Lsi05G016020 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G016020
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Xylene monooxygenase electron transfer component
Location	chr05 : 23755584 .. 23756027 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACTCTTCATTTTGTTCCATCTGCTTTCTCTCTACCCAAACAAAAGCAACCCACCAAGCTTTCCTCAGTCTTCAAGCTCAGACCCACAACCCAGATAGCCTGCTCACGGCGGCGCTTGGTGGTCCGGTCGTACAAAGTGGTGATCGAGCACGAGGGGAAGGCCACCGAGCTTGAGGTCGATGCCGACGAGAGCATATTGAGCAGTGCATTGGACAATGGCATAGAAATTCCTCACGATTGCAAGCTTGGAGTGTGCATGACTTGCCCTGCTCGCCTTGTCAGTGGCACCGTCGACCAAAGCGAAGGCATGCTGAGCGATGACGTTGTGGAGCAAGGCTATTCGCTTCTGTGTGTGGCTTATCCCCGCTCAGACTGCCACATAAAAACCATCCCTGAGGAAGAATTGTTGGCACTTCAATTAGCCACGGCTAATGACTAA

mRNA sequence

ATGGCAACTCTTCATTTTGTTCCATCTGCTTTCTCTCTACCCAAACAAAAGCAACCCACCAAGCTTTCCTCAGTCTTCAAGCTCAGACCCACAACCCAGATAGCCTGCTCACGGCGGCGCTTGGTGGTCCGGTCGTACAAAGTGGTGATCGAGCACGAGGGGAAGGCCACCGAGCTTGAGGTCGATGCCGACGAGAGCATATTGAGCAGTGCATTGGACAATGGCATAGAAATTCCTCACGATTGCAAGCTTGGAGTGTGCATGACTTGCCCTGCTCGCCTTGTCAGTGGCACCGTCGACCAAAGCGAAGGCATGCTGAGCGATGACGTTGTGGAGCAAGGCTATTCGCTTCTGTGTGTGGCTTATCCCCGCTCAGACTGCCACATAAAAACCATCCCTGAGGAAGAATTGTTGGCACTTCAATTAGCCACGGCTAATGACTAA

Coding sequence (CDS)

ATGGCAACTCTTCATTTTGTTCCATCTGCTTTCTCTCTACCCAAACAAAAGCAACCCACCAAGCTTTCCTCAGTCTTCAAGCTCAGACCCACAACCCAGATAGCCTGCTCACGGCGGCGCTTGGTGGTCCGGTCGTACAAAGTGGTGATCGAGCACGAGGGGAAGGCCACCGAGCTTGAGGTCGATGCCGACGAGAGCATATTGAGCAGTGCATTGGACAATGGCATAGAAATTCCTCACGATTGCAAGCTTGGAGTGTGCATGACTTGCCCTGCTCGCCTTGTCAGTGGCACCGTCGACCAAAGCGAAGGCATGCTGAGCGATGACGTTGTGGAGCAAGGCTATTCGCTTCTGTGTGTGGCTTATCCCCGCTCAGACTGCCACATAAAAACCATCCCTGAGGAAGAATTGTTGGCACTTCAATTAGCCACGGCTAATGACTAA

Protein sequence

MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQIACSRRRLVVRSYKVVIEHEGKATELEVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVEQGYSLLCVAYPRSDCHIKTIPEEELLALQLATAND

Homology

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BLAST of Lsi05G016020 vs. Swiss-Prot
Match: FER2_SYNP6 (Ferredoxin-2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petF2 PE=3 SV=2)

HSP 1 Score: 98.2 bits (243), Expect = 7.9e-20
Identity = 46/98 (46.94%), Postives = 68/98 (69.39%), Query Frame = 1


Query: 45  SYKVVIEHEGKATELEVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVDQSEG 104
           +Y+V + ++G++     D+D+S+L SA   G+++P  C  GVC TC AR++SG VDQ + 
Sbjct: 3   TYQVEVIYQGQSQTFTADSDQSVLDSAQAAGVDLPASCLTGVCTTCAARILSGEVDQPDA 62

