Cucsa.256550 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.256550
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionTranslation machinery-associated 7
Locationscaffold02229 : 4146246 .. 4148003 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTTATGGCCTGGCTTCTATAAATAGATTTAGCCCTGTCGTTATACTTGAGAAGCCGTCAATTGTCGCGAATCGAGTAATCCCTCTTTGTGTTCTTCTTCGACTCGGGCCAAACCCTAGCGATATCTCAGCCATGTCGTCCAAGCAAGGTACGATCGATCTATTCAGCTTTTTTTTTTtCCCcTCTCGATTTCATCTTCGTTACGGTAGTATCATCGATTGAAATCGGTGTTGTTGGCTATGATATGATCTACAATCCCCGTTTTTACCGACTTAAATCGTGATATTGAGAATCGATTTTGGTTTATGTCTTTGTAGGAGGGAAGgCAAAGCCTCTGAAGCAACCCAAGGTTGATAAGAAAGACTACGACGAGGTATGCTTTTGAATTTATTATTTTATGGATCCATCTCGCGATTAGATTTTTCATGGTTTTCCTTATTTCGGGTTCAATTTTTGGTATCGAAGAATTTCGATCTGCCTTGTGATGTTTTGAAGGCTGTAAATGATTTCATTGAAGTTTAAAATTATTGATTGTTGATCACCCCCTTTTAGAGCCTCATCAAAATTCATGATAAGAGAATAGAAGTTCTGTTTAAGTAACGCGTACCTAAATTTTGGGTTCGATCTAGTTTTTTTGCTTTTTTATTATTATAATTTAATAAAAATTTAGCTGCAAGCATCATTATCGTCGATTCCATTCACCGGAGAGGGAAGGTTCGATTCATTGGTCATTATTAATGGATGCTCTCAGCTGATATCACTTTATTCCAATCATTGATCTTATTAATTAATGGTTACTTGATGAAGGGAAGATGGAGGGAACTGTATCTACCTCTACCCTAATTCGTTCTGGAATATATATATTATAGTTATCTAATTAACCTGGGTTAGATATTATTTTCAAAACTGAAATTTGAATGTTTATGGGTTTTCTCAACAGGTTGATATGGCCAATATGCAAAAGAAGAAGGATGAGGAAAAGGTGAGAACTAGAACCTCATAACTGAAAACTGATGGTCTAATTAGATGCTTTTTGTTTGGTTCTTGAAAGAATGCAAACTGTTCATGTTGGTGCACGTCCTTTTAACTTTTGTTAATTTTGGTTCATTCATTTTCATGCTTTCTATTGAAATTTAGTTTGACAATTCACTCACTAAATTTCTTTAAAATACAACCACAAATTTGTAACAAAGTGTTTCCTCTGTGTATAAGCTTTACGTTAAAATTTTGCAAATAAGAATCATAAACTTAAAATTAAACTTAAAATTGTCACATTAACTTTTTCTTCTGGTCCATTGGTTGTATAATTCTGCGATGTTTGATGATATATACAGGCGCTCAAGGAGCTTAGAGCAAAGGCTCAACAGAAGGGGACCTTTGGAGGTGCTGGGCTCAAGAAGAGTGGGAAGAAATGAGGGGTTCCCACTTCCCACACAAATTCATGGAGGTAGATTTACTTCACGACCTGAAATTGCAGACATTTAATGGCTTTTGAATCAGTTGATTGTCCTTGTGTGTTTTATGTAAAACCCTGAAAAGAAGATGATATGCTGTTGAATGATTATATAGAAGTTGAATGCTTCTCAATATCCTAAACTTTCTTTAGCTAAATATTCTTAACTTTCCTCTCGTCTTTTGTTCTTTTTTtATTTTAATAAATATAATTAGCAAAAACATATTCTAAATTATCTCTAGACTTGAAACTAAACGAGGTTAAGAATTTAGTATTGGAATTGCATTGTTGTGGTTGGGAAA

