Lsi05G018520 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi05G018520
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionTranslation machinery associated TMA7
Locationchr05 : 25757977 .. 25760048 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCGGTCATTATACTTAAGAAGCCGTCAATTATTGCGATCGGGCAGTCCCTCTTTGTGTTCTTCTTCGACTCGGGCCAAACCCTAACGATATCTCAGCCATGTCGTCCAAGCAAGGTACGAATCGATCTATTGAGCGTTCTTTTTCGATTTCATCTTCGTTACGGTAGTATCATCGATCGAAATTTGAAGTTGTTGGCTATGATATGATATATAATCCCCGTTTTTACCGATTTAAATCGTGATGTGGAGAATCGATTTTGTTGTATGTCTTTATAGGAGGGAAAGCTAAGCCTCTGAAGCAACCCAAGGTTGATAAGAAAGACTACGACGAGGTATGCTTTCAATTTGTTATTTTATGGATCCATGCCGCATATCTATTTTCTTCCTGGTTCTCTTTATTTTGGAATTTGGATACAACTTTTGGGATCGAAGAATTTTGATCTCTCTTATGAAGTTTTGAAGGCTGTTAATGATTTCGTTGAAGTTTCAATTACTGATTGTGGCTTAGCCCACTTTCAGGGTCTCATCAAAATTCCCCTTCGCCTGAAAGGAGAATAGAAGTTATATTTGAGTAACGTGTACCTGTTTTTTGGCTTTGATCTAGTTTTTGCCTTTCTTCATCTGGTTATTATTAAAAAAAATTGAACTGCAAGCATCATTATTGTCCATTCCATTCACCGAGGAGGAAACTTCGAGCTAAAATTATTAACGGATGCCCTCACCTGAAATTACTGTCTATTCCATTCAATGGTTATTTTTATTTAATGGTCCCTTGATGAAGGGAAGATGGGAGGAACTGTAACTGCCACTACCTTAATTCGTTGTGGAGAAATTCTTTTTTGAAGTCAGCTAAATAGCATGGCGAGGTATTATTTTGAGAACTAGAATTTGAATTTTTCTGGGTTTTCTCAACAGGTTGATCTGGCCAACATGCAAAAGAAGAAGGACGAGGAAAAGGTGAGAACTTGAACTTTAAAGTTGAAAACCGTCAGTTTAGTTTAGATGCTTGGTTCTTGAATGAATGCAAACTGTTCATGTTGGTGCATGTCCTATCAACTTTTGTTAATTTTGGTCTCTGGAGTTTAATTTTCATTTTTATCTCATTTTTTGGTTTGACAATTCACTCACTAAATCTCTTAAAATATGACCTCAAATTTGTATTAAAGGGTTTTTATTGTGTATGGTTTTTAATTTAAAATTTTGTAAATAAGAATCAAAATAATCATTTTTTTTGAAAGTTGATGGACCAAAATGAAGATTTTCAAAAGATAAGAACCTAAATGAACGTTTTCATAGCAAGAGAGCAAACCAAACTAAAGCCTTAAATCGTGGGTAATATTTAGGATGCTCCCATCTTTATGCACCTCTCCCCTCACTTGCACCAAAAAAGAATTAAAATATTTAAAAAAAAAATAAAGAACTTGTCATGATTGGTCAATTTGGTAGAGAATTTTGCTTTCAACTTAAACCAAAATTGTCACAAAACTTTTTCTCCTGGTCCATTGGTTGTTTGGAAGATTGCTGCTATTAAAGTCTAATTTGGAAATGTTTGATGATATATACAGGCGATCAGGGAGCTTAGAGCAAAGGCCCAACAGAAGGGGACCTTTGGAGGTGCTGGGCTCAAGAAAAGTGGGAAGAAGTGATGGGTTCCCACGCAAAAACATGGAGGTAGATTACTTGACGACCTGAAATTGCAGACATTTAATGGCTTTTGAATCAGTTGCTTGTCTTTGTGTTCCCTGTAAAACCCTGGAAAGAAGATAATATGCTGTGGAATTATTATAGAAGTTGAACGCTTCTCAATATTCTGAACTTTCTTTAGCTTTAATATATGCTTCTCAATATTCTGAGCTTTCTTTAGCTTTAATATTCTGAACTTTTCTTTTTTTGTTCTTTCCCCTCTCTCTCTCAACTTTTTTTTTTCCTTTTTTAAAAAAAAAAAATGGGAAAAGATATTCTAAACAATCTCTAGACTTGGGGCTAAATGAAATGAATTGTTTGGCACTGTTTGGCGAAGGGTTATTTTTGGGGTCAAGAATTTATCATTGGGTTTGCATTGTGGTCGGGAG

