTTGGTCTTTTGGTCACTGGACTGAGATTTACCTCCTAATGACTTGACTTCGTCATGCTGTATTTCTAACATATTCCCGAAAATCAGGCTATGCTATAGTAGATATTACACACTATTTTTAAATATTTCTAAGAACTTGGCTATGCTATAGTTAATAACTTAACTTTACATACATTTTTGAGCCAATCTTAATGGTTAGGGATGATTGAGGACAGCTAAAATATGTCCAGTTTCCACTATTATTTTATGGTCACTTGCAAGCAGCATCTCTTTCTTGCTAAACTTCAAATTATAGCTTGGCTGAAATGTTGCTGCGATTATCGAGTTTTGTGCTATTTATTTGTAGGTGAGCCCTGATGTTCATTTCCAGAAAGATTTGGGTTTAGACAGCTTGGACACTGTGGAGATAGTAATGGCCTTGGAAGAGGAATTCAAGCTAGAGATACCAGACAAGGAGGCTGATAAAATAGATTCCTGTGATCTTGCAATTGAGTACGTATACAACCATCCAATGGCTAGTTGACAGAGTACTAGCATCTTTCTCTTTATTTATTTTTTGGTATTTTTGGAGTATGTTATTCAGTGAAAGAATTTTCATCTCAACATTGTTCTTTGTACCGTTCTTGGGTGTTTGTTGAAAGTCGCAATCTTTTACACTGTGATGGAAAATAATTGTAACTGCTTGCTATTCGTGTTGCTATAAATTTTCAAGGCCTATAATGGTTCTACTCTTGCTA

mRNA sequence

AAAAAAATAAAAAAAATTGACAAAGTTCATGATCAAAATGATATTAAAAAAAAAATTCCTAAAGCACGTGCTTTGCGCGTGCCATTTACCTTCCCTTCAGACACTACACTGAATAATTAATAGTTCCTAGTTCGACTAATTTGTGGAGTCACCGTAAGAAGAGAAAAGTTAGAGAAAAATGGCGCTGAGGGCAGCCGTTCTTCGCCATCTTCGAGTTCCAGTCCAATTCTTTGCCCTAGCTCGCCGGGAATGCCAGCCGCCGCTGTGCTCCGGTGGATCTCTCCGGCTATTTTCATCTCACGACGATCACTTGACAAAGGACGAGGTCATTGAGAGAGTTCTCTCGGTTATCAAGTGCCACCCGAAAGTCGATCCCTCCAAGGTGAGCCCTGATGTTCATTTCCAGAAAGATTTGGGTTTAGACAGCTTGGACACTGTGGAGATAGTAATGGCCTTGGAAGAGGAATTCAAGCTAGAGATACCAGACAAGGAGGCTGATAAAATAGATTCCTGTGATCTTGCAATTGAGTACGTATACAACCATCCAATGGCTAGTTGACAGAGTACTAGCATCTTTCTCTTTATTTATTTTTTGGTATTTTTGGAGTATGTTATTCAGTGAAAGAATTTTCATCTCAACATTGTTCTTTGTACCGTTCTTGGGTGTTTGTTGAAAGTCGCAATCTTTTACACTGTGATGGAAAATAATTGTAACTGCTTGCTATTCGTGTTGCTATAAATTTTCAAGGCCTATAATGGTTCTACTCTTGCTA

Coding sequence (CDS)

ATGGCGCTGAGGGCAGCCGTTCTTCGCCATCTTCGAGTTCCAGTCCAATTCTTTGCCCTAGCTCGCCGGGAATGCCAGCCGCCGCTGTGCTCCGGTGGATCTCTCCGGCTATTTTCATCTCACGACGATCACTTGACAAAGGACGAGGTCATTGAGAGAGTTCTCTCGGTTATCAAGTGCCACCCGAAAGTCGATCCCTCCAAGGTGAGCCCTGATGTTCATTTCCAGAAAGATTTGGGTTTAGACAGCTTGGACACTGTGGAGATAGTAATGGCCTTGGAAGAGGAATTCAAGCTAGAGATACCAGACAAGGAGGCTGATAAAATAGATTCCTGTGATCTTGCAATTGAGTACGTATACAACCATCCAATGGCTAGTTGA

Protein sequence

MALRAAVLRHLRVPVQFFALARRECQPPLCSGGSLRLFSSHDDHLTKDEVIERVLSVIKCHPKVDPSKVSPDVHFQKDLGLDSLDTVEIVMALEEEFKLEIPDKEADKIDSCDLAIEYVYNHPMAS
Homology
[Close]
BLAST of Lsi05G018950 vs. Swiss-Prot
Match: ACPM1_ARATH (Acyl carrier protein 1, mitochondrial OS=Arabidopsis thaliana GN=MTACP1 PE=2 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.0e-44
Identity = 91/126 (72.22%), Postives = 105/126 (83.33%), Query Frame = 1 