Query: 105 M-LSDDVVEQGYSLLCVAYPRSDCHIKTIPEEELLALQ 142
           M +  +  +QGY+LLCVAYPRSD  I+T  E+EL ALQ
Sbjct: 63  MGVGPEPAKQGYTLLCVAYPRSDLKIETHKEDELYALQ 100

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BLAST of Lsi05G016020 vs. Swiss-Prot
Match: FER_MASLA (Ferredoxin OS=Mastigocladus laminosus GN=petF PE=1 SV=2)

HSP 1 Score: 97.8 bits (242), Expect = 1.0e-19
Identity = 49/96 (51.04%), Postives = 64/96 (66.67%), Query Frame = 1


Query: 45  SYKVVI--EHEGKATELEVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVDQS 104
           +YKV +  E EG    +EV  D+ IL +A + GI++P+ C+ G C TC  +L+SGTVDQS
Sbjct: 3   TYKVTLINEAEGLNKTIEVPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKLISGTVDQS 62

Query: 105 -EGMLSDDVVEQGYSLLCVAYPRSDCHIKTIPEEEL 138
            +  L DD +E GY L CVAYP SDC I+T  EEEL
Sbjct: 63  DQSFLDDDQIEAGYVLTCVAYPTSDCVIETHKEEEL 98

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BLAST of Lsi05G016020 vs. Swiss-Prot
Match: FER1_DESMC (Ferredoxin-1 OS=Desmonostoc muscorum PE=1 SV=2)

HSP 1 Score: 97.4 bits (241), Expect = 1.3e-19
Identity = 47/94 (50.00%), Postives = 64/94 (68.09%), Query Frame = 1


Query: 46  YKV-VIEHEGKATELEVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVDQS-E 105
           YKV +++ EG  T ++V  DE IL  A D G+++P+ C+ G C TC  ++VSGTVDQS +
Sbjct: 5   YKVTLVDQEGTETTIDVPDDEYILDIAEDQGLDLPYSCRAGACSTCAGKIVSGTVDQSDQ 64

Query: 106 GMLSDDVVEQGYSLLCVAYPRSDCHIKTIPEEEL 138
             L DD +E+GY L CVAYP SD  I+T  EE+L
Sbjct: 65  SFLDDDQIEKGYVLTCVAYPTSDLKIETHKEEDL 98

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BLAST of Lsi05G016020 vs. Swiss-Prot
Match: FER1_LEPBY (Ferredoxin-1 OS=Leptolyngbya boryana GN=petF1 PE=1 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 5.1e-19
Identity = 47/96 (48.96%), Postives = 63/96 (65.62%), Query Frame = 1


Query: 45  SYKVVI--EHEGKATELEVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVDQS 104
           S+KV +  E EG  T +EV  DE IL +A + GI++P+ C+ G C TC  ++ +GTVDQS
Sbjct: 3   SFKVTLINETEGLNTTIEVPDDEYILDAAEEQGIDLPYSCRAGACSTCAGKITAGTVDQS 62

Query: 105 -EGMLSDDVVEQGYSLLCVAYPRSDCHIKTIPEEEL 138
            +  L DD ++ GY L CVAYP SDC I T  EE+L
Sbjct: 63  DQSFLDDDQIQAGYVLTCVAYPTSDCTILTHQEEDL 98

[Close]

BLAST of Lsi05G016020 vs. Swiss-Prot
Match: FER_CHLFR (Ferredoxin OS=Chlorogloeopsis fritschii PE=1 SV=2)

HSP 1 Score: 95.1 bits (235), Expect = 6.7e-19
Identity = 47/96 (48.96%), Postives = 63/96 (65.62%), Query Frame = 1


Query: 45  SYKVVI--EHEGKATELEVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVDQS 104
           +YKV +  + EG    +EVD D  IL +A + G+++P+ C+ G C TC  ++ SGTVDQS
Sbjct: 3   TYKVTLINDAEGLNQTIEVDDDTYILDAAEEAGLDLPYSCRAGACSTCAGKIKSGTVDQS 62

Query: 105 -EGMLSDDVVEQGYSLLCVAYPRSDCHIKTIPEEEL 138
            +  L DD +E GY L CVAYP SDC I+T  EEEL
Sbjct: 63  DQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEEL 98