mRNA sequence

CCGGTCATTATACTTAAGAAGCCGTCAATTATTGCGATCGGGCAGTCCCTCTTTGTGTTCTTCTTCGACTCGGGCCAAACCCTAACGATATCTCAGCCATGTCGTCCAAGCAAGGTACGAATCGATCTATTGAGCGTTCTTTTTCGATTTCATCTTCGTTACGGAGGGAAAGCTAAGCCTCTGAAGCAACCCAAGGTTGATAAGAAAGACTACGACGAGGCGATCAGGGAGCTTAGAGCAAAGGCCCAACAGAAGGGGACCTTTGGAGGTGCTGGGCTCAAGAAAAGTGGGAAGAAGTGATGGGTTCCCACGCAAAAACATGGAGGTAGATTACTTGACGACCTGAAATTGCAGACATTTAATGGCTTTTGAATCAGTTGCTTGTCTTTGTGTTCCCTGTAAAACCCTGGAAAGAAGATAATATGCTGTGGAATTATTATAGAAGTTGAACGCTTCTCAATATTCTGAACTTTCTTTAGCTTTAATATATGCTTCTCAATATTCTGAGCTTTCTTTAGCTTTAATATTCTGAACTTTTCTTTTTTTGTTCTTTCCCCTCTCTCTCTCAACTTTTTTTTTTCCTTTTTTAAAAAAAAAAAATGGGAAAAGATATTCTAAACAATCTCTAGACTTGGGGCTAAATGAAATGAATTGTTTGGCACTGTTTGGCGAAGGGTTATTTTTGGGGTCAAGAATTTATCATTGGGTTTGCATTGTGGTCGGGAG

Coding sequence (CDS)

CCGGTCATTATACTTAAGAAGCCGTCAATTATTGCGATCGGGCAGTCCCTCTTTGTGTTCTTCTTCGACTCGGGCCAAACCCTAACGATATCTCAGCCATGTCGTCCAAGCAAGGTACGAATCGATCTATTGAGCGTTCTTTTTCGATTTCATCTTCGTTACGGAGGGAAAGCTAAGCCTCTGAAGCAACCCAAGGTTGATAAGAAAGACTACGACGAGGCGATCAGGGAGCTTAGAGCAAAGGCCCAACAGAAGGGGACCTTTGGAGGTGCTGGGCTCAAGAAAAGTGGGAAGAAGTGA

Protein sequence

PVIILKKPSIIAIGQSLFVFFFDSGQTLTISQPCRPSKVRIDLLSVLFRFHLRYGGKAKPLKQPKVDKKDYDEAIRELRAKAQQKGTFGGAGLKKSGKK
BLAST of Lsi05G018520 vs. TrEMBL
Match: A0A0A0L4M8_CUCSA (F9L1.21 protein OS=Cucumis sativus GN=Csa_3G130290 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.2e-13
Identity = 56/113 (49.56%), Postives = 66/113 (58.41%), Query Frame = 1

Query: 1   PVIILKKPSIIAIGQSLFVFFFDSGQTLTISQPCRPSKVRIDLLSVLFRFHLRYGGKAKP 60
           PV+IL+KPSI+A          +    L +     P+   I  +S       + GGKAKP
Sbjct: 13  PVVILEKPSIVA----------NRVIPLCVLLRLGPNPSDISAMSS------KQGGKAKP 72

Query: 61  LKQPKVDKKDYDE--------------AIRELRAKAQQKGTFGGAGLKKSGKK 100
           LKQPKVDKKDYDE              A++ELRAKAQQKGTFGGAGLKKSGKK
Sbjct: 73  LKQPKVDKKDYDEVDMANMQKKKDEEKALKELRAKAQQKGTFGGAGLKKSGKK 109

BLAST of Lsi05G018520 vs. TrEMBL
Match: M5X8F9_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa026970mg PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 7.5e-13
Identity = 57/111 (51.35%), Postives = 63/111 (56.76%), Query Frame = 1

