Lsi05G002740 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G002740
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Tetratricopeptide repeat (TPR)-like superfamily protein
Location	chr05 : 3567559 .. 3569776 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCGTCTTCCTTTGAACCTTCCATTATTCCATATCAGTCAAGATACCGCCCGAAGCAAGCAGAGATGTCCACAAGACAAGCAGCTTCAAAATGGTTAAAGAGATTAATCTTTCGCTCTACAGTACTCCATCGCGCTTCCGAATCTTCCGTGTCTGTCAACGTATCGATCTTGTCCTCCCGCTGTACGTAATTCAAGTTTTTTTATCTTCTACATAACTATACTTGTTGATACAACAGTGTTGAACCTGCAATAACGTGGATTACACAATGTTCGAAGTGGGTTTTAACCCAGAGCTAATTCCTATGATGTTCAAATCAATGAATTGCCATTAGTCTTAGCTATTATATGATACAAATCATGTTTTGCACTCTAGGAGTTAGTAACATCGAGACATGTTGTTAATCTCGGACCATGGAGTTCTGATTAAACTAGGTTTTCAAATTCTTACAAGCGTGGACAAATGGTTGAAGGATTCTTTAATTGATTCACAATTGCTCCGAATGGCTGTTTATGTTTGTTAATAACTTTTTTTTTCCCTTGCAGGCAAAGTGAAATCTTCTTCGTGTAATAACGGCAATGGATTTCATGATGGTTATCTCAATGGTTTTCCATGGGTTCTTTTGTCTGGACCTGCTGCAGGTTTGCTCTTTTAACCTTTATATTTAGGTGTTTCCATTTTGAGATTGTTAGTCGAGGTGTATGATTTTAGAATTTGATTTAAAGTGATCATCAAATTTAAACTAAAATAAACAATTTATCCTTTTTCATTCTGGAATTTTCTTGTTTTGGATTCTTTCATCCGCTATTTCATGTAGTTTTTGTATTTCTTAACAAATTTGTCCGCAATCTTCAAAAAAGGGGGAAAAAGAAAGAGTTGATGATGCCTGAAGATTGATAATTTGTTGTAATGACATCCATTGACCTCTGTGGTGCCAGCTATTATTCTTGGAATAAACTCAAATCCTGTCTTAGCTAAAGACGCATCATTTAAGCCAAGTTCTGAAAATGGTATTGAGGACAGTGATACTATTGGACTACGCAAAGTGGAGGATGGTTCTGTGATATCAAATTTACATACTTCAAAGTGGAGGGTTTTTACTGATACTGCTCGGGACTTATTTCTGCAGGCAAGCAGTATTTCTTTTTACCTTCACTAGCAGTTAATTCTTTAATGATTTGCACAAAGAAGGATTTTAACGTTTTTCTTTAATTAGGGAAGACTTGAAGATGCGGAAAAATATTTTATTTCTGCGATTCAAGAAGCTAAAGAAGGTTTTGGGGAGAGAGATCCTCATGTTGCATCTGCCTTCAACAATCTGGTACTCTAGCTTCTGGTTTTTTAAATTTTTGATTGTTTCCACCTTTTTCAAAATGTAGAATAGAACTTTCCTGCAGGTACTGAATAAGCCTAATGGAATAACATTTCTTTGAACCAAGACGTCAGATACAGTATTATTAGTAGTAGAAGGACCACTATTTTGATGAATTATATTGTTTTGGTTCTTAGTTGTTATCAATCCTGTAGTTTAGACATCTTACTTGAATTGAAGTCTTCATGTTGTTTCTTTTCACAAGATACTGACTTTTCATTAATCAAAGAAAAGAAACAAAAATGTTCAAAGGATACAAACTCCAAAAGGAGGTCTTCATGTAGTTACAAATAGTACCAAAATTCGTTGGGTTCAATTATCAATAAGTTTTTGCCATATTGCATTTTGCGATCCTATCATCTACACAAATTGAAGTGGAACCTAGGTGGTTAAAATTCAGAAATGGATCTAATATTAAAACTCCTTTACTAAAATCTTCACTTTGCTTAGAAGTTAGAACCTATGATCAAGAACTGTTGTGAAATAATGCCATTTAGTTTAGATTGTGGAAGCACAATTAAATGATAAATATGTTTTGTTATTCTCTTTTTAGGCAGAACTGTATAGAGTCATGAAAACATTTGACAAAGCAGAGCCCATGTATTTGGAAGCCATCAACATATTGGAGGAATCCTATGGCACTGAAGATATAAGGTTCTTGAATCCTGCAAATTTTTTCTTTGTGGCAAACCTTTTATCTTTTCCTTACAAGAACTAGAAGTATCCTTTTTGTTGGCTTTACTTTGCTAACATGGATTATTTGTGCATAGGGGATTACACATAAATATTGTGCAACGGCTTTGTTTTATTGCATGGATGTCACATAACCATCATGGGTTGGCCTAG