mRNA sequence

ATGCTTTATGGCCTGGCTTCTATAAATAGATTTAGCCCTGTCGTTATACTTGAGAAGCCGTCAATTGTCGCGAATCGAGTAATCCCTCTTTGTGTTCTTCTTCGACTCGGGCCAAACCCTAGCGATATCTCAGCCATGTCGTCCAAGCAAGGAGGGAAGGCAAAGCCTCTGAAGCAACCCAAGGTTGATAAGAAAGACTACGACGAGGTTGATATGGCCAATATGCAAAAGAAGAAGGATGAGGAAAAGGCGCTCAAGGAGCTTAGAGCAAAGGCTCAACAGAAGGGGACCTTTGGAGGTGCTGGGCTCAAGAAGAGTGGGAAGAAATGAGGGGTTCCCACTTCCCACACAAATTCATGGAGGTAGATTTACTTCACGACCTGAAATTGCAGACATTTAATGGCTTTTGAATCAGTTGATTGTCCTTGTGTGTTTTATGTAAAACCCTGAAAAGAAGATGATATGCTGTTGAATGATTATATAGAAGTTGAATGCTTCTCAATATCCTAAACTTTCTTTAGCTAAATATTCTTAACTTTCCTCTCGTCTTTTGTTCtttttttattttaataaatataattaGCAAAAACATATTCTAAATTATCTCTAGACTTGAAACTAAACGAGGTTAAGAATTTAGTATTGGAATTGCATTGTTGTGGTTGGGAAA

Coding sequence (CDS)

ATGCTTTATGGCCTGGCTTCTATAAATAGATTTAGCCCTGTCGTTATACTTGAGAAGCCGTCAATTGTCGCGAATCGAGTAATCCCTCTTTGTGTTCTTCTTCGACTCGGGCCAAACCCTAGCGATATCTCAGCCATGTCGTCCAAGCAAGGAGGGAAGgCAAAGCCTCTGAAGCAACCCAAGGTTGATAAGAAAGACTACGACGAGGTTGATATGGCCAATATGCAAAAGAAGAAGGATGAGGAAAAGGCGCTCAAGGAGCTTAGAGCAAAGGCTCAACAGAAGGGGACCTTTGGAGGTGCTGGGCTCAAGAAGAGTGGGAAGAAATGA

Protein sequence

MLYGLASINRFSPVVILEKPSIVANRVIPLCVLLRLGPNPSDISAMSSKQGGKAKPLKQPKVDKKDYDEVDMANMQKKKDEEKALKELRAKAQQKGTFGGAGLKKSGKK*
Homology
[Close]
BLAST of Cucsa.256550 vs. Swiss-Prot
Match: TMA7_DROME (Translation machinery-associated protein 7 homolog OS=Drosophila melanogaster GN=CG13364 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 8.3e-14
Identity = 37/64 (57.81%), Postives = 47/64 (73.44%), Query Frame = 1 

Query: 46  MSSKQGGKAKPLKQPKVDKKDYDEVDMANMQKKKDEEKALKELRAKAQQKGTFGGAGLKK 105
           MS ++GGK KPLK PK D KD DE DMA  QK+K+++KAL+  +A A +KG   G G+KK
Sbjct: 1   MSGREGGKKKPLKAPKKDSKDLDEDDMAFKQKQKEQQKALEAAKANASKKGPLVGGGIKK 60

Query: 106 SGKK 110
           SGKK
Sbjct: 61  SGKK 64

[Close]
BLAST of Cucsa.256550 vs. Swiss-Prot
Match: TMA7_XENTR (Translation machinery-associated protein 7 OS=Xenopus tropicalis GN=tma7 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.1e-13
Identity = 36/64 (56.25%), Postives = 47/64 (73.44%), Query Frame = 1 

Query: 46  MSSKQGGKAKPLKQPKVDKKDYDEVDMANMQKKKDEEKALKELRAKAQQKGTFGGAGLKK 105
           MS ++GGK KPLKQPK   KD DE ++A  QK+K+++K L E++ KA QKG   G G+KK
Sbjct: 1   MSGREGGKKKPLKQPKKSNKDMDEDEIAFKQKQKEDQKKLDEMKGKAAQKGPLTGGGIKK 60

