Csa3G187310 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G187310
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Tetratricopeptide repeat family; contains IPR011990 (Tetratricopeptide-like helical)
Location	Chr3 : 13223455 .. 13227074 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGCCCCCGTTAGGAGTAAGGAAAACCGTACAGTACAGCTAAAACCCCTTTAAACCCTTTTCGTCTTCCTCTCAACCTTACCTTCCATTCTATTCCCTGTCACTCGAGATACAGCCCGAAGCAAGGCAGAGATGTACACTAGACAAGCAGCTTCAAAATGGTTAAAGAGATTAAGCTTTCGCTCTACAGCATTCCATCACACTTCGGGAGCTCCCAATTTTCCTAACGTATCAATCTTCTCTTCTCGCTGTACGTAATTCAAGCCTTTTCATTTTCTACCCAACTATACTTGTTGATACAAAAGCGTTGAACCTGCAATGATGTGAATTACACAATGTTCGATGTGGGTTTTCATCCAAAGCTGAATTGCCATTAGTATCAGCTATTTTATAATACGAATCATGTTCTGCACTATAGGAGTTAGTAAAGACATTGTTATTAATCTCGGACTACGAAGTTCTGTTTGAACCAGGGTTCTGAATTTTTACAAGCGTGGACAAATGGTTGAAGGGTTCTTGAATTGATCCACAATTGCACTGAATGGCTGTTTATGCTTGTATATTTTTGTTTTTTCTTGCAGGCAACGGGAAATCTTCTTCGCGTAAGAATAGTAATGGCTATCATGATGGTTATCTCAATGATTTTCCATGGGTTCTTTTGTCTGGACCTGCTTCAGGTTTGCTCTTTTCACTGTTATATTTTAGTGTTTCCATTTAGAGATTGTTACTGAGGTGTTTGATTTTAGCATTTGATTTGAAGTGATCATCAAATTTAAACTAAAAACAAGCTAATTTTCTTTTCATTCTGGAACTTTCTTTATCTTCATCTGATGCTGGTATTTCTTAAACTAAAATAAAATGACATTTCTGTTGGTATTTCTATGAAATATAGCAAAAATTACCCGAGTTTGAGATAACAACAACGGAATCATTACATCCGGATAATAATAAAAGGAAATATAGAATCTGACCGCCAGCACATTTGAGAGAAATGGGAATCCTCTGCTAAAGCTGCAGCTGACTCCAGAATGACCACCCACACCCAACCAGTTTGCCAACACCTCTACATAAGCTTTCAGCTGACTCCACTGGTCTTGCATAACAACTTTTGTCATCCGCTAGCAGCTTGTTTCTTGTGAACTCCCTCATTTGGCTTTTCTCATATGTGTGTATGAGGGGTTCTCAAATGCTCCTAGGGGTGCCATGAGGTTTTCTTAAGTTGTGCAAAGCCATCTAGAAGCAATTTTGAAAATTATTGAAATATGGATATCTTTAATTACTATCCTAAGAAATAAGGAAACTGATATTTGATATCTCCAAAGTTCTCCTTAGAAGAATGGATGAATGGGACATCTGAGAGTGCATATCCATTGTTATAACTGTTTGACGTGAAAATAATTCTATCAAAATCAGCTAATGGGAGAGGAGAGAAACAGGAGAGTTAGGGGAGGGTGAATGTGTTGAAGGGCTGCAGGTGTGCCTGAAGAAATTGGGGTGATAGGGAACCAGAGAGGCAACCCCATTATCGGAGATTTAGAGCTAACAGAGTATTATTCAACTGACACCCATTTTTCCCGCCATTTTGTTGAGATTCTCAAATATTCTGTTTGTTTTCCATTATATATAGCAGTGTGCATTACTGAAATTTTGTTGGTGGGATAGATGTATGTTTTTGTAAAACCTTTTTGTGGTTCTTGTTTTGGATTCTTTCATCAGCTATTTCATGTAGTTTTTTGTATTTCTTAATAAATTTGTCCATAATCTACAAAAAGGGGGACAGAGAAGGAATTGCCAATGCCGAAGATTGATAATTTGTTGTAATGACATCCATTGACCTCTGTGATGCAGCTATTATTCTTGGAATAAACTCAAATCCTGTTCTAGCTGAAGAAGCATCATTTAAGCCAAGTTCGGAAAATGGTATTGAGGATGGTGAGACTGTTGGACTACGCAAAGTGGAGGATGGTTCTGTGGTATCGAATTTACATACTTCAAAGTGGAGGGTTTTTACTGATACTGCTCGGGACTTATTTCTGCAGGCAAGCAGTATTTCTTTTACCTTTTAGCAGTTACCATCTTTAATGGCACAAAGAAGAATTTTAACATTTTGTTTACTTAGGGAAGACTTGAAGACGCGGAAAAATATTTTATCTCTGCGATTCAAGAAGCTAAAGAAGGTTTTGGGGAGAGAGATCCTCATGTTGCATCTGCTTTCAACAATCTGGTACTCTAGCTTAAGGGTTTTCTAATATTTTAAGTTTTGATTATTTTACCCTTTTCAAATTGTAGATTTAAACTTTCATGCAGATACTGAATGAGCCTAATGGAATAACTTTTCTTTGAACCAAGACGTCAGATACAGTATTATTTTTAGTAGAACCTCTATTTTGATGAATTATGTTGTTTTGGTTCTCGGTCGTTATAAATCCGGGAGTTTAGACATTTTTACTTGCATTGAAGTCTTCATGTAGTTTCTTTGCACAATTTAATGACTTTTCTTTAATCAAATAAAAGAAACCAAAATATTCATAGGATACAAATCCCAAAAGTATGTGTTTTTGTAGTTACATATAGTATCAAAATTCATTAGATTCAGTTATCAACAAATTTTTTCCATATTTACATTTTGTGATCCTATCATTCACATGAATTGAAGTGGAACCTTGGTGCTTAGATTTCAGAAATGGATCTAATATTAAAACTCTTTACTTTGGTTGGAACCTATGATCAAGAACTGTTGTGAAATGATGCAATTTGATTTAAATTGTGGAATCACAATTGATAAATATGTTTTGCTATTCTTTTTTTAGGCTGAACTGTATAGAGTCATGAAAACATTTGACAAAGCGGAGCCCATGTATTTGGAAGCCATTAAGATACTGGAGGAATCCTATGGCACTGAAGATATAAGGTTCTTGAATCCTGAAAATTTGTTTTTTTTTTGTAGAAAACCTTTTATTTTTTCCTTACATGATCTAGAATTATCCTTTTTATTGGCTTTATTGCTAACATGGATTGTTTGTGCCTAGAGGATAGCACATACATATTGTGAAAGAGCTTTGTTTTATGCATGAAAGTGACATTTTCTTCTCTAATTTCCTATGGTATGTGAAGGAATTGATAGGCCTCGTAACACCAAGGTGTACGTACACATAAGAGGAAAGAGAGAAAAGGGGTGTGTGATACGTGTAAGGGAATTGTTGAGTGGTGTGGGCTTATAGGAATATTGTTAGTTAGGGGCCAGTTATAGGAGTATTTATGGCGTGAGGTTGTAGGAGTGAATCATCTTTTTGCTATTTTCTCTTTGGTTGTAATAGCTGTCTGTAAGAAGCTTAGGATTGATTGGGGCTCTCGAATTCTCCTACTGTGTTGATAAATAAATTGTTTAGGCTAAGGCCTATCGATTTGGTATCATAGCAGTAAGATTTGGGCAGAGTGGTTAAGATGGAAGGTAGAGTAAGTGCGTTGGAGGAGAAGATGGAGGAAATCGATGACAACCAATCATGGTTGGATTCGAAGGTGGAGGCTAGATTTAAGGAAGCGAATGGGAGGTTCGTGGTAGTGAATGAGCAGATGAGTTTAGTGTTATCGCATTTGGATGTGTTAATGATCGTGGATTGA

