Cucsa.254290 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.254290
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionFerredoxin-1
Locationscaffold02229 : 2665954 .. 2666629 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCAGAACCTTATCTCTTCATCAACGCCCTCGAATGGTCACAACCTCACAAATTACCTCATTTTCAATTCATCCCTAAGCAGAGAAAAGAAAACAATGGCAACTCTTCATTTTGTTCCTTCCGCTTTCTCCCTACCAAAACAAAAGCAACCCATCAAGCTTTCCTCAGTCAGACCCACTACTCAGATAAGCTGTTCACGACGGCGCTTGGTGGTCCGGTCGTACAAAGTAGTGATTGAGCACGAGGGGCAGACTACCGAGCTTGAGGTCGATCCCGATGAGAGCATATTGAGCAGTGCCTTGGACAATGGCTTAGAAATTCCTCACGATTGCAAGCTTGGAGTTTGCATGACTTGCCCTGCTCGCCTTGTCAGTGGCACCGTCGACCAAAGCGAAGGTATGTTGAGCGATGACGTTGTGGCACAAGGCTATTCGCTTCTATGTGTGGCTTATCCTCGCTCAGATTGCCACATTAAAACCATCCCTGAGGAGGAATTGTTGGCACTTCAATTAGCCACGGCTAATGACTAAAATCTGAGTACTTCGTTGGATGATTTTGTAGATTTAATTCTGGTTTAGTTTATAACTATATTGAAATCGATCTATCTGGGATGTTGTCTCTTTTGGCTGTTGTTTGGTCATTTGGGTATAATGATAAATCTTTTCATTTGATTCCA

mRNA sequence

ATCAGAACCTTATCTCTTCATCAACGCCCTCGAATGGTCACAACCTCACAAATTACCTCATTTTCAATTCATCCCTAAGCAGAGAAAAGAAAACAATGGCAACTCTTCATTTTGTTCCTTCCGCTTTCTCCCTACCAAAACAAAAGCAACCCATCAAGCTTTCCTCAGTCAGACCCACTACTCAGATAAGCTGTTCACGACGGCGCTTGGTGGTCCGGTCGTACAAAGTAGTGATTGAGCACGAGGGGCAGACTACCGAGCTTGAGGTCGATCCCGATGAGAGCATATTGAGCAGTGCCTTGGACAATGGCTTAGAAATTCCTCACGATTGCAAGCTTGGAGTTTGCATGACTTGCCCTGCTCGCCTTGTCAGTGGCACCGTCGACCAAAGCGAAGGTATGTTGAGCGATGACGTTGTGGCACAAGGCTATTCGCTTCTATGTGTGGCTTATCCTCGCTCAGATTGCCACATTAAAACCATCCCTGAGGAGGAATTGTTGGCACTTCAATTAGCCACGGCTAATGACTAAAATCTGAGTACTTCGTTGGATGATTTTGTAGATTTAATTCTGGTTTAGTTTATAACTATATTGAAATCGATCTATCTGGGATGTTGTCTCTTTTGGCTGTTGTTTGGTCATTTGGGTATAATGATAAATCTTTTCATTTGATTCCA

Coding sequence (CDS)

ATGGCAACTCTTCATTTTGTTCCTTCCGCTTTCTCCCTACCAAAACAAAAGCAACCCATCAAGCTTTCCTCAGTCAGACCCACTACTCAGATAAGCTGTTCACGACGGCGCTTGGTGGTCCGGTCGTACAAAGTAGTGATTGAGCACGAGGGGCAGACTACCGAGCTTGAGGTCGATCCCGATGAGAGCATATTGAGCAGTGCCTTGGACAATGGCTTAGAAATTCCTCACGATTGCAAGCTTGGAGTTTGCATGACTTGCCCTGCTCGCCTTGTCAGTGGCACCGTCGACCAAAGCGAAGGTATGTTGAGCGATGACGTTGTGGCACAAGGCTATTCGCTTCTATGTGTGGCTTATCCTCGCTCAGATTGCCACATTAAAACCATCCCTGAGGAGGAATTGTTGGCACTTCAATTAGCCACGGCTAATGACTAA

Protein sequence

MATLHFVPSAFSLPKQKQPIKLSSVRPTTQISCSRRRLVVRSYKVVIEHEGQTTELEVDPDESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVAQGYSLLCVAYPRSDCHIKTIPEEELLALQLATAND*
Homology
[Close]
BLAST of Cucsa.254290 vs. Swiss-Prot
Match: FER2_SYNP6 (Ferredoxin-2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petF2 PE=3 SV=2)