Query: 106 SGKK 110
           SGKK
Sbjct: 61  SGKK 64

[Close]
BLAST of Cucsa.256550 vs. Swiss-Prot
Match: TMA7_TETNG (Translation machinery-associated protein 7 OS=Tetraodon nigroviridis GN=tma7 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.1e-13
Identity = 35/64 (54.69%), Postives = 49/64 (76.56%), Query Frame = 1 

Query: 46  MSSKQGGKAKPLKQPKVDKKDYDEVDMANMQKKKDEEKALKELRAKAQQKGTFGGAGLKK 105
           MS ++GGK KPLK PK   KD D+ D+A  QK+K+++KA++ L+A+A  KG  GG+G+KK
Sbjct: 1   MSGREGGKKKPLKAPKKQSKDMDDDDVAFKQKQKEDQKAMEALKARASGKGPLGGSGIKK 60

Query: 106 SGKK 110
           SGKK
Sbjct: 61  SGKK 64

[Close]
BLAST of Cucsa.256550 vs. Swiss-Prot
Match: TMA7_MOUSE (Translation machinery-associated protein 7 OS=Mus musculus GN=Tma7 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.1e-13
Identity = 37/64 (57.81%), Postives = 46/64 (71.88%), Query Frame = 1 

Query: 46  MSSKQGGKAKPLKQPKVDKKDYDEVDMANMQKKKDEEKALKELRAKAQQKGTFGGAGLKK 105
           MS ++GGK KPLKQPK   K+ DE D A  QK+K+E+K L+EL+AKA  KG     G+KK
Sbjct: 1   MSGREGGKKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKK 60

Query: 106 SGKK 110
           SGKK
Sbjct: 61  SGKK 64

[Close]
BLAST of Cucsa.256550 vs. Swiss-Prot
Match: TMA7_HUMAN (Translation machinery-associated protein 7 OS=Homo sapiens GN=TMA7 PE=1 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.1e-13
Identity = 37/64 (57.81%), Postives = 46/64 (71.88%), Query Frame = 1 

Query: 46  MSSKQGGKAKPLKQPKVDKKDYDEVDMANMQKKKDEEKALKELRAKAQQKGTFGGAGLKK 105
           MS ++GGK KPLKQPK   K+ DE D A  QK+K+E+K L+EL+AKA  KG     G+KK
Sbjct: 1   MSGREGGKKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKK 60

Query: 106 SGKK 110
           SGKK
Sbjct: 61  SGKK 64

[Close]
BLAST of Cucsa.256550 vs. TrEMBL
Match: A0A0A0L4M8_CUCSA (F9L1.21 protein OS=Cucumis sativus GN=Csa_3G130290 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 2.8e-53
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1 

Query: 1   MLYGLASINRFSPVVILEKPSIVANRVIPLCVLLRLGPNPSDISAMSSKQGGKAKPLKQP 60
           MLYGLASINRFSPVVILEKPSIVANRVIPLCVLLRLGPNPSDISAMSSKQGGKAKPLKQP
Sbjct: 1   MLYGLASINRFSPVVILEKPSIVANRVIPLCVLLRLGPNPSDISAMSSKQGGKAKPLKQP 60

Query: 61  KVDKKDYDEVDMANMQKKKDEEKALKELRAKAQQKGTFGGAGLKKSGKK 110
           KVDKKDYDEVDMANMQKKKDEEKALKELRAKAQQKGTFGGAGLKKSGKK
Sbjct: 61  KVDKKDYDEVDMANMQKKKDEEKALKELRAKAQQKGTFGGAGLKKSGKK 109

[Close]
BLAST of Cucsa.256550 vs. TrEMBL
Match: W9S4Y5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000574 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.2e-24
Identity = 57/64 (89.06%), Postives = 62/64 (96.88%), Query Frame = 1 

Query: 46  MSSKQGGKAKPLKQPKVDKKDYDEVDMANMQKKKDEEKALKELRAKAQQKGTFGGAGLKK 105
           MSSKQGGKAKPLKQPK DKKDYDEVD+AN+QKKKDEEKALK+L+AKAQQKG FGG+GLKK
Sbjct: 1   MSSKQGGKAKPLKQPKADKKDYDEVDLANLQKKKDEEKALKDLKAKAQQKGAFGGSGLKK 60