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BLAST of Lsi05G016020 vs. TrEMBL
Match: A0A0A0L4U6_CUCSA (Ferredoxin-1 OS=Cucumis sativus GN=Csa_3G146700 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 5.8e-70
Identity = 137/147 (93.20%), Postives = 140/147 (95.24%), Query Frame = 1


Query: 1   MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQIACSRRRLVVRSYKVVIEHEGKATELE 60
           MATLHFVPSAFSLPKQKQP KLSSV   RPTTQI+CSRRRLVVRSYKVVIEHEG+ TELE
Sbjct: 1   MATLHFVPSAFSLPKQKQPIKLSSV---RPTTQISCSRRRLVVRSYKVVIEHEGQTTELE 60

Query: 61  VDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVEQGYSLLCV 120
           VD DESILSSALDNG+EIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVV QGYSLLCV
Sbjct: 61  VDPDESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVAQGYSLLCV 120

Query: 121 AYPRSDCHIKTIPEEELLALQLATAND 148
           AYPRSDCHIKTIPEEELLALQLATAND
Sbjct: 121 AYPRSDCHIKTIPEEELLALQLATAND 144

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BLAST of Lsi05G016020 vs. TrEMBL
Match: F6HDQ5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g03490 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.4e-52
Identity = 108/148 (72.97%), Postives = 125/148 (84.46%), Query Frame = 1


Query: 1   MATLHFVPS-AFSLPKQKQPTKLSSVFKLRPTTQIACSRRRLVVRSYKVVIEHEGKATEL 60
           MATLHF  S +F+L KQ Q TKL + F++RP  +    +  L V++YKVVI+HEGK TEL
Sbjct: 1   MATLHFTTSPSFTLTKQVQLTKLPT-FQIRPRPRPNSRQLSLRVQAYKVVIDHEGKTTEL 60

Query: 61  EVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVEQGYSLLC 120
           EV+ DESIL  ALD G+ +PHDCKLGVCMTCPARLVSGT+DQSEGMLSDDVVE+GY+LLC
Sbjct: 61  EVEEDESILGKALDTGLSVPHDCKLGVCMTCPARLVSGTIDQSEGMLSDDVVERGYALLC 120

Query: 121 VAYPRSDCHIKTIPEEELLALQLATAND 148
           VAYPRSDCHIKTIPEEELL+LQLATAND
Sbjct: 121 VAYPRSDCHIKTIPEEELLSLQLATAND 147

[Close]

BLAST of Lsi05G016020 vs. TrEMBL
Match: W9R8L4_9ROSA (Ferredoxin-3 OS=Morus notabilis GN=L484_004463 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 9.3e-52
Identity = 105/148 (70.95%), Postives = 125/148 (84.46%), Query Frame = 1


Query: 1   MATLHFVPS-AFSLPKQKQPTKLSSVFKLRPTTQIACSRRRLVVRSYKVVIEHEGKATEL 60
           MATLHF PS +FSL +Q+ PTKL S  +L         RR L VRSYKVVIEHEG++TEL
Sbjct: 1   MATLHFTPSPSFSLTRQRHPTKLFSASRLNLRR-----RRSLTVRSYKVVIEHEGQSTEL 60

Query: 61  EVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVEQGYSLLC 120
           EVD DE+ILS ALD+G+ +PHDCKLGVCMTCPA+L+SG+VDQS+GMLSDDVVE+GY+LLC
Sbjct: 61  EVDPDETILSKALDSGLSVPHDCKLGVCMTCPAKLLSGSVDQSDGMLSDDVVERGYALLC 120

Query: 121 VAYPRSDCHIKTIPEEELLALQLATAND 148
            AYP+SDC I+TIPE+ELL+LQLATAND
Sbjct: 121 AAYPQSDCEIRTIPEDELLSLQLATAND 143

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BLAST of Lsi05G016020 vs. TrEMBL
Match: M5XRP8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012963mg PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 3.5e-51
Identity = 105/150 (70.00%), Postives = 127/150 (84.67%), Query Frame = 1