HSP 1 Score: 95.9 bits (237), Expect = 3.9e-19
Identity = 47/98 (47.96%), Postives = 66/98 (67.35%), Query Frame = 1 

Query: 42  SYKVVIEHEGQTTELEVDPDESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEG 101
           +Y+V + ++GQ+     D D+S+L SA   G+++P  C  GVC TC AR++SG VDQ + 
Sbjct: 3   TYQVEVIYQGQSQTFTADSDQSVLDSAQAAGVDLPASCLTGVCTTCAARILSGEVDQPDA 62

Query: 102 M-LSDDVVAQGYSLLCVAYPRSDCHIKTIPEEELLALQ 139
           M +  +   QGY+LLCVAYPRSD  I+T  E+EL ALQ
Sbjct: 63  MGVGPEPAKQGYTLLCVAYPRSDLKIETHKEDELYALQ 100

[Close]
BLAST of Cucsa.254290 vs. Swiss-Prot
Match: FER1_DESMC (Ferredoxin-1 OS=Desmonostoc muscorum PE=1 SV=2)

HSP 1 Score: 94.7 bits (234), Expect = 8.6e-19
Identity = 47/94 (50.00%), Postives = 63/94 (67.02%), Query Frame = 1 

Query: 43  YKV-VIEHEGQTTELEVDPDESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQS-E 102
           YKV +++ EG  T ++V  DE IL  A D GL++P+ C+ G C TC  ++VSGTVDQS +
Sbjct: 5   YKVTLVDQEGTETTIDVPDDEYILDIAEDQGLDLPYSCRAGACSTCAGKIVSGTVDQSDQ 64

Query: 103 GMLSDDVVAQGYSLLCVAYPRSDCHIKTIPEEEL 135
             L DD + +GY L CVAYP SD  I+T  EE+L
Sbjct: 65  SFLDDDQIEKGYVLTCVAYPTSDLKIETHKEEDL 98

[Close]
BLAST of Cucsa.254290 vs. Swiss-Prot
Match: FER_MASLA (Ferredoxin OS=Mastigocladus laminosus GN=petF PE=1 SV=2)

HSP 1 Score: 94.0 bits (232), Expect = 1.5e-18
Identity = 47/96 (48.96%), Postives = 63/96 (65.62%), Query Frame = 1 

Query: 42  SYKVVI--EHEGQTTELEVDPDESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQS 101
           +YKV +  E EG    +EV  D+ IL +A + G+++P+ C+ G C TC  +L+SGTVDQS
Sbjct: 3   TYKVTLINEAEGLNKTIEVPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKLISGTVDQS 62

Query: 102 -EGMLSDDVVAQGYSLLCVAYPRSDCHIKTIPEEEL 135
            +  L DD +  GY L CVAYP SDC I+T  EEEL
Sbjct: 63  DQSFLDDDQIEAGYVLTCVAYPTSDCVIETHKEEEL 98

[Close]
BLAST of Cucsa.254290 vs. Swiss-Prot
Match: FER1_LEPBY (Ferredoxin-1 OS=Leptolyngbya boryana GN=petF1 PE=1 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.3e-18
Identity = 46/96 (47.92%), Postives = 62/96 (64.58%), Query Frame = 1 

Query: 42  SYKVVI--EHEGQTTELEVDPDESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQS 101
           S+KV +  E EG  T +EV  DE IL +A + G+++P+ C+ G C TC  ++ +GTVDQS
Sbjct: 3   SFKVTLINETEGLNTTIEVPDDEYILDAAEEQGIDLPYSCRAGACSTCAGKITAGTVDQS 62

Query: 102 -EGMLSDDVVAQGYSLLCVAYPRSDCHIKTIPEEEL 135
            +  L DD +  GY L CVAYP SDC I T  EE+L
Sbjct: 63  DQSFLDDDQIQAGYVLTCVAYPTSDCTILTHQEEDL 98

[Close]
BLAST of Cucsa.254290 vs. Swiss-Prot
Match: FER_CHLFR (Ferredoxin OS=Chlorogloeopsis fritschii PE=1 SV=2)