Query: 106 SGKK 110
           SGKK
Sbjct: 61  SGKK 64

[Close]
BLAST of Cucsa.256550 vs. TrEMBL
Match: A0A0L9TA98_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan406s016100 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.1e-24
Identity = 57/64 (89.06%), Postives = 63/64 (98.44%), Query Frame = 1 

Query: 46  MSSKQGGKAKPLKQPKVDKKDYDEVDMANMQKKKDEEKALKELRAKAQQKGTFGGAGLKK 105
           MS+KQGGKAKPLK+PK DKKDYDEVDMAN+QKKKDEEKALKEL+AKAQQKG+FGG+GLKK
Sbjct: 1   MSTKQGGKAKPLKKPKSDKKDYDEVDMANLQKKKDEEKALKELKAKAQQKGSFGGSGLKK 60

Query: 106 SGKK 110
           SGKK
Sbjct: 61  SGKK 64

[Close]
BLAST of Cucsa.256550 vs. TrEMBL
Match: S8ENN3_9LAMI (Uncharacterized protein OS=Genlisea aurea GN=M569_00288 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 4.7e-24
Identity = 56/64 (87.50%), Postives = 62/64 (96.88%), Query Frame = 1 

Query: 46  MSSKQGGKAKPLKQPKVDKKDYDEVDMANMQKKKDEEKALKELRAKAQQKGTFGGAGLKK 105
           MSSKQGGKAKPLKQPK +KK+YDE+D AN+QKKKDEEKALKEL+AKAQQKGTFGG+GLKK
Sbjct: 1   MSSKQGGKAKPLKQPKAEKKEYDEIDKANIQKKKDEEKALKELKAKAQQKGTFGGSGLKK 60

Query: 106 SGKK 110
           SGKK
Sbjct: 61  SGKK 64

[Close]
BLAST of Cucsa.256550 vs. TrEMBL
Match: A0A078HFL6_BRANA (BnaA06g09940D protein OS=Brassica napus GN=BnaA06g09940D PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 6.1e-24
Identity = 57/64 (89.06%), Postives = 61/64 (95.31%), Query Frame = 1 

Query: 46  MSSKQGGKAKPLKQPKVDKKDYDEVDMANMQKKKDEEKALKELRAKAQQKGTFGGAGLKK 105
           MSSKQGGKAKPLKQPK DKK+YDE DMAN+QKKKDEEKALKELRAKA QKG+FGG+GLKK
Sbjct: 1   MSSKQGGKAKPLKQPKADKKEYDEHDMANLQKKKDEEKALKELRAKASQKGSFGGSGLKK 60

Query: 106 SGKK 110
           SGKK
Sbjct: 61  SGKK 64

[Close]
BLAST of Cucsa.256550 vs. TAIR10
Match: AT1G15270.1 (AT1G15270.1 Translation machinery associated TMA7)

HSP 1 Score: 117.9 bits (294), Expect = 4.1e-27
Identity = 56/64 (87.50%), Postives = 61/64 (95.31%), Query Frame = 1 

Query: 46  MSSKQGGKAKPLKQPKVDKKDYDEVDMANMQKKKDEEKALKELRAKAQQKGTFGGAGLKK 105
           MSSKQGGKAKPLKQPK DKK+YDE D+AN+QKKKDEEKALKELRAKA QKG+FGG+GLKK
Sbjct: 1   MSSKQGGKAKPLKQPKADKKEYDETDLANIQKKKDEEKALKELRAKASQKGSFGGSGLKK 60

Query: 106 SGKK 110
           SGKK
Sbjct: 61  SGKK 64

[Close]
BLAST of Cucsa.256550 vs. TAIR10
Match: AT3G16040.1 (AT3G16040.1 Translation machinery associated TMA7)

HSP 1 Score: 108.6 bits (270), Expect = 2.5e-24
Identity = 54/64 (84.38%), Postives = 57/64 (89.06%), Query Frame = 1 