Query: 1   MATLHFVPS-AFSLPKQKQPTKLSSVFKL--RPTTQIACSRRRLVVRSYKVVIEHEGKAT 60
           MA LHF PS +F+LPKQ+  T+LS+ F+L  RP  +   SRR   V SYKVV+EHEG +T
Sbjct: 1   MAALHFTPSPSFTLPKQRHATRLSASFQLNIRPRHR---SRRSCTVGSYKVVVEHEGLST 60

Query: 61  ELEVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVEQGYSL 120
           ELEV+ADE+IL  AL++G+ +PHDCKLGVCMTCPARL+SG VDQSEGMLSDDVVE GY+L
Sbjct: 61  ELEVEADETILEKALESGLSVPHDCKLGVCMTCPARLLSGKVDQSEGMLSDDVVEGGYTL 120

Query: 121 LCVAYPRSDCHIKTIPEEELLALQLATAND 148
           LCV+YP+SDCHI+TIPE+ELL+LQLATAND
Sbjct: 121 LCVSYPQSDCHIRTIPEDELLSLQLATAND 147

[Close]

BLAST of Lsi05G016020 vs. TrEMBL
Match: V4RGX0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006141mg PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 5.1e-50
Identity = 105/152 (69.08%), Postives = 123/152 (80.92%), Query Frame = 1


Query: 1   MATLHFVPS-AFSLPKQKQPTKLS-SVFKLRPTTQIACSR---RRLVVRSYKVVIEHEGK 60
           MATLHF PS +F+  KQ QPT    S     P  ++A  R      VVRSYKVVIEH+G+
Sbjct: 1   MATLHFSPSPSFAFAKQNQPTTTKLSYIHFNPGKRLASQRLLKSATVVRSYKVVIEHQGQ 60

Query: 61  ATELEVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVEQGY 120
           +TELEVD DE+ILS ALD+G+ +PHDCKLGVCMTCPA+L+SG+VDQSEGMLSDDVV++GY
Sbjct: 61  STELEVDPDETILSKALDSGLTVPHDCKLGVCMTCPAKLISGSVDQSEGMLSDDVVDRGY 120

Query: 121 SLLCVAYPRSDCHIKTIPEEELLALQLATAND 148
           +LLC AYPRSDC IKTIPEEELLALQLATA+D
Sbjct: 121 ALLCSAYPRSDCRIKTIPEEELLALQLATADD 152

[Close]

BLAST of Lsi05G016020 vs. TAIR10
Match: AT4G14890.1 (AT4G14890.1 2Fe-2S ferredoxin-like superfamily protein)

HSP 1 Score: 183.3 bits (464), Expect = 1.1e-46
Identity = 92/146 (63.01%), Postives = 111/146 (76.03%), Query Frame = 1


Query: 9   SAFSLPKQKQPTKLSSVFKLRPTTQIACSRRR-------LVVRSYKVVIEHEGKATELEV 68
           S  SLPK       S  F LR  T    + RR       ++ R+YKVV+EH+GK TELEV
Sbjct: 11  STISLPKPYLSNSFS--FPLRNATLSTTTNRRNFLTTGRIIARAYKVVVEHDGKTTELEV 70

Query: 69  DADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVEQGYSLLCVA 128
           + DE+ILS ALD+G+++P+DC LGVCMTCPA+LV+GTVDQS GMLSDDVVE+GY+LLC +
Sbjct: 71  EPDETILSKALDSGLDVPYDCNLGVCMTCPAKLVTGTVDQSGGMLSDDVVERGYTLLCAS 130

Query: 129 YPRSDCHIKTIPEEELLALQLATAND 148
           YP SDCHIK IPEEELL+LQLATAND
Sbjct: 131 YPTSDCHIKMIPEEELLSLQLATAND 154

[Close]

BLAST of Lsi05G016020 vs. TAIR10
Match: AT2G27510.1 (AT2G27510.1 ferredoxin 3)

HSP 1 Score: 91.7 bits (226), Expect = 4.2e-19
Identity = 45/94 (47.87%), Postives = 63/94 (67.02%), Query Frame = 1


Query: 46  YKV-VIEHEGKATELEVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVDQSEG 105
           YKV ++  +G+  E EV  D+ IL +A + G+++P+ C+ G C TC  ++VSG VDQS+G
Sbjct: 61  YKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDG 120