mRNA sequence

ATGTACACTAGACAAGCAGCTTCAAAATGGTTAAAGAGATTAAGCTTTCGCTCTACAGCATTCCATCACACTTCGGGAGCTCCCAATTTTCCTAACGTATCAATCTTCTCTTCTCGCTGCAACGGGAAATCTTCTTCGCGTAAGAATAGTAATGGCTATCATGATGGTTATCTCAATGATTTTCCATGGGTTCTTTTGTCTGGACCTGCTTCAGCTATTATTCTTGGAATAAACTCAAATCCTGTTCTAGCTGAAGAAGCATCATTTAAGCCAAGTTCGGAAAATGGTATTGAGGATGGTGAGACTGTTGGACTACGCAAAGTGGAGGATGGTTCTGTGGTATCGAATTTACATACTTCAAAGTGGAGGGTTTTTACTGATACTGCTCGGGACTTATTTCTGCAGGGAAGACTTGAAGACGCGGAAAAATATTTTATCTCTGCGATTCAAGAAGCTAAAGAAGGTTTTGGGGAGAGAGATCCTCATGTTGCATCTGCTTTCAACAATCTGGCTGAACTGTATAGAGTCATGAAAACATTTGACAAAGCGGAGCCCATGTATTTGGAAGCCATTAAGATACTGGAGGAATCCTATGGCACTGAAGATATAAGAGTGGTTAAGATGGAAGGTAGAGTAAGTGCGTTGGAGGAGAAGATGGAGGAAATCGATGACAACCAATCATGGTTGGATTCGAAGGTGGAGGCTAGATTTAAGGAAGCGAATGGGAGGTTCGTGGTAGTGAATGAGCAGATGAGTTTAGTGTTATCGCATTTGGATGTGTTAATGATCGTGGATTGA

Coding sequence (CDS)

ATGTACACTAGACAAGCAGCTTCAAAATGGTTAAAGAGATTAAGCTTTCGCTCTACAGCATTCCATCACACTTCGGGAGCTCCCAATTTTCCTAACGTATCAATCTTCTCTTCTCGCTGCAACGGGAAATCTTCTTCGCGTAAGAATAGTAATGGCTATCATGATGGTTATCTCAATGATTTTCCATGGGTTCTTTTGTCTGGACCTGCTTCAGCTATTATTCTTGGAATAAACTCAAATCCTGTTCTAGCTGAAGAAGCATCATTTAAGCCAAGTTCGGAAAATGGTATTGAGGATGGTGAGACTGTTGGACTACGCAAAGTGGAGGATGGTTCTGTGGTATCGAATTTACATACTTCAAAGTGGAGGGTTTTTACTGATACTGCTCGGGACTTATTTCTGCAGGGAAGACTTGAAGACGCGGAAAAATATTTTATCTCTGCGATTCAAGAAGCTAAAGAAGGTTTTGGGGAGAGAGATCCTCATGTTGCATCTGCTTTCAACAATCTGGCTGAACTGTATAGAGTCATGAAAACATTTGACAAAGCGGAGCCCATGTATTTGGAAGCCATTAAGATACTGGAGGAATCCTATGGCACTGAAGATATAAGAGTGGTTAAGATGGAAGGTAGAGTAAGTGCGTTGGAGGAGAAGATGGAGGAAATCGATGACAACCAATCATGGTTGGATTCGAAGGTGGAGGCTAGATTTAAGGAAGCGAATGGGAGGTTCGTGGTAGTGAATGAGCAGATGAGTTTAGTGTTATCGCATTTGGATGTGTTAATGATCGTGGATTGA