HSP 1 Score: 92.8 bits (229), Expect = 3.3e-18
Identity = 47/96 (48.96%), Postives = 62/96 (64.58%), Query Frame = 1 

Query: 42  SYKVVI--EHEGQTTELEVDPDESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQS 101
           +YKV +  + EG    +EVD D  IL +A + GL++P+ C+ G C TC  ++ SGTVDQS
Sbjct: 3   TYKVTLINDAEGLNQTIEVDDDTYILDAAEEAGLDLPYSCRAGACSTCAGKIKSGTVDQS 62

Query: 102 -EGMLSDDVVAQGYSLLCVAYPRSDCHIKTIPEEEL 135
            +  L DD +  GY L CVAYP SDC I+T  EEEL
Sbjct: 63  DQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEEL 98

[Close]
BLAST of Cucsa.254290 vs. TrEMBL
Match: A0A0A0L4U6_CUCSA (Ferredoxin-1 OS=Cucumis sativus GN=Csa_3G146700 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 3.5e-75
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1 

Query: 1   MATLHFVPSAFSLPKQKQPIKLSSVRPTTQISCSRRRLVVRSYKVVIEHEGQTTELEVDP 60
           MATLHFVPSAFSLPKQKQPIKLSSVRPTTQISCSRRRLVVRSYKVVIEHEGQTTELEVDP
Sbjct: 1   MATLHFVPSAFSLPKQKQPIKLSSVRPTTQISCSRRRLVVRSYKVVIEHEGQTTELEVDP 60

Query: 61  DESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVAQGYSLLCVAYP 120
           DESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVAQGYSLLCVAYP
Sbjct: 61  DESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVAQGYSLLCVAYP 120

Query: 121 RSDCHIKTIPEEELLALQLATAND 145
           RSDCHIKTIPEEELLALQLATAND
Sbjct: 121 RSDCHIKTIPEEELLALQLATAND 144

[Close]
BLAST of Cucsa.254290 vs. TrEMBL
Match: W9R8L4_9ROSA (Ferredoxin-3 OS=Morus notabilis GN=L484_004463 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 5.4e-52
Identity = 106/146 (72.60%), Postives = 127/146 (86.99%), Query Frame = 1 

Query: 1   MATLHFVPS-AFSLPKQKQPIKLSSVRPTTQISCSRRR-LVVRSYKVVIEHEGQTTELEV 60
           MATLHF PS +FSL +Q+ P KL S    ++++  RRR L VRSYKVVIEHEGQ+TELEV
Sbjct: 1   MATLHFTPSPSFSLTRQRHPTKLFSA---SRLNLRRRRSLTVRSYKVVIEHEGQSTELEV 60

Query: 61  DPDESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVAQGYSLLCVA 120
           DPDE+ILS ALD+GL +PHDCKLGVCMTCPA+L+SG+VDQS+GMLSDDVV +GY+LLC A
Sbjct: 61  DPDETILSKALDSGLSVPHDCKLGVCMTCPAKLLSGSVDQSDGMLSDDVVERGYALLCAA 120

Query: 121 YPRSDCHIKTIPEEELLALQLATAND 145
           YP+SDC I+TIPE+ELL+LQLATAND
Sbjct: 121 YPQSDCEIRTIPEDELLSLQLATAND 143

[Close]
BLAST of Cucsa.254290 vs. TrEMBL
Match: F6HDQ5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g03490 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 5.9e-51
Identity = 106/147 (72.11%), Postives = 123/147 (83.67%), Query Frame = 1 

Query: 1   MATLHFVPS-AFSLPKQKQPIKLSS--VRPTTQISCSRRRLVVRSYKVVIEHEGQTTELE 60
           MATLHF  S +F+L KQ Q  KL +  +RP  + +  +  L V++YKVVI+HEG+TTELE
Sbjct: 1   MATLHFTTSPSFTLTKQVQLTKLPTFQIRPRPRPNSRQLSLRVQAYKVVIDHEGKTTELE 60

Query: 61  VDPDESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVAQGYSLLCV 120
           V+ DESIL  ALD GL +PHDCKLGVCMTCPARLVSGT+DQSEGMLSDDVV +GY+LLCV
Sbjct: 61  VEEDESILGKALDTGLSVPHDCKLGVCMTCPARLVSGTIDQSEGMLSDDVVERGYALLCV 120