Query: 1   MALRAAVLRHLRVPVQFFALARRECQPPLCSGGSLRLFSSHDDHLTKDEVIERVLSVIKC 60
           MALR A+LRHLRVPVQ   L     Q  +   G++R FSSHDDHL+++ V++RVL V+K 
Sbjct: 1   MALRNAILRHLRVPVQTLGLN----QSKIGFLGTIRSFSSHDDHLSREAVVDRVLDVVKS 60

Query: 61  HPKVDPSKVSPDVHFQKDLGLDSLDTVEIVMALEEEFKLEIPDKEADKIDSCDLAIEYVY 120
            PKVDPSKV+P+VHFQ DLGLDSLDTVEIVMA+EEEFKLEIPDKEADKIDSC LAIEYVY
Sbjct: 61  FPKVDPSKVTPEVHFQNDLGLDSLDTVEIVMAIEEEFKLEIPDKEADKIDSCSLAIEYVY 120

Query: 121 NHPMAS 127
           NHPM+S
Sbjct: 121 NHPMSS 122

[Close]
BLAST of Lsi05G018950 vs. Swiss-Prot
Match: ACPM2_ARATH (Acyl carrier protein 2, mitochondrial OS=Arabidopsis thaliana GN=MTACP2 PE=1 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 8.8e-28
Identity = 72/127 (56.69%), Postives = 85/127 (66.93%), Query Frame = 1 

Query: 1   MALRAAVLRHLRVPVQFFALARRECQPPLCSGGSLRLFSSH--DDHLTKDEVIERVLSVI 60
           MA R A+LR+LRV V       REC  P      LR FS       L K EV +RVLSV+
Sbjct: 1   MAARGAMLRYLRVNVNPTIQNPRECVLPFSI--LLRRFSEEVRGSFLDKSEVTDRVLSVV 60

Query: 61  KCHPKVDPSKVSPDVHFQKDLGLDSLDTVEIVMALEEEFKLEIPDKEADKIDSCDLAIEY 120
           K   KVDPSKV+P  +FQ DLGLDSLD+VE+VMALEEEF  EIPD EADKI S DLA+++
Sbjct: 61  KNFQKVDPSKVTPKANFQNDLGLDSLDSVEVVMALEEEFGFEIPDNEADKIQSIDLAVDF 120

Query: 121 VYNHPMA 126
           + +HP A
Sbjct: 121 IASHPQA 125

[Close]
BLAST of Lsi05G018950 vs. Swiss-Prot
Match: ACPM_NEUCR (Acyl carrier protein, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=nuo-12 PE=1 SV=2)

HSP 1 Score: 98.6 bits (244), Expect = 5.2e-20
Identity = 49/90 (54.44%), Postives = 62/90 (68.89%), Query Frame = 1 

Query: 38  FSSHDDHLTKDEVIERVLSVIKCHPKV-DPSKVSPDVHFQKDLGLDSLDTVEIVMALEEE 97
           F S   HL KDEV  R+  V+    KV DP  ++   HF  DLGLDSLDTVE+VMA+EEE
Sbjct: 45  FYSAGGHLKKDEVFSRIAQVLSGFDKVNDPKNITETAHFANDLGLDSLDTVEVVMAIEEE 104

Query: 98  FKLEIPDKEADKIDSCDLAIEYVYNHPMAS 127
           F +EIPDK+AD+I S D A+EY+ + P A+
Sbjct: 105 FSIEIPDKDADQIHSVDKAVEYILSQPDAN 134

[Close]
BLAST of Lsi05G018950 vs. Swiss-Prot
Match: ACPM_YEAST (Acyl carrier protein, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ACP1 PE=1 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 5.9e-16
Identity = 42/87 (48.28%), Postives = 63/87 (72.41%), Query Frame = 1 

Query: 44  HLTKDEVIERVLSVIKCHPKVDPS----KVSPDVHFQKDLGLDSLDTVEIVMALEEEFKL 103
           +L+KD+V +RV+ VIK   K  P+    ++S D  F KDLGLDSLDTVE+++A+EEEF +
Sbjct: 39  NLSKDQVSQRVIDVIKAFDKNSPNIANKQISSDTQFHKDLGLDSLDTVELLVAIEEEFDI 98

Query: 104 EIPDKEADKIDSCDLAIEYVYNHPMAS 127
           EIPDK AD++ S    ++Y+ ++P A+
Sbjct: 99  EIPDKVADELRSVGETVDYIASNPDAN 125

[Close]
BLAST of Lsi05G018950 vs. Swiss-Prot
Match: ACPM3_ARATH (Acyl carrier protein 3, mitochondrial OS=Arabidopsis thaliana GN=MTACP2 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.8e-15
Identity = 43/117 (36.75%), Postives = 70/117 (59.83%), Query Frame = 1 