mRNA sequence

TTTCGTCTTCCTTTGAACCTTCCATTATTCCATATCAGTCAAGATACCGCCCGAAGCAAGCAGAGATGTCCACAAGACAAGCAGCTTCAAAATGGTTAAAGAGATTAATCTTTCGCTCTACAGTACTCCATCGCGCTTCCGAATCTTCCGTGTCTGTCAACGTATCGATCTTGTCCTCCCGCTGCAAAGTGAAATCTTCTTCGTGTAATAACGGCAATGGATTTCATGATGGTTATCTCAATGGTTTTCCATGGGTTCTTTTGTCTGGACCTGCTGCAGCTATTATTCTTGGAATAAACTCAAATCCTGTCTTAGCTAAAGACGCATCATTTAAGCCAAGTTCTGAAAATGGTATTGAGGACAGTGATACTATTGGACTACGCAAAGTGGAGGATGGTTCTGGAAGACTTGAAGATGCGGAAAAATATTTTATTTCTGCGATTCAAGAAGCTAAAGAAGGTTTTGGGGAGAGAGATCCTCATGTTGCATCTGCCTTCAACAATCTGGCAGAACTGTATAGAGTCATGAAAACATTTGACAAAGCAGAGCCCATGTATTTGGAAGCCATCAACATATTGGAGGAATCCTATGGCACTGAAGATATAAGGGGATTACACATAAATATTGTGCAACGGCTTTGTTTTATTGCATGGATGTCACATAACCATCATGGGTTGGCCTAG

Coding sequence (CDS)

ATGTCCACAAGACAAGCAGCTTCAAAATGGTTAAAGAGATTAATCTTTCGCTCTACAGTACTCCATCGCGCTTCCGAATCTTCCGTGTCTGTCAACGTATCGATCTTGTCCTCCCGCTGCAAAGTGAAATCTTCTTCGTGTAATAACGGCAATGGATTTCATGATGGTTATCTCAATGGTTTTCCATGGGTTCTTTTGTCTGGACCTGCTGCAGCTATTATTCTTGGAATAAACTCAAATCCTGTCTTAGCTAAAGACGCATCATTTAAGCCAAGTTCTGAAAATGGTATTGAGGACAGTGATACTATTGGACTACGCAAAGTGGAGGATGGTTCTGGAAGACTTGAAGATGCGGAAAAATATTTTATTTCTGCGATTCAAGAAGCTAAAGAAGGTTTTGGGGAGAGAGATCCTCATGTTGCATCTGCCTTCAACAATCTGGCAGAACTGTATAGAGTCATGAAAACATTTGACAAAGCAGAGCCCATGTATTTGGAAGCCATCAACATATTGGAGGAATCCTATGGCACTGAAGATATAAGGGGATTACACATAAATATTGTGCAACGGCTTTGTTTTATTGCATGGATGTCACATAACCATCATGGGTTGGCCTAG