Query: 121 AYPRSDCHIKTIPEEELLALQLATAND 145
           AYPRSDCHIKTIPEEELL+LQLATAND
Sbjct: 121 AYPRSDCHIKTIPEEELLSLQLATAND 147

[Close]
BLAST of Cucsa.254290 vs. TrEMBL
Match: B9RTR5_RICCO (Ferredoxin-1, putative OS=Ricinus communis GN=RCOM_0912010 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.3e-50
Identity = 103/150 (68.67%), Postives = 125/150 (83.33%), Query Frame = 1 

Query: 1   MATLHFVPS---AFSLPKQKQPIKLSSVRPTTQISCSRRRL---VVRSYKVVIEHEGQTT 60
           MAT+HF PS   +F+L +Q  P K+    P+ +++C   R    +VRSYKVVIEHEGQ+T
Sbjct: 1   MATIHFTPSPSPSFTLTQQGLPTKI----PSFKLNCRNGRSLKSIVRSYKVVIEHEGQST 60

Query: 61  ELEVDPDESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVAQGYSL 120
           ELEV+PDE+ILS ALD+GLE+PHDCKLGVCMTCPA+++SGTVDQSEGMLSDDVV  GY+L
Sbjct: 61  ELEVEPDENILSKALDSGLEVPHDCKLGVCMTCPAKVISGTVDQSEGMLSDDVVDSGYAL 120

Query: 121 LCVAYPRSDCHIKTIPEEELLALQLATAND 145
           LC AYPRSDC I+TIPE+ELL+LQLATAND
Sbjct: 121 LCAAYPRSDCRIRTIPEDELLSLQLATAND 146

[Close]
BLAST of Cucsa.254290 vs. TrEMBL
Match: V4RGX0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006141mg PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 5.0e-50
Identity = 108/152 (71.05%), Postives = 124/152 (81.58%), Query Frame = 1 

Query: 1   MATLHFVPS-AFSLPKQKQPI--KLSSVRPTTQISCSRRRL-----VVRSYKVVIEHEGQ 60
           MATLHF PS +F+  KQ QP   KLS +        + +RL     VVRSYKVVIEH+GQ
Sbjct: 1   MATLHFSPSPSFAFAKQNQPTTTKLSYIHFNPGKRLASQRLLKSATVVRSYKVVIEHQGQ 60

Query: 61  TTELEVDPDESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVAQGY 120
           +TELEVDPDE+ILS ALD+GL +PHDCKLGVCMTCPA+L+SG+VDQSEGMLSDDVV +GY
Sbjct: 61  STELEVDPDETILSKALDSGLTVPHDCKLGVCMTCPAKLISGSVDQSEGMLSDDVVDRGY 120

Query: 121 SLLCVAYPRSDCHIKTIPEEELLALQLATAND 145
           +LLC AYPRSDC IKTIPEEELLALQLATA+D
Sbjct: 121 ALLCSAYPRSDCRIKTIPEEELLALQLATADD 152

[Close]
BLAST of Cucsa.254290 vs. TAIR10
Match: AT4G14890.1 (AT4G14890.1 2Fe-2S ferredoxin-like superfamily protein)

HSP 1 Score: 183.0 bits (463), Expect = 1.4e-46
Identity = 86/139 (61.87%), Postives = 113/139 (81.29%), Query Frame = 1 

Query: 6   FVPSAFSLPKQKQPIKLSSVRPTTQISCSRRRLVVRSYKVVIEHEGQTTELEVDPDESIL 65
           ++ ++FS P +   +  ++ R       +  R++ R+YKVV+EH+G+TTELEV+PDE+IL
Sbjct: 19  YLSNSFSFPLRNATLSTTTNRRNF---LTTGRIIARAYKVVVEHDGKTTELEVEPDETIL 78

Query: 66  SSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVAQGYSLLCVAYPRSDCH 125
           S ALD+GL++P+DC LGVCMTCPA+LV+GTVDQS GMLSDDVV +GY+LLC +YP SDCH
Sbjct: 79  SKALDSGLDVPYDCNLGVCMTCPAKLVTGTVDQSGGMLSDDVVERGYTLLCASYPTSDCH 138

Query: 126 IKTIPEEELLALQLATAND 145
           IK IPEEELL+LQLATAND
Sbjct: 139 IKMIPEEELLSLQLATAND 154

[Close]
BLAST of Cucsa.254290 vs. TAIR10
Match: AT2G27510.1 (AT2G27510.1 ferredoxin 3)