Query: 106 -MLSDDVVEQGYSLLCVAYPRSDCHIKTIPEEEL 138
             L D  +E+GY L CVAYP+SDC I T  E EL
Sbjct: 121 SFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETEL 154

[Close]

BLAST of Lsi05G016020 vs. TAIR10
Match: AT1G10960.1 (AT1G10960.1 ferredoxin 1)

HSP 1 Score: 79.3 bits (194), Expect = 2.1e-15
Identity = 50/142 (35.21%), Postives = 81/142 (57.04%), Query Frame = 1


Query: 7   VPSAFSLPKQKQPTKL--------SSVFKLRPTTQIACSRRRLVVRSYKV-VIEHEGKAT 66
           + S   L +Q+ P  L         S+F L+ +T  A   R   + +YKV  I  EG+  
Sbjct: 10  IVSTSFLRRQQTPISLRSLPFANTQSLFGLKSST--ARGGRVTAMATYKVKFITPEGEQ- 69

Query: 67  ELEVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVDQS-EGMLSDDVVEQGYS 126
           E+E + D  +L +A + G+++P+ C+ G C +C  ++VSG++DQS +  L D+ + +GY 
Sbjct: 70  EVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYV 129

Query: 127 LLCVAYPRSDCHIKTIPEEELL 139
           L CVAYP SD  I+T  EE ++
Sbjct: 130 LTCVAYPTSDVVIETHKEEAIM 148

[Close]

BLAST of Lsi05G016020 vs. TAIR10
Match: AT5G10000.1 (AT5G10000.1 ferredoxin 4)

HSP 1 Score: 79.0 bits (193), Expect = 2.8e-15
Identity = 47/128 (36.72%), Postives = 70/128 (54.69%), Query Frame = 1


Query: 19  PTKLSSVFKLRPTTQIACSRRR------LVVRSYKV-VIEHEGKATELEVDADESILSSA 78
           P++     +L  TT    S  R          S KV +I  EG+  E+E + D  IL SA
Sbjct: 21  PSQAQLTTRLNNTTYFGLSSSRGNFGKVFAKESRKVKLISPEGEEQEIEGNEDCCILESA 80

Query: 79  LDNGIEIPHDCKLGVCMTCPARLVSGTVDQSEG-MLSDDVVEQGYSLLCVAYPRSDCHIK 138
            + G+E+P+ C+ G C TC  +LVSG VDQS G  L ++ +++GY L C+A P  DC + 
Sbjct: 81  ENAGLELPYSCRSGTCGTCCGKLVSGKVDQSLGSFLEEEQIQKGYILTCIALPLEDCVVY 140

[Close]

BLAST of Lsi05G016020 vs. TAIR10
Match: AT1G60950.1 (AT1G60950.1 2Fe-2S ferredoxin-like superfamily protein)

HSP 1 Score: 78.6 bits (192), Expect = 3.6e-15
Identity = 46/117 (39.32%), Postives = 72/117 (61.54%), Query Frame = 1


Query: 24  SVFKLRPTTQIACSRRRLVVRSYKV-VIEHEGKATELEVDADESILSSALDNGIEIPHDC 83
           S+F L+  T  A   R   + +YKV  I  EG+  E+E D D  +L +A + GI++P+ C
Sbjct: 35  SLFGLKSGT--ARGGRVTAMATYKVKFITPEGEL-EVECDDDVYVLDAAEEAGIDLPYSC 94

Query: 84  KLGVCMTCPARLVSGTVDQS-EGMLSDDVVEQGYSLLCVAYPRSDCHIKTIPEEELL 139
           + G C +C  ++VSG+VDQS +  L D+ + +G+ L C AYP SD  I+T  EE+++
Sbjct: 95  RAGSCSSCAGKVVSGSVDQSDQSFLDDEQIGEGFVLTCAAYPTSDVTIETHKEEDIV 148

[Close]

BLAST of Lsi05G016020 vs. NCBI nr
Match: gi|449432700|ref|XP_004134137.1| (PREDICTED: ferredoxin-1 [Cucumis sativus])