Protein sequence

MSTRQAASKWLKRLIFRSTVLHRASESSVSVNVSILSSRCKVKSSSCNNGNGFHDGYLNGFPWVLLSGPAAAIILGINSNPVLAKDASFKPSSENGIEDSDTIGLRKVEDGSGRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAINILEESYGTEDIRGLHINIVQRLCFIAWMSHNHHGLA

Homology

[Close]

BLAST of Lsi05G002740 vs. Swiss-Prot
Match: APBP2_RAT (Amyloid protein-binding protein 2 OS=Rattus norvegicus GN=Appbp2 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.1e-06
Identity = 26/65 (40.00%), Postives = 41/65 (63.08%), Query Frame = 1


Query: 115 LEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAINILEES 174
           L++A    +S++Q AK+ FGE +   A  + NL  LY+ M+ F +AE M+++AI I E+ 
Sbjct: 403 LQEAHDLHLSSLQLAKKAFGEFNVQTAKHYGNLGRLYQSMRKFKEAEEMHIKAIQIKEQL 462

Query: 175 YGTED 180
            G ED
Sbjct: 463 LGQED 467

[Close]

BLAST of Lsi05G002740 vs. Swiss-Prot
Match: APBP2_HUMAN (Amyloid protein-binding protein 2 OS=Homo sapiens GN=APPBP2 PE=1 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 1.1e-06
Identity = 26/65 (40.00%), Postives = 41/65 (63.08%), Query Frame = 1


Query: 115 LEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAINILEES 174
           L++A    +S++Q AK+ FGE +   A  + NL  LY+ M+ F +AE M+++AI I E+ 
Sbjct: 403 LQEAHDLHLSSLQLAKKAFGEFNVQTAKHYGNLGRLYQSMRKFKEAEEMHIKAIQIKEQL 462

Query: 175 YGTED 180
            G ED
Sbjct: 463 LGQED 467

[Close]

BLAST of Lsi05G002740 vs. Swiss-Prot
Match: APBP2_MOUSE (Amyloid protein-binding protein 2 OS=Mus musculus GN=Appbp2 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.1e-06
Identity = 26/65 (40.00%), Postives = 41/65 (63.08%), Query Frame = 1


Query: 115 LEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAINILEES 174
           L++A    +S++Q AK+ FGE +   A  + NL  LY+ M+ F +AE M+++AI I E+ 
Sbjct: 403 LQEAHDLHLSSLQLAKKAFGEFNVQTAKHYGNLGRLYQSMRKFKEAEEMHIKAIQIKEQL 462

Query: 175 YGTED 180
            G ED
Sbjct: 463 LGQED 467

[Close]

BLAST of Lsi05G002740 vs. TrEMBL
Match: A0A0A0LA19_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G187310 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 4.9e-75
Identity = 154/204 (75.49%), Postives = 161/204 (78.92%), Query Frame = 1


Query: 1   MSTRQAASKWLKRLIFRSTVLHRASESSVSVNVSILSSRCKVKSSSCNNGNGFHDGYLNG 60
           M TRQAASKWLKRL FRST  H  S +    NVSI SSRC  KSSS  N NG+HDGYLN 
Sbjct: 1   MYTRQAASKWLKRLSFRSTAFHHTSGAPNFPNVSIFSSRCNGKSSSRKNSNGYHDGYLND 60

Query: 61  FPWVLLSGPAAAIILGINSNPVLAKDASFKPSSENGIEDSDTIGLRKVEDGS-------- 120
           FPWVLLSGPA+AIILGINSNPVLA++ASFKPSSENGIED +T+GLRKVEDGS        
Sbjct: 61  FPWVLLSGPASAIILGINSNPVLAEEASFKPSSENGIEDGETVGLRKVEDGSVVSNLHTS 120

Query: 121 ---------------GRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTF 180
                          GRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTF
Sbjct: 121 KWRVFTDTARDLFLQGRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTF 180

Query: 181 DKAEPMYLEAINILEESYGTEDIR 182
           DKAEPMYLEAI ILEESYGTEDIR
Sbjct: 181 DKAEPMYLEAIKILEESYGTEDIR 204

[Close]