HSP 1 Score: 89.0 bits (219), Expect = 2.7e-18
Identity = 45/94 (47.87%), Postives = 62/94 (65.96%), Query Frame = 1 

Query: 43  YKV-VIEHEGQTTELEVDPDESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEG 102
           YKV ++  +GQ  E EV  D+ IL +A + G+++P+ C+ G C TC  ++VSG VDQS+G
Sbjct: 61  YKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDG 120

Query: 103 -MLSDDVVAQGYSLLCVAYPRSDCHIKTIPEEEL 135
             L D  + +GY L CVAYP+SDC I T  E EL
Sbjct: 121 SFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETEL 154

[Close]
BLAST of Cucsa.254290 vs. TAIR10
Match: AT1G10960.1 (AT1G10960.1 ferredoxin 1)

HSP 1 Score: 78.6 bits (192), Expect = 3.6e-15
Identity = 52/140 (37.14%), Postives = 82/140 (58.57%), Query Frame = 1 

Query: 7   VPSAFSLPKQKQPIKLSSVR-PTTQI------SCSR--RRLVVRSYKV-VIEHEGQTTEL 66
           + S   L +Q+ PI L S+    TQ       S +R  R   + +YKV  I  EG+  E+
Sbjct: 10  IVSTSFLRRQQTPISLRSLPFANTQSLFGLKSSTARGGRVTAMATYKVKFITPEGEQ-EV 69

Query: 67  EVDPDESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQS-EGMLSDDVVAQGYSLL 126
           E + D  +L +A + GL++P+ C+ G C +C  ++VSG++DQS +  L D+ +++GY L 
Sbjct: 70  ECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLT 129

Query: 127 CVAYPRSDCHIKTIPEEELL 136
           CVAYP SD  I+T  EE ++
Sbjct: 130 CVAYPTSDVVIETHKEEAIM 148

[Close]
BLAST of Cucsa.254290 vs. TAIR10
Match: AT5G10000.1 (AT5G10000.1 ferredoxin 4)

HSP 1 Score: 77.8 bits (190), Expect = 6.1e-15
Identity = 39/91 (42.86%), Postives = 57/91 (62.64%), Query Frame = 1 

Query: 46  VIEHEGQTTELEVDPDESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEG-MLS 105
           +I  EG+  E+E + D  IL SA + GLE+P+ C+ G C TC  +LVSG VDQS G  L 
Sbjct: 58  LISPEGEEQEIEGNEDCCILESAENAGLELPYSCRSGTCGTCCGKLVSGKVDQSLGSFLE 117

Query: 106 DDVVAQGYSLLCVAYPRSDCHIKTIPEEELL 136
           ++ + +GY L C+A P  DC + T  + +L+
Sbjct: 118 EEQIQKGYILTCIALPLEDCVVYTHKQSDLI 148

[Close]
BLAST of Cucsa.254290 vs. TAIR10
Match: AT1G60950.1 (AT1G60950.1 2Fe-2S ferredoxin-like superfamily protein)

HSP 1 Score: 77.8 bits (190), Expect = 6.1e-15
Identity = 40/102 (39.22%), Postives = 65/102 (63.73%), Query Frame = 1 

Query: 36  RRLVVRSYKV-VIEHEGQTTELEVDPDESILSSALDNGLEIPHDCKLGVCMTCPARLVSG 95
           R   + +YKV  I  EG+  E+E D D  +L +A + G+++P+ C+ G C +C  ++VSG
Sbjct: 48  RVTAMATYKVKFITPEGEL-EVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSG 107

Query: 96  TVDQS-EGMLSDDVVAQGYSLLCVAYPRSDCHIKTIPEEELL 136
           +VDQS +  L D+ + +G+ L C AYP SD  I+T  EE+++
Sbjct: 108 SVDQSDQSFLDDEQIGEGFVLTCAAYPTSDVTIETHKEEDIV 148

[Close]
BLAST of Cucsa.254290 vs. NCBI nr
Match: gi|449432700|ref|XP_004134137.1| (PREDICTED: ferredoxin-1 [Cucumis sativus])

HSP 1 Score: 288.9 bits (738), Expect = 5.0e-75
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1 