Query: 3   LRAAVLRHLRVPVQFFALARRECQPPLCSGGSLRLFSSHDDHLTKDEVIERVLSVIKCHP 62
           +R+++L+HLR+ V     +  + +    S G     S       +D+++ RV+ ++K + 
Sbjct: 4   IRSSILQHLRLRVSVRPTSLLQNENGFKSIGIFNFTSEAAADGGQDQILSRVIELVKKYD 63

Query: 63  KVDPSKVSPDVHFQKDLGLDSLDTVEIVMALEEEFKLEIPDKEADKIDSCDLAIEYV 120
           K + S+V+    FQKDL LDSLD  E+VMA+EEEF +EIPD++ADK+  C     Y+
Sbjct: 64  KTNTSEVTERADFQKDLSLDSLDKTELVMAIEEEFSIEIPDEKADKLTCCGDVATYI 120

[Close]
BLAST of Lsi05G018950 vs. TrEMBL
Match: A0A0A0L986_CUCSA (Acyl carrier protein OS=Cucumis sativus GN=Csa_3G128860 PE=3 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 4.5e-63
Identity = 122/126 (96.83%), Postives = 125/126 (99.21%), Query Frame = 1 

Query: 1   MALRAAVLRHLRVPVQFFALARRECQPPLCSGGSLRLFSSHDDHLTKDEVIERVLSVIKC 60
           MALRAAVLRHLRVPVQF+ALARRECQP LCSGGSLRLFSSHDDHLTKDEVIERVLSVIKC
Sbjct: 1   MALRAAVLRHLRVPVQFYALARRECQPTLCSGGSLRLFSSHDDHLTKDEVIERVLSVIKC 60

Query: 61  HPKVDPSKVSPDVHFQKDLGLDSLDTVEIVMALEEEFKLEIPDKEADKIDSCDLAIEYVY 120
           HPKVDPSKVSPDVHF+KDLGLDSLDTVEIVMALEEEFKLEIPDKEADKIDSC+LAIEYVY
Sbjct: 61  HPKVDPSKVSPDVHFEKDLGLDSLDTVEIVMALEEEFKLEIPDKEADKIDSCNLAIEYVY 120

Query: 121 NHPMAS 127
           NHPMAS
Sbjct: 121 NHPMAS 126

[Close]
BLAST of Lsi05G018950 vs. TrEMBL
Match: A0A0A0L3Y9_CUCSA (Acyl carrier protein OS=Cucumis sativus GN=Csa_3G128850 PE=3 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.3e-54
Identity = 112/126 (88.89%), Postives = 116/126 (92.06%), Query Frame = 1 

Query: 1   MALRAAVLRHLRVPVQFFALARRECQPPLCSGGSLRLFSSHDDHLTKDEVIERVLSVIKC 60
           MALRAAVLRHLRVPV+F ALARRECQP  CSGGSLRLFSS DD  TK+EV ERVLSVIK 
Sbjct: 1   MALRAAVLRHLRVPVRFSALARRECQPTPCSGGSLRLFSSQDDQSTKEEVTERVLSVIKR 60

Query: 61  HPKVDPSKVSPDVHFQKDLGLDSLDTVEIVMALEEEFKLEIPDKEADKIDSCDLAIEYVY 120
           HPKVDPSKV+PDVHFQKDLGLDSLDTVEIVMALEEEFKLEIPD EADKIDSC+LAIEYV 
Sbjct: 61  HPKVDPSKVNPDVHFQKDLGLDSLDTVEIVMALEEEFKLEIPDNEADKIDSCNLAIEYVC 120

Query: 121 NHPMAS 127
           NHPMAS
Sbjct: 121 NHPMAS 126

[Close]
BLAST of Lsi05G018950 vs. TrEMBL
Match: A0A0A0L6L3_CUCSA (Acyl carrier protein OS=Cucumis sativus GN=Csa_3G128840 PE=3 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 3.0e-51
Identity = 108/126 (85.71%), Postives = 111/126 (88.10%), Query Frame = 1 

Query: 1   MALRAAVLRHLRVPVQFFALARRECQPPLCSGGSLRLFSSHDDHLTKDEVIERVLSVIKC 60
           MALRAAV+RHLRVPVQF ALARREC    CS   LRLFSSHDD  TK+EV ERVLSVIK 
Sbjct: 1   MALRAAVIRHLRVPVQFSALARRECHATQCSVEFLRLFSSHDDRSTKEEVTERVLSVIKR 60

Query: 61  HPKVDPSKVSPDVHFQKDLGLDSLDTVEIVMALEEEFKLEIPDKEADKIDSCDLAIEYVY 120
           H KVDPSKVSP+VHFQKDLGLDSLDTVEIVMALEEEFKLEIPD EADKI SCDLAIEYVY
Sbjct: 61  HQKVDPSKVSPNVHFQKDLGLDSLDTVEIVMALEEEFKLEIPDNEADKIASCDLAIEYVY 120