BLAST of Lsi05G002740 vs. TrEMBL
Match: A0A059BTH0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02873 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 8.4e-35
Identity = 78/144 (54.17%), Postives = 100/144 (69.44%), Query Frame = 1


Query: 61  FPWVLLSGPAAAIILGINSNPVLAKDASFKPSSENGIEDSDTIGLRKVEDGS-------- 120
           FPW ++    AAI LG +SNP +A   S + +SEN  E ++ +GLR+++DGS        
Sbjct: 56  FPWWVVVAVQAAIFLGTSSNPAVADGVSIESNSENNAEAAEIVGLRRIDDGSVVSNIHTT 115

Query: 121 ---------------GRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTF 180
                          G+LE AE++F+SA+QEAKEGFGERDPHVAS+ NNLAELYRVMK F
Sbjct: 116 KWRVFTDNGRDSFLQGKLEQAERFFLSALQEAKEGFGERDPHVASSCNNLAELYRVMKAF 175

Query: 181 DKAEPMYLEAINILEESYGTEDIR 182
           DKAEP+YLEA+NILEES+G +DIR
Sbjct: 176 DKAEPLYLEAVNILEESFGPQDIR 199

[Close]

BLAST of Lsi05G002740 vs. TrEMBL
Match: A0A118JUJ3_CYNCS (Tetratricopeptide-like helical OS=Cynara cardunculus var. scolymus GN=Ccrd_005811 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 2.5e-34
Identity = 77/110 (70.00%), Postives = 91/110 (82.73%), Query Frame = 1


Query: 72  AIILGINSNPVLAKDASFKPSSENGIEDSDTIGLRKVEDGSGRLEDAEKYFISAIQEAKE 131
           A+ LG++  PVLA+DAS +  +E     SD  GLRK++DGSG+LEDAE+ F+ A+QEAKE
Sbjct: 85  ALFLGLSLTPVLAEDASTE-LTETDSSGSDFTGLRKIDDGSGKLEDAERLFVGALQEAKE 144

Query: 132 GFGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAINILEESYGTEDIR 182
           GFGERDPHVASA NNLAELYRV K FDKAEP+YLEAINILEESYG ED+R
Sbjct: 145 GFGERDPHVASACNNLAELYRVKKAFDKAEPLYLEAINILEESYGHEDVR 193

[Close]

BLAST of Lsi05G002740 vs. TrEMBL
Match: V4SXR6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10011395mg PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 5.5e-34
Identity = 97/205 (47.32%), Postives = 122/205 (59.51%), Query Frame = 1


Query: 4   RQAASKWLKRLIFRSTVLHRASESSVSVNVSILSSRCKVKSS----SCNNGNGFHDGYLN 63
           +QA +  L R  FR  V  R   SS + ++ +L   CK K S    S   G  +     +
Sbjct: 5   QQAIANLLTR--FRH-VRSRIFSSSGANSLPLLQVSCKTKFSHQYGSAAGGYAWRTNQND 64

Query: 64  GFPWVLLSGPAAAIILGINSNPVLAKDASFKPSSENGIEDSDTIGLRKVEDGS------- 123
              W+LL  PA+ +I GI  NPVLA+D S + + +N  E  + +GLRK+EDGS       
Sbjct: 65  SRLWILLFAPAS-LIYGITPNPVLAEDISIESTCQNDTEGENAVGLRKIEDGSVVSNIHT 124

Query: 124 ----------------GRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKT 182
                           G+L +AEK F+SA+QEAKEGFGERDPHVASA NNLAELYRV K 
Sbjct: 125 SKWRVFTDSGRHYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKA 184

[Close]

BLAST of Lsi05G002740 vs. TrEMBL
Match: V4UVW3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10011395mg PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 5.5e-34
Identity = 97/205 (47.32%), Postives = 122/205 (59.51%), Query Frame = 1


Query: 4   RQAASKWLKRLIFRSTVLHRASESSVSVNVSILSSRCKVKSS----SCNNGNGFHDGYLN 63
           +QA +  L R  FR  V  R   SS + ++ +L   CK K S    S   G  +     +
Sbjct: 5   QQAIANLLTR--FRH-VRSRIFSSSGANSLPLLQVSCKTKFSHQYGSAAGGYAWRTNQND 64

Query: 64  GFPWVLLSGPAAAIILGINSNPVLAKDASFKPSSENGIEDSDTIGLRKVEDGS------- 123
              W+LL  PA+ +I GI  NPVLA+D S + + +N  E  + +GLRK+EDGS       
Sbjct: 65  SRLWILLFAPAS-LIYGITPNPVLAEDISIESTCQNDTEGENAVGLRKIEDGSVVSNIHT 124

Query: 124 ----------------GRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKT 182
                           G+L +AEK F+SA+QEAKEGFGERDPHVASA NNLAELYRV K 
Sbjct: 125 SKWRVFTDSGRHYFLQGKLAEAEKLFLSALQEAKEGFGERDPHVASACNNLAELYRVKKA 184

[Close]

BLAST of Lsi05G002740 vs. TAIR10
Match: AT5G37590.1 (AT5G37590.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 141.4 bits (355), Expect = 6.4e-34
Identity = 82/169 (48.52%), Postives = 105/169 (62.13%), Query Frame = 1


Query: 36  LSSRCKVKSSSCNNGNGFHDGYLNGFPWVLLSGPAAAIILGINSNPVLAKDASFKPSSEN 95
           LS + ++   +   G+  +   L+   W++LSG AA  ILG   N VLA+D S K  S +
Sbjct: 36  LSGKPRISYQNDYGGHRTNLHLLDSRLWIILSGQAA--ILGFCGNTVLAEDESMKSKSGD 95

Query: 96  GIEDSDTIGLRKVEDGS-----------------------GRLEDAEKYFISAIQEAKEG 155
            +++S   GL K+EDGS                       G+LE AE+ F SAIQEAKEG
Sbjct: 96  NMDESGNTGLEKIEDGSVVSNIHTSKWRVFTDSGRDYFFQGKLEPAERLFGSAIQEAKEG 155

Query: 156 FGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAINILEESYGTEDIR 182
           FGE+DPHVASA NNLAELYRV K FDKAEP+YLEA++ILEE YG +D+R
Sbjct: 156 FGEKDPHVASACNNLAELYRVKKEFDKAEPLYLEAVSILEEFYGPDDVR 202

[Close]

BLAST of Lsi05G002740 vs. NCBI nr
Match: gi|659114569|ref|XP_008457119.1| (PREDICTED: kinesin light chain 3-like isoform X2 [Cucumis melo])

HSP 1 Score: 298.1 bits (762), Expect = 1.2e-77
Identity = 158/204 (77.45%), Postives = 164/204 (80.39%), Query Frame = 1


Query: 1   MSTRQAASKWLKRLIFRSTVLHRASESSVSVNVSILSSRCKVKSSSCNNGNGFHDGYLNG 60
           M TRQAASKWLKRL FRST  H  SE+    NVSI SSRC VKSSS  N NG+HDGYLNG
Sbjct: 1   MYTRQAASKWLKRLSFRSTAFHLTSEAPNLPNVSIFSSRCNVKSSSRKNSNGYHDGYLNG 60

Query: 61  FPWVLLSGPAAAIILGINSNPVLAKDASFKPSSENGIEDSDTIGLRKVEDGS-------- 120
           FPWV LSGPAAAIILGINSNPVLA++ASFKPSSENGIED +T+GLRKVEDGS        
Sbjct: 61  FPWVFLSGPAAAIILGINSNPVLAEEASFKPSSENGIEDGETVGLRKVEDGSVVSNLHTS 120

Query: 121 ---------------GRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTF 180
                          GRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTF
Sbjct: 121 KWRVFTDTARDLFLQGRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTF 180