Query: 1   MATLHFVPSAFSLPKQKQPIKLSSVRPTTQISCSRRRLVVRSYKVVIEHEGQTTELEVDP 60
           MATLHFVPSAFSLPKQKQPIKLSSVRPTTQISCSRRRLVVRSYKVVIEHEGQTTELEVDP
Sbjct: 1   MATLHFVPSAFSLPKQKQPIKLSSVRPTTQISCSRRRLVVRSYKVVIEHEGQTTELEVDP 60

Query: 61  DESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVAQGYSLLCVAYP 120
           DESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVAQGYSLLCVAYP
Sbjct: 61  DESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVAQGYSLLCVAYP 120

Query: 121 RSDCHIKTIPEEELLALQLATAND 145
           RSDCHIKTIPEEELLALQLATAND
Sbjct: 121 RSDCHIKTIPEEELLALQLATAND 144

[Close]
BLAST of Cucsa.254290 vs. NCBI nr
Match: gi|659076437|ref|XP_008438679.1| (PREDICTED: ferredoxin, root R-B2 [Cucumis melo])

HSP 1 Score: 283.9 bits (725), Expect = 1.6e-73
Identity = 141/144 (97.92%), Postives = 142/144 (98.61%), Query Frame = 1 

Query: 1   MATLHFVPSAFSLPKQKQPIKLSSVRPTTQISCSRRRLVVRSYKVVIEHEGQTTELEVDP 60
           MATLHFVPSAFSLPKQKQPIKLSSV+PTT ISCSRRRLVVRSYKVVIEHEGQTTELEVDP
Sbjct: 36  MATLHFVPSAFSLPKQKQPIKLSSVKPTTHISCSRRRLVVRSYKVVIEHEGQTTELEVDP 95

Query: 61  DESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVAQGYSLLCVAYP 120
           DESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVV QGYSLLCVAYP
Sbjct: 96  DESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVEQGYSLLCVAYP 155

Query: 121 RSDCHIKTIPEEELLALQLATAND 145
           RSDCHIKTIPEEELLALQLATAND
Sbjct: 156 RSDCHIKTIPEEELLALQLATAND 179

[Close]
BLAST of Cucsa.254290 vs. NCBI nr
Match: gi|703078552|ref|XP_010090921.1| (Ferredoxin-3 [Morus notabilis])

HSP 1 Score: 211.8 bits (538), Expect = 7.7e-52
Identity = 106/146 (72.60%), Postives = 127/146 (86.99%), Query Frame = 1 

Query: 1   MATLHFVPS-AFSLPKQKQPIKLSSVRPTTQISCSRRR-LVVRSYKVVIEHEGQTTELEV 60
           MATLHF PS +FSL +Q+ P KL S    ++++  RRR L VRSYKVVIEHEGQ+TELEV
Sbjct: 1   MATLHFTPSPSFSLTRQRHPTKLFSA---SRLNLRRRRSLTVRSYKVVIEHEGQSTELEV 60

Query: 61  DPDESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVAQGYSLLCVA 120
           DPDE+ILS ALD+GL +PHDCKLGVCMTCPA+L+SG+VDQS+GMLSDDVV +GY+LLC A
Sbjct: 61  DPDETILSKALDSGLSVPHDCKLGVCMTCPAKLLSGSVDQSDGMLSDDVVERGYALLCAA 120

Query: 121 YPRSDCHIKTIPEEELLALQLATAND 145
           YP+SDC I+TIPE+ELL+LQLATAND
Sbjct: 121 YPQSDCEIRTIPEDELLSLQLATAND 143

[Close]
BLAST of Cucsa.254290 vs. NCBI nr
Match: gi|225432672|ref|XP_002282517.1| (PREDICTED: ferredoxin, root R-B2 [Vitis vinifera])

HSP 1 Score: 208.4 bits (529), Expect = 8.5e-51
Identity = 106/147 (72.11%), Postives = 123/147 (83.67%), Query Frame = 1 

Query: 1   MATLHFVPS-AFSLPKQKQPIKLSS--VRPTTQISCSRRRLVVRSYKVVIEHEGQTTELE 60
           MATLHF  S +F+L KQ Q  KL +  +RP  + +  +  L V++YKVVI+HEG+TTELE
Sbjct: 1   MATLHFTTSPSFTLTKQVQLTKLPTFQIRPRPRPNSRQLSLRVQAYKVVIDHEGKTTELE 60