HSP 1 Score: 271.6 bits (693), Expect = 8.3e-70
Identity = 137/147 (93.20%), Postives = 140/147 (95.24%), Query Frame = 1


Query: 1   MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQIACSRRRLVVRSYKVVIEHEGKATELE 60
           MATLHFVPSAFSLPKQKQP KLSSV   RPTTQI+CSRRRLVVRSYKVVIEHEG+ TELE
Sbjct: 1   MATLHFVPSAFSLPKQKQPIKLSSV---RPTTQISCSRRRLVVRSYKVVIEHEGQTTELE 60

Query: 61  VDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVEQGYSLLCV 120
           VD DESILSSALDNG+EIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVV QGYSLLCV
Sbjct: 61  VDPDESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVAQGYSLLCV 120

Query: 121 AYPRSDCHIKTIPEEELLALQLATAND 148
           AYPRSDCHIKTIPEEELLALQLATAND
Sbjct: 121 AYPRSDCHIKTIPEEELLALQLATAND 144

[Close]

BLAST of Lsi05G016020 vs. NCBI nr
Match: gi|659076437|ref|XP_008438679.1| (PREDICTED: ferredoxin, root R-B2 [Cucumis melo])

HSP 1 Score: 270.8 bits (691), Expect = 1.4e-69
Identity = 136/147 (92.52%), Postives = 140/147 (95.24%), Query Frame = 1


Query: 1   MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQIACSRRRLVVRSYKVVIEHEGKATELE 60
           MATLHFVPSAFSLPKQKQP KLSSV   +PTT I+CSRRRLVVRSYKVVIEHEG+ TELE
Sbjct: 36  MATLHFVPSAFSLPKQKQPIKLSSV---KPTTHISCSRRRLVVRSYKVVIEHEGQTTELE 95

Query: 61  VDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVEQGYSLLCV 120
           VD DESILSSALDNG+EIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVEQGYSLLCV
Sbjct: 96  VDPDESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVEQGYSLLCV 155

Query: 121 AYPRSDCHIKTIPEEELLALQLATAND 148
           AYPRSDCHIKTIPEEELLALQLATAND
Sbjct: 156 AYPRSDCHIKTIPEEELLALQLATAND 179

[Close]

BLAST of Lsi05G016020 vs. NCBI nr
Match: gi|225432672|ref|XP_002282517.1| (PREDICTED: ferredoxin, root R-B2 [Vitis vinifera])

HSP 1 Score: 213.8 bits (543), Expect = 2.1e-52
Identity = 108/148 (72.97%), Postives = 125/148 (84.46%), Query Frame = 1


Query: 1   MATLHFVPS-AFSLPKQKQPTKLSSVFKLRPTTQIACSRRRLVVRSYKVVIEHEGKATEL 60
           MATLHF  S +F+L KQ Q TKL + F++RP  +    +  L V++YKVVI+HEGK TEL
Sbjct: 1   MATLHFTTSPSFTLTKQVQLTKLPT-FQIRPRPRPNSRQLSLRVQAYKVVIDHEGKTTEL 60

Query: 61  EVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVEQGYSLLC 120
           EV+ DESIL  ALD G+ +PHDCKLGVCMTCPARLVSGT+DQSEGMLSDDVVE+GY+LLC
Sbjct: 61  EVEEDESILGKALDTGLSVPHDCKLGVCMTCPARLVSGTIDQSEGMLSDDVVERGYALLC 120

Query: 121 VAYPRSDCHIKTIPEEELLALQLATAND 148
           VAYPRSDCHIKTIPEEELL+LQLATAND
Sbjct: 121 VAYPRSDCHIKTIPEEELLSLQLATAND 147

[Close]

BLAST of Lsi05G016020 vs. NCBI nr
Match: gi|297737056|emb|CBI26257.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 213.8 bits (543), Expect = 2.1e-52
Identity = 108/148 (72.97%), Postives = 125/148 (84.46%), Query Frame = 1


Query: 1   MATLHFVPS-AFSLPKQKQPTKLSSVFKLRPTTQIACSRRRLVVRSYKVVIEHEGKATEL 60
           MATLHF  S +F+L KQ Q TKL + F++RP  +    +  L V++YKVVI+HEGK TEL
Sbjct: 49  MATLHFTTSPSFTLTKQVQLTKLPT-FQIRPRPRPNSRQLSLRVQAYKVVIDHEGKTTEL 108