Query: 181 DKAEPMYLEAINILEESYGTEDIR 182
           DKAEPMYLEAINILEESYGTEDIR
Sbjct: 181 DKAEPMYLEAINILEESYGTEDIR 204

[Close]

BLAST of Lsi05G002740 vs. NCBI nr
Match: gi|659114571|ref|XP_008457120.1| (PREDICTED: kinesin light chain 3-like isoform X3 [Cucumis melo])

HSP 1 Score: 298.1 bits (762), Expect = 1.2e-77
Identity = 158/204 (77.45%), Postives = 164/204 (80.39%), Query Frame = 1


Query: 1   MSTRQAASKWLKRLIFRSTVLHRASESSVSVNVSILSSRCKVKSSSCNNGNGFHDGYLNG 60
           M TRQAASKWLKRL FRST  H  SE+    NVSI SSRC VKSSS  N NG+HDGYLNG
Sbjct: 1   MYTRQAASKWLKRLSFRSTAFHLTSEAPNLPNVSIFSSRCNVKSSSRKNSNGYHDGYLNG 60

Query: 61  FPWVLLSGPAAAIILGINSNPVLAKDASFKPSSENGIEDSDTIGLRKVEDGS-------- 120
           FPWV LSGPAAAIILGINSNPVLA++ASFKPSSENGIED +T+GLRKVEDGS        
Sbjct: 61  FPWVFLSGPAAAIILGINSNPVLAEEASFKPSSENGIEDGETVGLRKVEDGSVVSNLHTS 120

Query: 121 ---------------GRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTF 180
                          GRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTF
Sbjct: 121 KWRVFTDTARDLFLQGRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTF 180

Query: 181 DKAEPMYLEAINILEESYGTEDIR 182
           DKAEPMYLEAINILEESYGTEDIR
Sbjct: 181 DKAEPMYLEAINILEESYGTEDIR 204

[Close]

BLAST of Lsi05G002740 vs. NCBI nr
Match: gi|659114567|ref|XP_008457118.1| (PREDICTED: kinesin light chain 1-like isoform X1 [Cucumis melo])

HSP 1 Score: 298.1 bits (762), Expect = 1.2e-77
Identity = 158/204 (77.45%), Postives = 164/204 (80.39%), Query Frame = 1


Query: 1   MSTRQAASKWLKRLIFRSTVLHRASESSVSVNVSILSSRCKVKSSSCNNGNGFHDGYLNG 60
           M TRQAASKWLKRL FRST  H  SE+    NVSI SSRC VKSSS  N NG+HDGYLNG
Sbjct: 1   MYTRQAASKWLKRLSFRSTAFHLTSEAPNLPNVSIFSSRCNVKSSSRKNSNGYHDGYLNG 60

Query: 61  FPWVLLSGPAAAIILGINSNPVLAKDASFKPSSENGIEDSDTIGLRKVEDGS-------- 120
           FPWV LSGPAAAIILGINSNPVLA++ASFKPSSENGIED +T+GLRKVEDGS        
Sbjct: 61  FPWVFLSGPAAAIILGINSNPVLAEEASFKPSSENGIEDGETVGLRKVEDGSVVSNLHTS 120

Query: 121 ---------------GRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTF 180
                          GRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTF
Sbjct: 121 KWRVFTDTARDLFLQGRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTF 180

Query: 181 DKAEPMYLEAINILEESYGTEDIR 182
           DKAEPMYLEAINILEESYGTEDIR
Sbjct: 181 DKAEPMYLEAINILEESYGTEDIR 204

[Close]

BLAST of Lsi05G002740 vs. NCBI nr
Match: gi|700202324|gb|KGN57457.1| (hypothetical protein Csa_3G187310 [Cucumis sativus])

HSP 1 Score: 288.9 bits (738), Expect = 7.0e-75
Identity = 154/204 (75.49%), Postives = 161/204 (78.92%), Query Frame = 1