Query: 46  MSSKQGGKAKPLKQPKVDKKDYDEVDMANMQKKKDEEKALKELRAKAQQKGTFGGAGLKK 105
           MSSKQGGK KPLKQPK  KK+YDE DM  MQKKKDEEKALKELRAKA QKG+FGG+GLKK
Sbjct: 1   MSSKQGGKLKPLKQPKSGKKEYDEHDMELMQKKKDEEKALKELRAKASQKGSFGGSGLKK 60

Query: 106 SGKK 110
           SGKK
Sbjct: 61  SGKK 64

[Close]
BLAST of Cucsa.256550 vs. NCBI nr
Match: gi|700201590|gb|KGN56723.1| (F9L1.21 protein [Cucumis sativus])

HSP 1 Score: 215.7 bits (548), Expect = 4.1e-53
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1 

Query: 1   MLYGLASINRFSPVVILEKPSIVANRVIPLCVLLRLGPNPSDISAMSSKQGGKAKPLKQP 60
           MLYGLASINRFSPVVILEKPSIVANRVIPLCVLLRLGPNPSDISAMSSKQGGKAKPLKQP
Sbjct: 1   MLYGLASINRFSPVVILEKPSIVANRVIPLCVLLRLGPNPSDISAMSSKQGGKAKPLKQP 60

Query: 61  KVDKKDYDEVDMANMQKKKDEEKALKELRAKAQQKGTFGGAGLKKSGKK 110
           KVDKKDYDEVDMANMQKKKDEEKALKELRAKAQQKGTFGGAGLKKSGKK
Sbjct: 61  KVDKKDYDEVDMANMQKKKDEEKALKELRAKAQQKGTFGGAGLKKSGKK 109

[Close]
BLAST of Cucsa.256550 vs. NCBI nr
Match: gi|659075818|ref|XP_008438347.1| (PREDICTED: translation machinery-associated protein 7 homolog [Cucumis melo])

HSP 1 Score: 195.3 bits (495), Expect = 5.7e-47
Identity = 97/105 (92.38%), Postives = 103/105 (98.10%), Query Frame = 1 

Query: 5   LASINRFSPVVILEKPSIVANRVIPLCVLLRLGPNPSDISAMSSKQGGKAKPLKQPKVDK 64
           +ASINR SPVVI++KPSIVANR +PLCVLLRLGPNPSDISAMSSKQGGKAKPLKQPKVDK
Sbjct: 1   MASINRRSPVVIVKKPSIVANRAVPLCVLLRLGPNPSDISAMSSKQGGKAKPLKQPKVDK 60

Query: 65  KDYDEVDMANMQKKKDEEKALKELRAKAQQKGTFGGAGLKKSGKK 110
           KDYDEVDMAN+QKKK+EEKALKELRAKAQQKGTFGGAGLKKSGKK
Sbjct: 61  KDYDEVDMANIQKKKEEEKALKELRAKAQQKGTFGGAGLKKSGKK 105

[Close]
BLAST of Cucsa.256550 vs. NCBI nr
Match: gi|703104627|ref|XP_010098057.1| (hypothetical protein L484_026188 [Morus notabilis])

HSP 1 Score: 120.6 bits (301), Expect = 1.8e-24
Identity = 57/64 (89.06%), Postives = 62/64 (96.88%), Query Frame = 1 

Query: 46  MSSKQGGKAKPLKQPKVDKKDYDEVDMANMQKKKDEEKALKELRAKAQQKGTFGGAGLKK 105
           MSSKQGGKAKPLKQPK DKKDYDEVD+AN+QKKKDEEKALK+L+AKAQQKG FGG+GLKK
Sbjct: 1   MSSKQGGKAKPLKQPKADKKDYDEVDLANLQKKKDEEKALKDLKAKAQQKGAFGGSGLKK 60

Query: 106 SGKK 110
           SGKK
Sbjct: 61  SGKK 64

[Close]
BLAST of Cucsa.256550 vs. NCBI nr
Match: gi|920680486|gb|KOM27351.1| (hypothetical protein LR48_Vigan406s016100 [Vigna angularis])