Query: 61  EVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVEQGYSLLC 120
           EV+ DESIL  ALD G+ +PHDCKLGVCMTCPARLVSGT+DQSEGMLSDDVVE+GY+LLC
Sbjct: 109 EVEEDESILGKALDTGLSVPHDCKLGVCMTCPARLVSGTIDQSEGMLSDDVVERGYALLC 168

Query: 121 VAYPRSDCHIKTIPEEELLALQLATAND 148
           VAYPRSDCHIKTIPEEELL+LQLATAND
Sbjct: 169 VAYPRSDCHIKTIPEEELLSLQLATAND 195

[Close]

BLAST of Lsi05G016020 vs. NCBI nr
Match: gi|703078552|ref|XP_010090921.1| (Ferredoxin-3 [Morus notabilis])

HSP 1 Score: 211.1 bits (536), Expect = 1.3e-51
Identity = 105/148 (70.95%), Postives = 125/148 (84.46%), Query Frame = 1


Query: 1   MATLHFVPS-AFSLPKQKQPTKLSSVFKLRPTTQIACSRRRLVVRSYKVVIEHEGKATEL 60
           MATLHF PS +FSL +Q+ PTKL S  +L         RR L VRSYKVVIEHEG++TEL
Sbjct: 1   MATLHFTPSPSFSLTRQRHPTKLFSASRLNLRR-----RRSLTVRSYKVVIEHEGQSTEL 60

Query: 61  EVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVEQGYSLLC 120
           EVD DE+ILS ALD+G+ +PHDCKLGVCMTCPA+L+SG+VDQS+GMLSDDVVE+GY+LLC
Sbjct: 61  EVDPDETILSKALDSGLSVPHDCKLGVCMTCPAKLLSGSVDQSDGMLSDDVVERGYALLC 120

Query: 121 VAYPRSDCHIKTIPEEELLALQLATAND 148
            AYP+SDC I+TIPE+ELL+LQLATAND
Sbjct: 121 AAYPQSDCEIRTIPEDELLSLQLATAND 143

The following BLAST results are available for this feature:

BLAST of Lsi05G016020 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FER2_SYNP6	7.9e-20	46.94	Ferredoxin-2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) G...	[more]
FER_MASLA	1.0e-19	51.04	Ferredoxin OS=Mastigocladus laminosus GN=petF PE=1 SV=2	[more]
FER1_DESMC	1.3e-19	50.00	Ferredoxin-1 OS=Desmonostoc muscorum PE=1 SV=2	[more]
FER1_LEPBY	5.1e-19	48.96	Ferredoxin-1 OS=Leptolyngbya boryana GN=petF1 PE=1 SV=1	[more]
FER_CHLFR	6.7e-19	48.96	Ferredoxin OS=Chlorogloeopsis fritschii PE=1 SV=2	[more]

BLAST of Lsi05G016020 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4U6_CUCSA	5.8e-70	93.20	Ferredoxin-1 OS=Cucumis sativus GN=Csa_3G146700 PE=4 SV=1	[more]
F6HDQ5_VITVI	1.4e-52	72.97	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g03490 PE=4 SV=...	[more]
W9R8L4_9ROSA	9.3e-52	70.95	Ferredoxin-3 OS=Morus notabilis GN=L484_004463 PE=4 SV=1	[more]
M5XRP8_PRUPE	3.5e-51	70.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012963mg PE=4 SV=1	[more]
V4RGX0_9ROSI	5.1e-50	69.08	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006141mg PE=4 SV=1	[more]

BLAST of Lsi05G016020 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G14890.1	1.1e-46	63.01	2Fe-2S ferredoxin-like superfamily protein	[more]
AT2G27510.1	4.2e-19	47.87	ferredoxin 3	[more]
AT1G10960.1	2.1e-15	35.21	ferredoxin 1	[more]
AT5G10000.1	2.8e-15	36.72	ferredoxin 4	[more]
AT1G60950.1	3.6e-15	39.32	2Fe-2S ferredoxin-like superfamily protein	[more]