Query: 1   MSTRQAASKWLKRLIFRSTVLHRASESSVSVNVSILSSRCKVKSSSCNNGNGFHDGYLNG 60
           M TRQAASKWLKRL FRST  H  S +    NVSI SSRC  KSSS  N NG+HDGYLN 
Sbjct: 1   MYTRQAASKWLKRLSFRSTAFHHTSGAPNFPNVSIFSSRCNGKSSSRKNSNGYHDGYLND 60

Query: 61  FPWVLLSGPAAAIILGINSNPVLAKDASFKPSSENGIEDSDTIGLRKVEDGS-------- 120
           FPWVLLSGPA+AIILGINSNPVLA++ASFKPSSENGIED +T+GLRKVEDGS        
Sbjct: 61  FPWVLLSGPASAIILGINSNPVLAEEASFKPSSENGIEDGETVGLRKVEDGSVVSNLHTS 120

Query: 121 ---------------GRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTF 180
                          GRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTF
Sbjct: 121 KWRVFTDTARDLFLQGRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTF 180

Query: 181 DKAEPMYLEAINILEESYGTEDIR 182
           DKAEPMYLEAI ILEESYGTEDIR
Sbjct: 181 DKAEPMYLEAIKILEESYGTEDIR 204

[Close]

BLAST of Lsi05G002740 vs. NCBI nr
Match: gi|778679900|ref|XP_011651210.1| (PREDICTED: uncharacterized protein LOC101207905 isoform X1 [Cucumis sativus])

HSP 1 Score: 288.9 bits (738), Expect = 7.0e-75
Identity = 154/204 (75.49%), Postives = 161/204 (78.92%), Query Frame = 1


Query: 1   MSTRQAASKWLKRLIFRSTVLHRASESSVSVNVSILSSRCKVKSSSCNNGNGFHDGYLNG 60
           M TRQAASKWLKRL FRST  H  S +    NVSI SSRC  KSSS  N NG+HDGYLN 
Sbjct: 1   MYTRQAASKWLKRLSFRSTAFHHTSGAPNFPNVSIFSSRCNGKSSSRKNSNGYHDGYLND 60

Query: 61  FPWVLLSGPAAAIILGINSNPVLAKDASFKPSSENGIEDSDTIGLRKVEDGS-------- 120
           FPWVLLSGPA+AIILGINSNPVLA++ASFKPSSENGIED +T+GLRKVEDGS        
Sbjct: 61  FPWVLLSGPASAIILGINSNPVLAEEASFKPSSENGIEDGETVGLRKVEDGSVVSNLHTS 120

Query: 121 ---------------GRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTF 180
                          GRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTF
Sbjct: 121 KWRVFTDTARDLFLQGRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTF 180

Query: 181 DKAEPMYLEAINILEESYGTEDIR 182
           DKAEPMYLEAI ILEESYGTEDIR
Sbjct: 181 DKAEPMYLEAIKILEESYGTEDIR 204

The following BLAST results are available for this feature:

BLAST of Lsi05G002740 vs. Swiss-Prot


Match Name	E-value	Identity	Description
APBP2_RAT	1.1e-06	40.00	Amyloid protein-binding protein 2 OS=Rattus norvegicus GN=Appbp2 PE=2 SV=1	[more]
APBP2_HUMAN	1.1e-06	40.00	Amyloid protein-binding protein 2 OS=Homo sapiens GN=APPBP2 PE=1 SV=2	[more]
APBP2_MOUSE	1.1e-06	40.00	Amyloid protein-binding protein 2 OS=Mus musculus GN=Appbp2 PE=2 SV=1	[more]

BLAST of Lsi05G002740 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LA19_CUCSA	4.9e-75	75.49	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G187310 PE=4 SV=1	[more]
A0A059BTH0_EUCGR	8.4e-35	54.17	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02873 PE=4 SV=1	[more]
A0A118JUJ3_CYNCS	2.5e-34	70.00	Tetratricopeptide-like helical OS=Cynara cardunculus var. scolymus GN=Ccrd_00581...	[more]
V4SXR6_9ROSI	5.5e-34	47.32	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10011395mg PE=4 SV=1	[more]
V4UVW3_9ROSI	5.5e-34	47.32	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10011395mg PE=4 SV=1	[more]