Query: 6   KKPSIIAIGQS---LFVFFFDSGQTLTISQPCRPSKVRIDLLSVLFRFHLRYGGKAKPLK 65
           K   IIA+G S   L    FD    L  SQPC PSKVR               GKAKPLK
Sbjct: 1   KAVRIIAVGLSWEFLLPLRFDPS-LLPRSQPCLPSKVR---------------GKAKPLK 60

Query: 66  QPKVDKKDYDE--------------AIRELRAKAQQKGTFGGAGLKKSGKK 100
           QPK +KK+YDE              A++ELRAKAQQKG+FGGAGLKKSGKK
Sbjct: 61  QPKSEKKEYDESDLANIQKKKDEEKALKELRAKAQQKGSFGGAGLKKSGKK 95

BLAST of Lsi05G018520 vs. TrEMBL
Match: A0A067KZI5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06280 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.2e-12
Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 1

Query: 53  RYGGKAKPLKQPKVDKKDYDEAIRELRAKAQQKGTFGGAGLKKSGKK 100
           + GGKAKPLKQPK DKK+YDEA+RELRAKA QKG FGG GLKKSGKK
Sbjct: 4   KQGGKAKPLKQPKSDKKEYDEALRELRAKASQKGAFGGTGLKKSGKK 50

BLAST of Lsi05G018520 vs. TrEMBL
Match: A0A067DH03_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035451mg PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.5e-10
Identity = 39/61 (63.93%), Postives = 45/61 (73.77%), Query Frame = 1

Query: 53  RYGGKAKPLKQPKVDKKDYDE--------------AIRELRAKAQQKGTFGGAGLKKSGK 100
           + GGKAKPLKQPK DKK+YDE              A++ELRAKAQQKG+FGG+GLKKSGK
Sbjct: 4   KQGGKAKPLKQPKADKKEYDEQDLANIQKKKEEEKALKELRAKAQQKGSFGGSGLKKSGK 63

BLAST of Lsi05G018520 vs. TrEMBL
Match: V4SI02_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026914mg PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.5e-10
Identity = 39/61 (63.93%), Postives = 45/61 (73.77%), Query Frame = 1

Query: 53  RYGGKAKPLKQPKVDKKDYDE--------------AIRELRAKAQQKGTFGGAGLKKSGK 100
           + GGKAKPLKQPK DKK+YDE              A++ELRAKAQQKG+FGG+GLKKSGK
Sbjct: 4   KQGGKAKPLKQPKADKKEYDEQDLANIQKKKEEEKALKELRAKAQQKGSFGGSGLKKSGK 63

BLAST of Lsi05G018520 vs. TAIR10
Match: AT1G15270.1 (AT1G15270.1 Translation machinery associated TMA7)

HSP 1 Score: 70.5 bits (171), Expect = 6.7e-13
Identity = 38/61 (62.30%), Postives = 44/61 (72.13%), Query Frame = 1

Query: 53  RYGGKAKPLKQPKVDKKDYDE--------------AIRELRAKAQQKGTFGGAGLKKSGK 100
           + GGKAKPLKQPK DKK+YDE              A++ELRAKA QKG+FGG+GLKKSGK
Sbjct: 4   KQGGKAKPLKQPKADKKEYDETDLANIQKKKDEEKALKELRAKASQKGSFGGSGLKKSGK 63

BLAST of Lsi05G018520 vs. TAIR10
Match: AT3G16040.1 (AT3G16040.1 Translation machinery associated TMA7)

HSP 1 Score: 65.1 bits (157), Expect = 2.8e-11
Identity = 36/61 (59.02%), Postives = 42/61 (68.85%), Query Frame = 1

Query: 53  RYGGKAKPLKQPKVDKKDYDE--------------AIRELRAKAQQKGTFGGAGLKKSGK 100
           + GGK KPLKQPK  KK+YDE              A++ELRAKA QKG+FGG+GLKKSGK
Sbjct: 4   KQGGKLKPLKQPKSGKKEYDEHDMELMQKKKDEEKALKELRAKASQKGSFGGSGLKKSGK 63

BLAST of Lsi05G018520 vs. NCBI nr
Match: gi|659075818|ref|XP_008438347.1| (PREDICTED: translation machinery-associated protein 7 homolog [Cucumis melo])

HSP 1 Score: 85.9 bits (211), Expect = 4.4e-14
Identity = 56/113 (49.56%), Postives = 66/113 (58.41%), Query Frame = 1