Query: 121 NHPMAS 127
           NHPMAS
Sbjct: 121 NHPMAS 126

[Close]
BLAST of Lsi05G018950 vs. TrEMBL
Match: B9GP46_POPTR (Acyl carrier protein OS=Populus trichocarpa GN=POPTR_0002s13660g PE=3 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.3e-46
Identity = 96/126 (76.19%), Postives = 109/126 (86.51%), Query Frame = 1 

Query: 1   MALRAAVLRHLRVPVQFFALARRECQPPLCSGGSLRLFSSHDDHLTKDEVIERVLSVIKC 60
           MALRAAVLRH+RVPVQ   L    C P     GS+RL SSHDDHLTK+EV++RV+SV+K 
Sbjct: 1   MALRAAVLRHIRVPVQTLRLKTNPCAP----SGSVRLMSSHDDHLTKEEVVDRVVSVVKS 60

Query: 61  HPKVDPSKVSPDVHFQKDLGLDSLDTVEIVMALEEEFKLEIPDKEADKIDSCDLAIEYVY 120
            PKVDPS+VSP+VHFQKDLGLDSLD VEIVMALEEEFKLEIPDKEADKIDSC+LAIEY++
Sbjct: 61  FPKVDPSRVSPEVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEADKIDSCNLAIEYIH 120

Query: 121 NHPMAS 127
           NHP+AS
Sbjct: 121 NHPLAS 122

[Close]
BLAST of Lsi05G018950 vs. TrEMBL
Match: W9R594_9ROSA (Acyl carrier protein OS=Morus notabilis GN=L484_023903 PE=3 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.3e-46
Identity = 100/127 (78.74%), Postives = 111/127 (87.40%), Query Frame = 1 

Query: 1   MALRAAVLRHLRVPVQFFAL-ARRECQPPLCSGGSLRLFSSHDDHLTKDEVIERVLSVIK 60
           MALR+A+LRH+RVPVQ   L ARR  QP   S   LR  SSHDDHLTK+EVI+RVLSV+K
Sbjct: 1   MALRSALLRHVRVPVQTLTLTARRFDQPLRASTTLLRWMSSHDDHLTKEEVIDRVLSVVK 60

Query: 61  CHPKVDPSKVSPDVHFQKDLGLDSLDTVEIVMALEEEFKLEIPDKEADKIDSCDLAIEYV 120
             PKVDPSKVSPDVHF+KDLGLDSLD+VEIVMALEEEFKLEIPDKEADKIDSC+LAIEY+
Sbjct: 61  SFPKVDPSKVSPDVHFEKDLGLDSLDSVEIVMALEEEFKLEIPDKEADKIDSCNLAIEYI 120

Query: 121 YNHPMAS 127
           YNHPMA+
Sbjct: 121 YNHPMAA 127

[Close]
BLAST of Lsi05G018950 vs. TAIR10
Match: AT2G44620.1 (AT2G44620.1 mitochondrial acyl carrier protein 1)

HSP 1 Score: 180.6 bits (457), Expect = 5.8e-46
Identity = 91/126 (72.22%), Postives = 105/126 (83.33%), Query Frame = 1 

Query: 1   MALRAAVLRHLRVPVQFFALARRECQPPLCSGGSLRLFSSHDDHLTKDEVIERVLSVIKC 60
           MALR A+LRHLRVPVQ   L     Q  +   G++R FSSHDDHL+++ V++RVL V+K 
Sbjct: 1   MALRNAILRHLRVPVQTLGLN----QSKIGFLGTIRSFSSHDDHLSREAVVDRVLDVVKS 60

Query: 61  HPKVDPSKVSPDVHFQKDLGLDSLDTVEIVMALEEEFKLEIPDKEADKIDSCDLAIEYVY 120
            PKVDPSKV+P+VHFQ DLGLDSLDTVEIVMA+EEEFKLEIPDKEADKIDSC LAIEYVY
Sbjct: 61  FPKVDPSKVTPEVHFQNDLGLDSLDTVEIVMAIEEEFKLEIPDKEADKIDSCSLAIEYVY 120

Query: 121 NHPMAS 127
           NHPM+S
Sbjct: 121 NHPMSS 122

[Close]
BLAST of Lsi05G018950 vs. TAIR10
Match: AT1G65290.1 (AT1G65290.1 mitochondrial acyl carrier protein 2)

HSP 1 Score: 124.4 bits (311), Expect = 5.0e-29
Identity = 72/127 (56.69%), Postives = 85/127 (66.93%), Query Frame = 1 

Query: 1   MALRAAVLRHLRVPVQFFALARRECQPPLCSGGSLRLFSSH--DDHLTKDEVIERVLSVI 60
           MA R A+LR+LRV V       REC  P      LR FS       L K EV +RVLSV+
Sbjct: 1   MAARGAMLRYLRVNVNPTIQNPRECVLPFSI--LLRRFSEEVRGSFLDKSEVTDRVLSVV 60