HSP 1 Score: 119.8 bits (299), Expect = 3.0e-24
Identity = 57/64 (89.06%), Postives = 63/64 (98.44%), Query Frame = 1 

Query: 46  MSSKQGGKAKPLKQPKVDKKDYDEVDMANMQKKKDEEKALKELRAKAQQKGTFGGAGLKK 105
           MS+KQGGKAKPLK+PK DKKDYDEVDMAN+QKKKDEEKALKEL+AKAQQKG+FGG+GLKK
Sbjct: 1   MSTKQGGKAKPLKKPKSDKKDYDEVDMANLQKKKDEEKALKELKAKAQQKGSFGGSGLKK 60

Query: 106 SGKK 110
           SGKK
Sbjct: 61  SGKK 64

[Close]
BLAST of Cucsa.256550 vs. NCBI nr
Match: gi|527209864|gb|EPS74477.1| (hypothetical protein M569_00288 [Genlisea aurea])

HSP 1 Score: 118.6 bits (296), Expect = 6.7e-24
Identity = 56/64 (87.50%), Postives = 62/64 (96.88%), Query Frame = 1 

Query: 46  MSSKQGGKAKPLKQPKVDKKDYDEVDMANMQKKKDEEKALKELRAKAQQKGTFGGAGLKK 105
           MSSKQGGKAKPLKQPK +KK+YDE+D AN+QKKKDEEKALKEL+AKAQQKGTFGG+GLKK
Sbjct: 1   MSSKQGGKAKPLKQPKAEKKEYDEIDKANIQKKKDEEKALKELKAKAQQKGTFGGSGLKK 60