Query: 61  VDPDESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVAQGYSLLCV 120
           V+ DESIL  ALD GL +PHDCKLGVCMTCPARLVSGT+DQSEGMLSDDVV +GY+LLCV
Sbjct: 61  VEEDESILGKALDTGLSVPHDCKLGVCMTCPARLVSGTIDQSEGMLSDDVVERGYALLCV 120

Query: 121 AYPRSDCHIKTIPEEELLALQLATAND 145
           AYPRSDCHIKTIPEEELL+LQLATAND
Sbjct: 121 AYPRSDCHIKTIPEEELLSLQLATAND 147

[Close]
BLAST of Cucsa.254290 vs. NCBI nr
Match: gi|297737056|emb|CBI26257.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 208.4 bits (529), Expect = 8.5e-51
Identity = 106/147 (72.11%), Postives = 123/147 (83.67%), Query Frame = 1 

Query: 1   MATLHFVPS-AFSLPKQKQPIKLSS--VRPTTQISCSRRRLVVRSYKVVIEHEGQTTELE 60
           MATLHF  S +F+L KQ Q  KL +  +RP  + +  +  L V++YKVVI+HEG+TTELE
Sbjct: 49  MATLHFTTSPSFTLTKQVQLTKLPTFQIRPRPRPNSRQLSLRVQAYKVVIDHEGKTTELE 108

Query: 61  VDPDESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVAQGYSLLCV 120
           V+ DESIL  ALD GL +PHDCKLGVCMTCPARLVSGT+DQSEGMLSDDVV +GY+LLCV
Sbjct: 109 VEEDESILGKALDTGLSVPHDCKLGVCMTCPARLVSGTIDQSEGMLSDDVVERGYALLCV 168

Query: 121 AYPRSDCHIKTIPEEELLALQLATAND 145
           AYPRSDCHIKTIPEEELL+LQLATAND
Sbjct: 169 AYPRSDCHIKTIPEEELLSLQLATAND 195