Query: 61  KCHPKVDPSKVSPDVHFQKDLGLDSLDTVEIVMALEEEFKLEIPDKEADKIDSCDLAIEY 120
           K   KVDPSKV+P  +FQ DLGLDSLD+VE+VMALEEEF  EIPD EADKI S DLA+++
Sbjct: 61  KNFQKVDPSKVTPKANFQNDLGLDSLDSVEVVMALEEEFGFEIPDNEADKIQSIDLAVDF 120

Query: 121 VYNHPMA 126
           + +HP A
Sbjct: 121 IASHPQA 125

[Close]
BLAST of Lsi05G018950 vs. TAIR10
Match: AT5G47630.1 (AT5G47630.1 mitochondrial acyl carrier protein 3)

HSP 1 Score: 82.4 bits (202), Expect = 2.2e-16
Identity = 43/117 (36.75%), Postives = 70/117 (59.83%), Query Frame = 1 

Query: 3   LRAAVLRHLRVPVQFFALARRECQPPLCSGGSLRLFSSHDDHLTKDEVIERVLSVIKCHP 62
           +R+++L+HLR+ V     +  + +    S G     S       +D+++ RV+ ++K + 
Sbjct: 4   IRSSILQHLRLRVSVRPTSLLQNENGFKSIGIFNFTSEAAADGGQDQILSRVIELVKKYD 63

Query: 63  KVDPSKVSPDVHFQKDLGLDSLDTVEIVMALEEEFKLEIPDKEADKIDSCDLAIEYV 120
           K + S+V+    FQKDL LDSLD  E+VMA+EEEF +EIPD++ADK+  C     Y+
Sbjct: 64  KTNTSEVTERADFQKDLSLDSLDKTELVMAIEEEFSIEIPDEKADKLTCCGDVATYI 120

[Close]
BLAST of Lsi05G018950 vs. TAIR10
Match: AT3G05020.1 (AT3G05020.1 acyl carrier protein 1)

HSP 1 Score: 58.2 bits (139), Expect = 4.4e-09
Identity = 33/74 (44.59%), Postives = 48/74 (64.86%), Query Frame = 1 

Query: 47  KDEVIERVLSVIKCHPKVDPSK-VSPDVHFQKDLGLDSLDTVEIVMALEEEFKLEIPDKE 106
           K E IE+V +++K    + P K V  +  F  DLG DSLDTVEIVM LEEEF +++ +++
Sbjct: 57  KQETIEKVSAIVKKQLSLTPDKKVVAETKFA-DLGADSLDTVEIVMGLEEEFNIQMAEEK 116

Query: 107 ADKIDSCDLAIEYV 120
           A KI + + A E +
Sbjct: 117 AQKIATVEQAAELI 129

[Close]
BLAST of Lsi05G018950 vs. TAIR10
Match: AT5G27200.1 (AT5G27200.1 acyl carrier protein 5)

HSP 1 Score: 50.4 bits (119), Expect = 9.1e-07
Identity = 30/74 (40.54%), Postives = 44/74 (59.46%), Query Frame = 1 

Query: 47  KDEVIERVLSVIKCHPKV-DPSKVSPDVHFQKDLGLDSLDTVEIVMALEEEFKLEIPDKE 106
           K E +E+V  ++K    + D  KV+    F  +LG DSLDTVEIVM LEEEF + + ++ 
Sbjct: 58  KQETVEKVSEIVKKQLSLTDDQKVTAGTKFT-ELGADSLDTVEIVMGLEEEFGITMAEER 117

Query: 107 ADKIDSCDLAIEYV 120
           A +I +   A E +
Sbjct: 118 AKEIATVQQAAELI 130

[Close]
BLAST of Lsi05G018950 vs. NCBI nr
Match: gi|778677673|ref|XP_011650836.1| (PREDICTED: acyl carrier protein 1, mitochondrial-like [Cucumis sativus])

HSP 1 Score: 248.4 bits (633), Expect = 6.5e-63
Identity = 122/126 (96.83%), Postives = 125/126 (99.21%), Query Frame = 1 

Query: 1   MALRAAVLRHLRVPVQFFALARRECQPPLCSGGSLRLFSSHDDHLTKDEVIERVLSVIKC 60
           MALRAAVLRHLRVPVQF+ALARRECQP LCSGGSLRLFSSHDDHLTKDEVIERVLSVIKC
Sbjct: 1   MALRAAVLRHLRVPVQFYALARRECQPTLCSGGSLRLFSSHDDHLTKDEVIERVLSVIKC 60

Query: 61  HPKVDPSKVSPDVHFQKDLGLDSLDTVEIVMALEEEFKLEIPDKEADKIDSCDLAIEYVY 120
           HPKVDPSKVSPDVHF+KDLGLDSLDTVEIVMALEEEFKLEIPDKEADKIDSC+LAIEYVY
Sbjct: 61  HPKVDPSKVSPDVHFEKDLGLDSLDTVEIVMALEEEFKLEIPDKEADKIDSCNLAIEYVY 120