Query: 106 SGKK 110
           SGKK
Sbjct: 61  SGKK 64

The following BLAST results are available for this feature:
BLAST of Cucsa.256550 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TMA7_DROME8.3e-1457.81Translation machinery-associated protein 7 homolog OS=Drosophila melanogaster GN... [more]
TMA7_XENTR1.1e-1356.25Translation machinery-associated protein 7 OS=Xenopus tropicalis GN=tma7 PE=3 SV... [more]
TMA7_TETNG1.1e-1354.69Translation machinery-associated protein 7 OS=Tetraodon nigroviridis GN=tma7 PE=... [more]
TMA7_MOUSE3.1e-1357.81Translation machinery-associated protein 7 OS=Mus musculus GN=Tma7 PE=3 SV=1[more]
TMA7_HUMAN3.1e-1357.81Translation machinery-associated protein 7 OS=Homo sapiens GN=TMA7 PE=1 SV=1[more]
BLAST of Cucsa.256550 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4M8_CUCSA2.8e-53100.00F9L1.21 protein OS=Cucumis sativus GN=Csa_3G130290 PE=4 SV=1[more]
W9S4Y5_9ROSA1.2e-2489.06Uncharacterized protein OS=Morus notabilis GN=L484_000574 PE=4 SV=1[more]
A0A0L9TA98_PHAAN2.1e-2489.06Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan406s016100 PE=4 SV=1[more]
S8ENN3_9LAMI4.7e-2487.50Uncharacterized protein OS=Genlisea aurea GN=M569_00288 PE=4 SV=1[more]
A0A078HFL6_BRANA6.1e-2489.06BnaA06g09940D protein OS=Brassica napus GN=BnaA06g09940D PE=4 SV=1[more]
BLAST of Cucsa.256550 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G15270.14.1e-2787.50 Translation machinery associated TMA7[more]
AT3G16040.12.5e-2484.38 Translation machinery associated TMA7[more]
BLAST of Cucsa.256550 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700201590|gb|KGN56723.1|4.1e-53100.00F9L1.21 protein [Cucumis sativus][more]
gi|659075818|ref|XP_008438347.1|5.7e-4792.38PREDICTED: translation machinery-associated protein 7 homolog [Cucumis melo][more]
gi|703104627|ref|XP_010098057.1|1.8e-2489.06hypothetical protein L484_026188 [Morus notabilis][more]
gi|920680486|gb|KOM27351.1|3.0e-2489.06hypothetical protein LR48_Vigan406s016100 [Vigna angularis][more]
gi|527209864|gb|EPS74477.1|6.7e-2487.50hypothetical protein M569_00288 [Genlisea aurea][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR015157TMA7
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.256550.1Cucsa.256550.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015157Translation machinery associated TMA7PFAMPF09072TMA7coord: 48..109
score: 3.3
NoneNo IPR availableunknownCoilCoilcoord: 75..95
scor
NoneNo IPR availablePANTHERPTHR28632FAMILY NOT NAMEDcoord: 46..109
score: 4.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.256550Csa3G130290Cucumber (Chinese Long) v2cgycuB366
Cucsa.256550MELO3C006303Melon (DHL92) v3.5.1cgymeB439
Cucsa.256550ClCG05G003220Watermelon (Charleston Gray)cgywcgB451
Cucsa.256550CSPI03G10740Wild cucumber (PI 183967)cgycpiB383
Cucsa.256550CmaCh14G019020Cucurbita maxima (Rimu)cgycmaB0709
Cucsa.256550CmoCh14G019550Cucurbita moschata (Rifu)cgycmoB0700
Cucsa.256550Lsi05G018520Bottle gourd (USVL1VR-Ls)cgylsiB415
Cucsa.256550Cp4.1LG03g18040Cucurbita pepo (Zucchini)cgycpeB0682
Cucsa.256550CsaV3_3G010850Cucumber (Chinese Long) v3cgycucB387
Cucsa.256550Cla97C05G083860Watermelon (97103) v2cgywmbB452
Cucsa.256550Bhi01G000153Wax gourdcgywgoB523
Cucsa.256550Carg24770Silver-seed gourdcarcgyB0213
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.256550Cucumber (Chinese Long) v3cgycucB383
Cucsa.256550Cucumber (Chinese Long) v3cgycucB386
Cucsa.256550Watermelon (97103) v2cgywmbB453
Cucsa.256550Watermelon (97103) v2cgywmbB456
Cucsa.256550Wax gourdcgywgoB510
Cucsa.256550Wax gourdcgywgoB528
Cucsa.256550Cucurbita maxima (Rimu)cgycmaB0715
Cucsa.256550Cucurbita maxima (Rimu)cgycmaB0726
Cucsa.256550Cucurbita maxima (Rimu)cgycmaB0727
Cucsa.256550Cucurbita moschata (Rifu)cgycmoB0708
Cucsa.256550Cucurbita moschata (Rifu)cgycmoB0713
Cucsa.256550Cucurbita moschata (Rifu)cgycmoB0718
Cucsa.256550Cucurbita moschata (Rifu)cgycmoB0721
Cucsa.256550Wild cucumber (PI 183967)cgycpiB377
Cucsa.256550Wild cucumber (PI 183967)cgycpiB381
Cucsa.256550Cucumber (Chinese Long) v2cgycuB361
Cucsa.256550Melon (DHL92) v3.5.1cgymeB434
Cucsa.256550Watermelon (Charleston Gray)cgywcgB452
Cucsa.256550Watermelon (Charleston Gray)cgywcgB457
Cucsa.256550Watermelon (97103) v1cgywmB476
Cucsa.256550Watermelon (97103) v1cgywmB479
Cucsa.256550Watermelon (97103) v1cgywmB483
Cucsa.256550Cucurbita pepo (Zucchini)cgycpeB0670
Cucsa.256550Cucurbita pepo (Zucchini)cgycpeB0675
Cucsa.256550Cucurbita pepo (Zucchini)cgycpeB0687
Cucsa.256550Bottle gourd (USVL1VR-Ls)cgylsiB412
Cucsa.256550Melon (DHL92) v3.6.1cgymedB429
Cucsa.256550Melon (DHL92) v3.6.1cgymedB432
Cucsa.256550Silver-seed gourdcarcgyB1077
Cucsa.256550Silver-seed gourdcarcgyB0269
Cucsa.256550Silver-seed gourdcarcgyB0887
Cucsa.256550Silver-seed gourdcarcgyB1190