BLAST of Lsi05G002740 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G37590.1	6.4e-34	48.52	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of Lsi05G002740 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659114569\|ref\|XP_008457119.1\|	1.2e-77	77.45	PREDICTED: kinesin light chain 3-like isoform X2 [Cucumis melo]	[more]
gi\|659114571\|ref\|XP_008457120.1\|	1.2e-77	77.45	PREDICTED: kinesin light chain 3-like isoform X3 [Cucumis melo]	[more]
gi\|659114567\|ref\|XP_008457118.1\|	1.2e-77	77.45	PREDICTED: kinesin light chain 1-like isoform X1 [Cucumis melo]	[more]
gi\|700202324\|gb\|KGN57457.1\|	7.0e-75	75.49	hypothetical protein Csa_3G187310 [Cucumis sativus]	[more]
gi\|778679900\|ref\|XP_011651210.1\|	7.0e-75	75.49	PREDICTED: uncharacterized protein LOC101207905 isoform X1 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR019734	TPR_repeat
IPR013026	TPR-contain_dom
IPR011990	TPR-like_helical_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006412	translation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005840	ribosome
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G002740.1	Lsi05G002740.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain	GENE3D	G3DSA:1.25.40.10		coord: 113..170 score: 6.
IPR011990	Tetratricopeptide-like helical domain	unknown	SSF48452	TPR-like	coord: 112..176 score: 1.6
IPR013026	Tetratricopeptide repeat-containing domain	PROFILE	PS50293	TPR_REGION	coord: 141..174 score: 8
IPR019734	Tetratricopeptide repeat	PROFILE	PS50005	TPR	coord: 141..174 score: 8
None	No IPR available	PANTHER	PTHR19959	KINESIN LIGHT CHAIN	coord: 113..181 score: 2.1
None	No IPR available	PANTHER	PTHR19959:SF159	TETRATRICOPEPTIDE REPEAT DOMAIN-CONTAINING PROTEIN	coord: 113..181 score: 2.1
None	No IPR available	PFAM	PF13424	TPR_12	coord: 112..173 score: 4.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G002740	Csa3G187310	Cucumber (Chinese Long) v2	culsiB211
Lsi05G002740	CSPI03G17730	Wild cucumber (PI 183967)	cpilsiB209
Lsi05G002740	Cla013138	Watermelon (97103) v1	lsiwmB361
Lsi05G002740	ClCG05G010660	Watermelon (Charleston Gray)	lsiwcgB332
Lsi05G002740	Cp4.1LG02g16660	Cucurbita pepo (Zucchini)	cpelsiB470
Lsi05G002740	CsGy3G017720	Cucumber (Gy14) v2	cgyblsiB198
Lsi05G002740	Carg07428	Silver-seed gourd	carlsiB700

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G002740	Melon (DHL92) v3.6.1	lsimedB384
Lsi05G002740	Silver-seed gourd	carlsiB158
Lsi05G002740	Cucumber (Chinese Long) v3	cuclsiB230
Lsi05G002740	Watermelon (97103) v2	lsiwmbB329
Lsi05G002740	Wax gourd	lsiwgoB431
Lsi05G002740	Cucumber (Gy14) v1	cgylsiB144
Lsi05G002740	Cucurbita maxima (Rimu)	cmalsiB249
Lsi05G002740	Cucurbita maxima (Rimu)	cmalsiB440
Lsi05G002740	Cucurbita moschata (Rifu)	cmolsiB237
Lsi05G002740	Cucurbita moschata (Rifu)	cmolsiB430
Lsi05G002740	Cucurbita pepo (Zucchini)	cpelsiB511
Lsi05G002740	Melon (DHL92) v3.5.1	lsimeB368