Query: 121 NHPMAS 127
           NHPMAS
Sbjct: 121 NHPMAS 126

[Close]
BLAST of Lsi05G018950 vs. NCBI nr
Match: gi|659075680|ref|XP_008438272.1| (PREDICTED: acyl carrier protein 1, mitochondrial-like [Cucumis melo])

HSP 1 Score: 245.0 bits (624), Expect = 7.2e-62
Identity = 120/126 (95.24%), Postives = 124/126 (98.41%), Query Frame = 1 

Query: 1   MALRAAVLRHLRVPVQFFALARRECQPPLCSGGSLRLFSSHDDHLTKDEVIERVLSVIKC 60
           MALRAAVLRHLRVPVQF+ALARRECQP  CSGGSLRLFSSHDDH+TKDEVIERVLSVIKC
Sbjct: 1   MALRAAVLRHLRVPVQFYALARRECQPTPCSGGSLRLFSSHDDHMTKDEVIERVLSVIKC 60

Query: 61  HPKVDPSKVSPDVHFQKDLGLDSLDTVEIVMALEEEFKLEIPDKEADKIDSCDLAIEYVY 120
           HPKVDPSKVSPDVHF+KDLGLDSLDTVEIVMALEEEFKLEIPDKEADKIDSC+LAIEYVY
Sbjct: 61  HPKVDPSKVSPDVHFEKDLGLDSLDTVEIVMALEEEFKLEIPDKEADKIDSCNLAIEYVY 120

Query: 121 NHPMAS 127
           NHPMAS
Sbjct: 121 NHPMAS 126

[Close]
BLAST of Lsi05G018950 vs. NCBI nr
Match: gi|659075678|ref|XP_008438270.1| (PREDICTED: acyl carrier protein 1, mitochondrial-like [Cucumis melo])

HSP 1 Score: 221.9 bits (564), Expect = 6.5e-55
Identity = 113/126 (89.68%), Postives = 116/126 (92.06%), Query Frame = 1 

Query: 1   MALRAAVLRHLRVPVQFFALARRECQPPLCSGGSLRLFSSHDDHLTKDEVIERVLSVIKC 60
           MALRAAVLRHLRVPVQF ALARRECQP  CSGGSLRLFSS DD  TK+EV ERVLSVIK 
Sbjct: 1   MALRAAVLRHLRVPVQFSALARRECQPTPCSGGSLRLFSSQDDRSTKEEVTERVLSVIKR 60

Query: 61  HPKVDPSKVSPDVHFQKDLGLDSLDTVEIVMALEEEFKLEIPDKEADKIDSCDLAIEYVY 120
           HPKVDPSKV+PDVHFQKDLGLDSLDTVEIVMALEEEFKLEIPD EADKIDSC+LAIEYV 
Sbjct: 61  HPKVDPSKVTPDVHFQKDLGLDSLDTVEIVMALEEEFKLEIPDNEADKIDSCNLAIEYVC 120

Query: 121 NHPMAS 127
           NHPMAS
Sbjct: 121 NHPMAS 126

[Close]
BLAST of Lsi05G018950 vs. NCBI nr
Match: gi|778677670|ref|XP_011650835.1| (PREDICTED: acyl carrier protein 1, mitochondrial-like [Cucumis sativus])

HSP 1 Score: 220.3 bits (560), Expect = 1.9e-54
Identity = 112/126 (88.89%), Postives = 116/126 (92.06%), Query Frame = 1 

Query: 1   MALRAAVLRHLRVPVQFFALARRECQPPLCSGGSLRLFSSHDDHLTKDEVIERVLSVIKC 60
           MALRAAVLRHLRVPV+F ALARRECQP  CSGGSLRLFSS DD  TK+EV ERVLSVIK 
Sbjct: 1   MALRAAVLRHLRVPVRFSALARRECQPTPCSGGSLRLFSSQDDQSTKEEVTERVLSVIKR 60

Query: 61  HPKVDPSKVSPDVHFQKDLGLDSLDTVEIVMALEEEFKLEIPDKEADKIDSCDLAIEYVY 120
           HPKVDPSKV+PDVHFQKDLGLDSLDTVEIVMALEEEFKLEIPD EADKIDSC+LAIEYV 
Sbjct: 61  HPKVDPSKVNPDVHFQKDLGLDSLDTVEIVMALEEEFKLEIPDNEADKIDSCNLAIEYVC 120

Query: 121 NHPMAS 127
           NHPMAS
Sbjct: 121 NHPMAS 126

[Close]
BLAST of Lsi05G018950 vs. NCBI nr
Match: gi|659075676|ref|XP_008438269.1| (PREDICTED: acyl carrier protein 1, mitochondrial-like [Cucumis melo])

HSP 1 Score: 220.3 bits (560), Expect = 1.9e-54
Identity = 112/126 (88.89%), Postives = 115/126 (91.27%), Query Frame = 1 