BLAST of Lsi05G016020 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449432700\|ref\|XP_004134137.1\|	8.3e-70	93.20	PREDICTED: ferredoxin-1 [Cucumis sativus]	[more]
gi\|659076437\|ref\|XP_008438679.1\|	1.4e-69	92.52	PREDICTED: ferredoxin, root R-B2 [Cucumis melo]	[more]
gi\|225432672\|ref\|XP_002282517.1\|	2.1e-52	72.97	PREDICTED: ferredoxin, root R-B2 [Vitis vinifera]	[more]
gi\|297737056\|emb\|CBI26257.3\|	2.1e-52	72.97	unnamed protein product [Vitis vinifera]	[more]
gi\|703078552\|ref\|XP_010090921.1\|	1.3e-51	70.95	Ferredoxin-3 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0022900	electron transport chain

Vocabulary: **Molecular Function**
Term	Definition
GO:0051537	2 iron, 2 sulfur cluster binding
GO:0051536	iron-sulfur cluster binding
GO:0009055	electron carrier activity

Vocabulary: **INTERPRO**
Term	Definition
IPR012675	Beta-grasp_dom_sf
IPR010241	Fd_pln
IPR001041	2Fe-2S_ferredoxin-type

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0006364	rRNA processing
biological_process	GO:0009644	response to high light intensity
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0009055	electron carrier activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0051536	iron-sulfur cluster binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G016020.1	Lsi05G016020.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 51..123 score: 2.0
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PROFILE	PS51085	2FE2S_FER_2	coord: 46..135 score: 12
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	unknown	SSF54292	2Fe-2S ferredoxin-like	coord: 44..141 score: 1.04
IPR010241	Ferredoxin [2Fe-2S], plant	TIGRFAMs	TIGR02008	TIGR02008	coord: 45..137 score: 7.5
IPR012675	Beta-grasp domain	GENE3D	G3DSA:3.10.20.30		coord: 44..143 score: 7.4
None	No IPR available	PANTHER	PTHR19370	NADH-CYTOCHROME B5 REDUCTASE	coord: 45..142 score: 1.6
None	No IPR available	PANTHER	PTHR19370:SF127	SUBFAMILY NOT NAMED	coord: 45..142 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G016020	Csa3G146700	Cucumber (Chinese Long) v2	culsiB209
Lsi05G016020	CSPI03G13150	Wild cucumber (PI 183967)	cpilsiB207
Lsi05G016020	Cucsa.254290	Cucumber (Gy14) v1	cgylsiB415
Lsi05G016020	CmaCh14G017050	Cucurbita maxima (Rimu)	cmalsiB245
Lsi05G016020	CmoCh14G017480	Cucurbita moschata (Rifu)	cmolsiB233
Lsi05G016020	Cla021628	Watermelon (97103) v1	lsiwmB365
Lsi05G016020	MELO3C006533	Melon (DHL92) v3.5.1	lsimeB378
Lsi05G016020	MELO3C006533.2	Melon (DHL92) v3.6.1	lsimedB396
Lsi05G016020	Cla97C05G086380	Watermelon (97103) v2	lsiwmbB333
Lsi05G016020	Bhi01G000588	Wax gourd	lsiwgoB446
Lsi05G016020	Cp4.1LG03g10600	Cucurbita pepo (Zucchini)	cpelsiB506
Lsi05G016020	CsGy3G013290	Cucumber (Gy14) v2	cgyblsiB196
Lsi05G016020	Carg23523	Silver-seed gourd	carlsiB772
Lsi05G016020	CsaV3_3G013320	Cucumber (Chinese Long) v3	cuclsiB228

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G016020	Cucurbita maxima (Rimu)	cmalsiB764
Lsi05G016020	Cucurbita moschata (Rifu)	cmolsiB757
Lsi05G016020	Cucurbita pepo (Zucchini)	cpelsiB714
Lsi05G016020	Watermelon (Charleston Gray)	lsiwcgB313
Lsi05G016020	Watermelon (Charleston Gray)	lsiwcgB335
Lsi05G016020	Silver-seed gourd	carlsiB551
Lsi05G016020	Watermelon (97103) v2	lsiwmbB350