The following BLAST results are available for this feature:
BLAST of Cucsa.254290 vs. Swiss-Prot
Match NameE-valueIdentityDescription
FER2_SYNP63.9e-1947.96Ferredoxin-2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) G... [more]
FER1_DESMC8.6e-1950.00Ferredoxin-1 OS=Desmonostoc muscorum PE=1 SV=2[more]
FER_MASLA1.5e-1848.96Ferredoxin OS=Mastigocladus laminosus GN=petF PE=1 SV=2[more]
FER1_LEPBY3.3e-1847.92Ferredoxin-1 OS=Leptolyngbya boryana GN=petF1 PE=1 SV=1[more]
FER_CHLFR3.3e-1848.96Ferredoxin OS=Chlorogloeopsis fritschii PE=1 SV=2[more]
BLAST of Cucsa.254290 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4U6_CUCSA3.5e-75100.00Ferredoxin-1 OS=Cucumis sativus GN=Csa_3G146700 PE=4 SV=1[more]
W9R8L4_9ROSA5.4e-5272.60Ferredoxin-3 OS=Morus notabilis GN=L484_004463 PE=4 SV=1[more]
F6HDQ5_VITVI5.9e-5172.11Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g03490 PE=4 SV=... [more]
B9RTR5_RICCO1.3e-5068.67Ferredoxin-1, putative OS=Ricinus communis GN=RCOM_0912010 PE=4 SV=1[more]
V4RGX0_9ROSI5.0e-5071.05Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006141mg PE=4 SV=1[more]
BLAST of Cucsa.254290 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G14890.11.4e-4661.87 2Fe-2S ferredoxin-like superfamily protein[more]
AT2G27510.12.7e-1847.87 ferredoxin 3[more]
AT1G10960.13.6e-1537.14 ferredoxin 1[more]
AT5G10000.16.1e-1542.86 ferredoxin 4[more]
AT1G60950.16.1e-1539.22 2Fe-2S ferredoxin-like superfamily protein[more]
BLAST of Cucsa.254290 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449432700|ref|XP_004134137.1|5.0e-75100.00PREDICTED: ferredoxin-1 [Cucumis sativus][more]
gi|659076437|ref|XP_008438679.1|1.6e-7397.92PREDICTED: ferredoxin, root R-B2 [Cucumis melo][more]
gi|703078552|ref|XP_010090921.1|7.7e-5272.60Ferredoxin-3 [Morus notabilis][more]
gi|225432672|ref|XP_002282517.1|8.5e-5172.11PREDICTED: ferredoxin, root R-B2 [Vitis vinifera][more]
gi|297737056|emb|CBI26257.3|8.5e-5172.11unnamed protein product [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR0010412Fe-2S_ferredoxin-type
IPR010241Fd_pln
IPR012675Beta-grasp_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0009055electron carrier activity
GO:0051536iron-sulfur cluster binding
GO:00515372 iron, 2 sulfur cluster binding
Vocabulary: Biological Process
TermDefinition
GO:0022900electron transport chain
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0022900 electron transport chain
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0006364 rRNA processing
cellular_component GO:0009507 chloroplast
cellular_component GO:0005575 cellular_component
molecular_function GO:0051537 2 iron, 2 sulfur cluster binding
molecular_function GO:0009055 electron carrier activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0051536 iron-sulfur cluster binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.254290.1Cucsa.254290.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR0010412Fe-2S ferredoxin-type iron-sulfur binding domainPFAMPF00111Fer2coord: 48..120
score: 2.8
IPR0010412Fe-2S ferredoxin-type iron-sulfur binding domainPROFILEPS510852FE2S_FER_2coord: 43..132
score:
IPR0010412Fe-2S ferredoxin-type iron-sulfur binding domainunknownSSF542922Fe-2S ferredoxin-likecoord: 41..138
score: 1.7
IPR010241Ferredoxin [2Fe-2S], plantTIGRFAMsTIGR02008TIGR02008coord: 42..134
score: 4.0
IPR012675Beta-grasp domainGENE3DG3DSA:3.10.20.30coord: 41..140
score: 2.3
NoneNo IPR availablePANTHERPTHR19370NADH-CYTOCHROME B5 REDUCTASEcoord: 42..139
score: 1.1
NoneNo IPR availablePANTHERPTHR19370:SF127SUBFAMILY NOT NAMEDcoord: 42..139
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.254290Cla021628Watermelon (97103) v1cgywmB479
Cucsa.254290Csa3G146700Cucumber (Chinese Long) v2cgycuB366
Cucsa.254290MELO3C006533Melon (DHL92) v3.5.1cgymeB439
Cucsa.254290CSPI03G13150Wild cucumber (PI 183967)cgycpiB383
Cucsa.254290CmaCh14G017050Cucurbita maxima (Rimu)cgycmaB0709
Cucsa.254290CmoCh14G017480Cucurbita moschata (Rifu)cgycmoB0700
Cucsa.254290Lsi05G016020Bottle gourd (USVL1VR-Ls)cgylsiB415
Cucsa.254290Cp4.1LG03g10600Cucurbita pepo (Zucchini)cgycpeB0682
Cucsa.254290MELO3C006533.2Melon (DHL92) v3.6.1cgymedB432
Cucsa.254290CsaV3_3G013320Cucumber (Chinese Long) v3cgycucB387
Cucsa.254290Cla97C05G086380Watermelon (97103) v2cgywmbB452
Cucsa.254290Bhi01G000588Wax gourdcgywgoB522
Cucsa.254290Carg23523Silver-seed gourdcarcgyB0970
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.254290Cucurbita pepo (Zucchini)cgycpeB0676
Cucsa.254290Cucurbita pepo (Zucchini)cgycpeB0687
Cucsa.254290Bottle gourd (USVL1VR-Ls)cgylsiB412
Cucsa.254290Silver-seed gourdcarcgyB0083
Cucsa.254290Silver-seed gourdcarcgyB0383
Cucsa.254290Silver-seed gourdcarcgyB0681
Cucsa.254290Watermelon (97103) v2cgywmbB453
Cucsa.254290Wax gourdcgywgoB511
Cucsa.254290Cucurbita maxima (Rimu)cgycmaB0714
Cucsa.254290Cucurbita maxima (Rimu)cgycmaB0727
Cucsa.254290Cucurbita maxima (Rimu)cgycmaB0731
Cucsa.254290Cucurbita moschata (Rifu)cgycmoB0707
Cucsa.254290Cucurbita moschata (Rifu)cgycmoB0718
Cucsa.254290Cucurbita moschata (Rifu)cgycmoB0720
Cucsa.254290Watermelon (Charleston Gray)cgywcgB442
Cucsa.254290Watermelon (Charleston Gray)cgywcgB451
Cucsa.254290Watermelon (97103) v1cgywmB472
Cucsa.254290Watermelon (97103) v1cgywmB483