Query: 1   MALRAAVLRHLRVPVQFFALARRECQPPLCSGGSLRLFSSHDDHLTKDEVIERVLSVIKC 60
           MALRAAVLRHLRVPVQF ALARRECQP  CS G LRLFSSHDD  TK+EV ERVLSVIK 
Sbjct: 1   MALRAAVLRHLRVPVQFSALARRECQPAPCSDGYLRLFSSHDDRSTKEEVTERVLSVIKR 60

Query: 61  HPKVDPSKVSPDVHFQKDLGLDSLDTVEIVMALEEEFKLEIPDKEADKIDSCDLAIEYVY 120
           H KVDPSKVSP+VHFQKDLGLDSLDTVEIVMALEEEFKLEIPD EADKIDSCDLAIEYVY
Sbjct: 61  HTKVDPSKVSPNVHFQKDLGLDSLDTVEIVMALEEEFKLEIPDNEADKIDSCDLAIEYVY 120

Query: 121 NHPMAS 127
           NHPMA+
Sbjct: 121 NHPMAN 126

The following BLAST results are available for this feature:
BLAST of Lsi05G018950 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ACPM1_ARATH1.0e-4472.22Acyl carrier protein 1, mitochondrial OS=Arabidopsis thaliana GN=MTACP1 PE=2 SV=... [more]
ACPM2_ARATH8.8e-2856.69Acyl carrier protein 2, mitochondrial OS=Arabidopsis thaliana GN=MTACP2 PE=1 SV=... [more]
ACPM_NEUCR5.2e-2054.44Acyl carrier protein, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74... [more]
ACPM_YEAST5.9e-1648.28Acyl carrier protein, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204... [more]
ACPM3_ARATH3.8e-1536.75Acyl carrier protein 3, mitochondrial OS=Arabidopsis thaliana GN=MTACP2 PE=2 SV=... [more]
BLAST of Lsi05G018950 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L986_CUCSA4.5e-6396.83Acyl carrier protein OS=Cucumis sativus GN=Csa_3G128860 PE=3 SV=1[more]
A0A0A0L3Y9_CUCSA1.3e-5488.89Acyl carrier protein OS=Cucumis sativus GN=Csa_3G128850 PE=3 SV=1[more]
A0A0A0L6L3_CUCSA3.0e-5185.71Acyl carrier protein OS=Cucumis sativus GN=Csa_3G128840 PE=3 SV=1[more]
B9GP46_POPTR1.3e-4676.19Acyl carrier protein OS=Populus trichocarpa GN=POPTR_0002s13660g PE=3 SV=1[more]
W9R594_9ROSA1.3e-4678.74Acyl carrier protein OS=Morus notabilis GN=L484_023903 PE=3 SV=1[more]
BLAST of Lsi05G018950 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G44620.15.8e-4672.22 mitochondrial acyl carrier protein 1[more]
AT1G65290.15.0e-2956.69 mitochondrial acyl carrier protein 2[more]
AT5G47630.12.2e-1636.75 mitochondrial acyl carrier protein 3[more]
AT3G05020.14.4e-0944.59 acyl carrier protein 1[more]
AT5G27200.19.1e-0740.54 acyl carrier protein 5[more]
BLAST of Lsi05G018950 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778677673|ref|XP_011650836.1|6.5e-6396.83PREDICTED: acyl carrier protein 1, mitochondrial-like [Cucumis sativus][more]
gi|659075680|ref|XP_008438272.1|7.2e-6295.24PREDICTED: acyl carrier protein 1, mitochondrial-like [Cucumis melo][more]
gi|659075678|ref|XP_008438270.1|6.5e-5589.68PREDICTED: acyl carrier protein 1, mitochondrial-like [Cucumis melo][more]
gi|778677670|ref|XP_011650835.1|1.9e-5488.89PREDICTED: acyl carrier protein 1, mitochondrial-like [Cucumis sativus][more]
gi|659075676|ref|XP_008438269.1|1.9e-5488.89PREDICTED: acyl carrier protein 1, mitochondrial-like [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006633fatty acid biosynthetic process
Vocabulary: INTERPRO
TermDefinition
IPR009081PP-bd_ACP
IPR006162Ppantetheine_attach_site
IPR003231Acyl_carrier
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006633 fatty acid biosynthetic process
biological_process GO:0051607 defense response to virus
biological_process GO:0035196 production of miRNAs involved in gene silencing by miRNA
biological_process GO:0010267 production of ta-siRNAs involved in RNA interference
cellular_component GO:0005575 cellular_component
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005759 mitochondrial matrix