Query: 1   PVIILKKPSIIAIGQSLFVFFFDSGQTLTISQPCRPSKVRIDLLSVLFRFHLRYGGKAKP 60
           PV+I+KKPSI+A          +    L +     P+   I  +S       + GGKAKP
Sbjct: 9   PVVIVKKPSIVA----------NRAVPLCVLLRLGPNPSDISAMSS------KQGGKAKP 68

Query: 61  LKQPKVDKKDYDE--------------AIRELRAKAQQKGTFGGAGLKKSGKK 100
           LKQPKVDKKDYDE              A++ELRAKAQQKGTFGGAGLKKSGKK
Sbjct: 69  LKQPKVDKKDYDEVDMANIQKKKEEEKALKELRAKAQQKGTFGGAGLKKSGKK 105

BLAST of Lsi05G018520 vs. NCBI nr
Match: gi|700201590|gb|KGN56723.1| (F9L1.21 protein [Cucumis sativus])

HSP 1 Score: 84.0 bits (206), Expect = 1.7e-13
Identity = 56/113 (49.56%), Postives = 66/113 (58.41%), Query Frame = 1

Query: 1   PVIILKKPSIIAIGQSLFVFFFDSGQTLTISQPCRPSKVRIDLLSVLFRFHLRYGGKAKP 60
           PV+IL+KPSI+A          +    L +     P+   I  +S       + GGKAKP
Sbjct: 13  PVVILEKPSIVA----------NRVIPLCVLLRLGPNPSDISAMSS------KQGGKAKP 72

Query: 61  LKQPKVDKKDYDE--------------AIRELRAKAQQKGTFGGAGLKKSGKK 100
           LKQPKVDKKDYDE              A++ELRAKAQQKGTFGGAGLKKSGKK
Sbjct: 73  LKQPKVDKKDYDEVDMANMQKKKDEEKALKELRAKAQQKGTFGGAGLKKSGKK 109

BLAST of Lsi05G018520 vs. NCBI nr
Match: gi|595954949|ref|XP_007216609.1| (hypothetical protein PRUPE_ppa026970mg, partial [Prunus persica])

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-12
Identity = 57/111 (51.35%), Postives = 63/111 (56.76%), Query Frame = 1

Query: 6   KKPSIIAIGQS---LFVFFFDSGQTLTISQPCRPSKVRIDLLSVLFRFHLRYGGKAKPLK 65
           K   IIA+G S   L    FD    L  SQPC PSKVR               GKAKPLK
Sbjct: 1   KAVRIIAVGLSWEFLLPLRFDPS-LLPRSQPCLPSKVR---------------GKAKPLK 60

Query: 66  QPKVDKKDYDE--------------AIRELRAKAQQKGTFGGAGLKKSGKK 100
           QPK +KK+YDE              A++ELRAKAQQKG+FGGAGLKKSGKK
Sbjct: 61  QPKSEKKEYDESDLANIQKKKDEEKALKELRAKAQQKGSFGGAGLKKSGKK 95

BLAST of Lsi05G018520 vs. NCBI nr
Match: gi|643729344|gb|KDP37224.1| (hypothetical protein JCGZ_06280 [Jatropha curcas])

HSP 1 Score: 79.7 bits (195), Expect = 3.1e-12
Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 1

Query: 53  RYGGKAKPLKQPKVDKKDYDEAIRELRAKAQQKGTFGGAGLKKSGKK 100
           + GGKAKPLKQPK DKK+YDEA+RELRAKA QKG FGG GLKKSGKK
Sbjct: 4   KQGGKAKPLKQPKSDKKEYDEALRELRAKASQKGAFGGTGLKKSGKK 50

BLAST of Lsi05G018520 vs. NCBI nr
Match: gi|567868739|ref|XP_006426992.1| (hypothetical protein CICLE_v10026914mg [Citrus clementina])

HSP 1 Score: 72.4 bits (176), Expect = 5.0e-10
Identity = 39/61 (63.93%), Postives = 45/61 (73.77%), Query Frame = 1

Query: 53  RYGGKAKPLKQPKVDKKDYDE--------------AIRELRAKAQQKGTFGGAGLKKSGK 100
           + GGKAKPLKQPK DKK+YDE              A++ELRAKAQQKG+FGG+GLKKSGK
Sbjct: 4   KQGGKAKPLKQPKADKKEYDEQDLANIQKKKEEEKALKELRAKAQQKGSFGGSGLKKSGK 63

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L4M8_CUCSA1.2e-1349.56F9L1.21 protein OS=Cucumis sativus GN=Csa_3G130290 PE=4 SV=1[more]
M5X8F9_PRUPE7.5e-1351.35Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa026970mg PE=4 S... [more]
A0A067KZI5_JATCU2.2e-1282.98Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06280 PE=4 SV=1[more]
A0A067DH03_CITSI3.5e-1063.93Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035451mg PE=4 SV=1[more]
V4SI02_9ROSI3.5e-1063.93Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026914mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G15270.16.7e-1362.30 Translation machinery associated TMA7[more]
AT3G16040.12.8e-1159.02 Translation machinery associated TMA7[more]
Match NameE-valueIdentityDescription
gi|659075818|ref|XP_008438347.1|4.4e-1449.56PREDICTED: translation machinery-associated protein 7 homolog [Cucumis melo][more]
gi|700201590|gb|KGN56723.1|1.7e-1349.56F9L1.21 protein [Cucumis sativus][more]
gi|595954949|ref|XP_007216609.1|1.1e-1251.35hypothetical protein PRUPE_ppa026970mg, partial [Prunus persica][more]
gi|643729344|gb|KDP37224.1|3.1e-1282.98hypothetical protein JCGZ_06280 [Jatropha curcas][more]
gi|567868739|ref|XP_006426992.1|5.0e-1063.93hypothetical protein CICLE_v10026914mg [Citrus clementina][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR015157TMA7
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G018520.1Lsi05G018520.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015157Translation machinery associated TMA7PFAMPF09072TMA7coord: 53..99
score: 1.
NoneNo IPR availablePANTHERPTHR28632FAMILY NOT NAMEDcoord: 53..99
score: 2.9

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi05G018520Silver-seed gourdcarlsiB206
Lsi05G018520Silver-seed gourdcarlsiB878
Lsi05G018520Silver-seed gourdcarlsiB983
Lsi05G018520Cucumber (Chinese Long) v3cuclsiB220
Lsi05G018520Watermelon (97103) v2lsiwmbB341
Lsi05G018520Watermelon (97103) v2lsiwmbB347
Lsi05G018520Wax gourdlsiwgoB421
Lsi05G018520Wax gourdlsiwgoB462
Lsi05G018520Bottle gourd (USVL1VR-Ls)lsilsiB011
Lsi05G018520Cucurbita maxima (Rimu)cmalsiB245
Lsi05G018520Cucurbita maxima (Rimu)cmalsiB356
Lsi05G018520Cucurbita maxima (Rimu)cmalsiB487
Lsi05G018520Cucurbita maxima (Rimu)cmalsiB586
Lsi05G018520Cucurbita maxima (Rimu)cmalsiB762
Lsi05G018520Cucurbita maxima (Rimu)cmalsiB764
Lsi05G018520Cucurbita moschata (Rifu)cmolsiB233
Lsi05G018520Cucurbita moschata (Rifu)cmolsiB345
Lsi05G018520Cucurbita moschata (Rifu)cmolsiB471
Lsi05G018520Cucurbita moschata (Rifu)cmolsiB566
Lsi05G018520Cucurbita moschata (Rifu)cmolsiB757
Lsi05G018520Cucurbita moschata (Rifu)cmolsiB823
Lsi05G018520Cucurbita pepo (Zucchini)cpelsiB714
Lsi05G018520Wild cucumber (PI 183967)cpilsiB124
Lsi05G018520Wild cucumber (PI 183967)cpilsiB128
Lsi05G018520Wild cucumber (PI 183967)cpilsiB201
Lsi05G018520Melon (DHL92) v3.5.1lsimeB360
Lsi05G018520Watermelon (Charleston Gray)lsiwcgB343
Lsi05G018520Watermelon (Charleston Gray)lsiwcgB349
Lsi05G018520Watermelon (97103) v1lsiwmB360
Lsi05G018520Watermelon (97103) v1lsiwmB365
Lsi05G018520Cucumber (Gy14) v2cgyblsiB114
Lsi05G018520Cucumber (Gy14) v2cgyblsiB194
Lsi05G018520Melon (DHL92) v3.6.1lsimedB396