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G018950.1Lsi05G018950.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003231Acyl carrier protein (ACP)PRODOMPD000887coord: 87..122
score: 9.0
IPR003231Acyl carrier protein (ACP)HAMAPMF_01217Acyl_carriercoord: 49..123
score: 17
IPR003231Acyl carrier protein (ACP)TIGRFAMsTIGR00517TIGR00517coord: 48..122
score: 7.8
IPR006162Phosphopantetheine attachment sitePROSITEPS00012PHOSPHOPANTETHEINEcoord: 78..93
scor
IPR009081Phosphopantetheine binding ACP domainGENE3DG3DSA:1.10.1200.10coord: 39..125
score: 1.1
IPR009081Phosphopantetheine binding ACP domainPFAMPF00550PP-bindingcoord: 54..106
score: 4.7
IPR009081Phosphopantetheine binding ACP domainPROFILEPS50075ACP_DOMAINcoord: 78..120
score: 12
IPR009081Phosphopantetheine binding ACP domainunknownSSF47336ACP-likecoord: 46..122
score: 3.8
NoneNo IPR availablePANTHERPTHR20863ACYL CARRIER PROTEIN/ZINC FINGER PROTEIN 593-RELATEDcoord: 1..125
score: 2.6
NoneNo IPR availablePANTHERPTHR20863:SF30SUBFAMILY NOT NAMEDcoord: 1..125
score: 2.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi05G018950Csa3G128840Cucumber (Chinese Long) v2culsiB209
Lsi05G018950CSPI03G10250Wild cucumber (PI 183967)cpilsiB207
Lsi05G018950Cucsa.256950Cucumber (Gy14) v1cgylsiB415
Lsi05G018950CmaCh00G004630Cucurbita maxima (Rimu)cmalsiB008
Lsi05G018950CmaCh14G019350Cucurbita maxima (Rimu)cmalsiB245
Lsi05G018950CmaCh06G011740Cucurbita maxima (Rimu)cmalsiB764
Lsi05G018950CmoCh14G019910Cucurbita moschata (Rifu)cmolsiB233
Lsi05G018950CmoCh06G012130Cucurbita moschata (Rifu)cmolsiB757
Lsi05G018950Cla021373Watermelon (97103) v1lsiwmB365
Lsi05G018950MELO3C006263Melon (DHL92) v3.5.1lsimeB378
Lsi05G018950ClCG05G002860Watermelon (Charleston Gray)lsiwcgB335
Lsi05G018950MELO3C006263.2Melon (DHL92) v3.6.1lsimedB396
Lsi05G018950Cla97C05G083450Watermelon (97103) v2lsiwmbB333
Lsi05G018950Bhi01G000112Wax gourdlsiwgoB445
Lsi05G018950Cp4.1LG08g02430Cucurbita pepo (Zucchini)cpelsiB714
Lsi05G018950Cp4.1LG03g17590Cucurbita pepo (Zucchini)cpelsiB506
Lsi05G018950CsGy3G010360Cucumber (Gy14) v2cgyblsiB196
Lsi05G018950Carg14887Silver-seed gourdcarlsiB565
Lsi05G018950Carg06333Silver-seed gourdcarlsiB878
Lsi05G018950CsaV3_3G010390Cucumber (Chinese Long) v3cuclsiB228
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi05G018950Silver-seed gourdcarlsiB206
Lsi05G018950Silver-seed gourdcarlsiB985
Lsi05G018950Cucumber (Chinese Long) v3cuclsiB241
Lsi05G018950Cucumber (Chinese Long) v3cuclsiB244
Lsi05G018950Cucumber (Chinese Long) v3cuclsiB491
Lsi05G018950Watermelon (97103) v2lsiwmbB345
Lsi05G018950Wax gourdlsiwgoB417
Lsi05G018950Bottle gourd (USVL1VR-Ls)lsilsiB007
Lsi05G018950Bottle gourd (USVL1VR-Ls)lsilsiB159
Lsi05G018950Cucumber (Gy14) v1cgylsiB508
Lsi05G018950Cucumber (Gy14) v1cgylsiB585
Lsi05G018950Cucurbita maxima (Rimu)cmalsiB356
Lsi05G018950Cucurbita maxima (Rimu)cmalsiB835
Lsi05G018950Cucurbita moschata (Rifu)cmolsiB345
Lsi05G018950Cucurbita moschata (Rifu)cmolsiB564
Lsi05G018950Cucurbita moschata (Rifu)cmolsiB820
Lsi05G018950Cucurbita pepo (Zucchini)cpelsiB122
Lsi05G018950Cucurbita pepo (Zucchini)cpelsiB274
Lsi05G018950Wild cucumber (PI 183967)cpilsiB221
Lsi05G018950Wild cucumber (PI 183967)cpilsiB470
Lsi05G018950Cucumber (Chinese Long) v2culsiB224
Lsi05G018950Cucumber (Chinese Long) v2culsiB462
Lsi05G018950Melon (DHL92) v3.5.1lsimeB343
Lsi05G018950Watermelon (Charleston Gray)lsiwcgB346
Lsi05G018950Watermelon (97103) v1lsiwmB385
Lsi05G018950Cucumber (Gy14) v2cgyblsiB210
Lsi05G018950Cucumber (Gy14) v2cgyblsiB430
Lsi05G018950Melon (DHL92) v3.6.1lsimedB360