Protein sequence

MYTRQAASKWLKRLSFRSTAFHHTSGAPNFPNVSIFSSRCNGKSSSRKNSNGYHDGYLNDFPWVLLSGPASAIILGINSNPVLAEEASFKPSSENGIEDGETVGLRKVEDGSVVSNLHTSKWRVFTDTARDLFLQGRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAIKILEESYGTEDIRVVKMEGRVSALEEKMEEIDDNQSWLDSKVEARFKEANGRFVVVNEQMSLVLSHLDVLMIVD*

Homology

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BLAST of Csa3G187310 vs. Swiss-Prot
Match: APBP2_HUMAN (Amyloid protein-binding protein 2 OS=Homo sapiens GN=APPBP2 PE=1 SV=2)

HSP 1 Score: 58.9 bits (141), Expect = 9.6e-08
Identity = 30/81 (37.04%), Postives = 48/81 (59.26%), Query Frame = 1


Query: 135 QGRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAIKIL 194
           Q  L++A    +S++Q AK+ FGE +   A  + NL  LY+ M+ F +AE M+++AI+I 
Sbjct: 400 QRLLQEAHDLHLSSLQLAKKAFGEFNVQTAKHYGNLGRLYQSMRKFKEAEEMHIKAIQIK 459

Query: 195 EESYGTEDIRVVKMEGRVSAL 216
           E+  G ED  V    G +++L
Sbjct: 460 EQLLGQEDYEVALSVGHLASL 480

HSP 2 Score: 40.0 bits (92), Expect = 4.6e-02
Identity = 22/64 (34.38%), Postives = 36/64 (56.25%), Query Frame = 1


Query: 137 RLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRV-MKTFDKAEPMYLEAIKILE 196
           + ++AE+  I AIQ  ++  G+ D  VA +  +LA LY   M  ++ AE +YL +I I +
Sbjct: 444 KFKEAEEMHIKAIQIKEQLLGQEDYEVALSVGHLASLYNYDMNQYENAEKLYLRSIAIGK 503

Query: 197 ESYG 200
           + +G
Sbjct: 504 KLFG 507

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BLAST of Csa3G187310 vs. Swiss-Prot
Match: APBP2_RAT (Amyloid protein-binding protein 2 OS=Rattus norvegicus GN=Appbp2 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 9.6e-08
Identity = 30/81 (37.04%), Postives = 48/81 (59.26%), Query Frame = 1


Query: 135 QGRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAIKIL 194
           Q  L++A    +S++Q AK+ FGE +   A  + NL  LY+ M+ F +AE M+++AI+I 
Sbjct: 400 QRLLQEAHDLHLSSLQLAKKAFGEFNVQTAKHYGNLGRLYQSMRKFKEAEEMHIKAIQIK 459

Query: 195 EESYGTEDIRVVKMEGRVSAL 216
           E+  G ED  V    G +++L
Sbjct: 460 EQLLGQEDYEVALSVGHLASL 480

HSP 2 Score: 40.0 bits (92), Expect = 4.6e-02
Identity = 22/64 (34.38%), Postives = 36/64 (56.25%), Query Frame = 1


Query: 137 RLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRV-MKTFDKAEPMYLEAIKILE 196
           + ++AE+  I AIQ  ++  G+ D  VA +  +LA LY   M  ++ AE +YL +I I +
Sbjct: 444 KFKEAEEMHIKAIQIKEQLLGQEDYEVALSVGHLASLYNYDMNQYENAEKLYLRSIAIGK 503

Query: 197 ESYG 200
           + +G
Sbjct: 504 KLFG 507

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BLAST of Csa3G187310 vs. Swiss-Prot
Match: APBP2_MOUSE (Amyloid protein-binding protein 2 OS=Mus musculus GN=Appbp2 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 9.6e-08
Identity = 30/81 (37.04%), Postives = 48/81 (59.26%), Query Frame = 1


Query: 135 QGRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAIKIL 194
           Q  L++A    +S++Q AK+ FGE +   A  + NL  LY+ M+ F +AE M+++AI+I 
Sbjct: 400 QRLLQEAHDLHLSSLQLAKKAFGEFNVQTAKHYGNLGRLYQSMRKFKEAEEMHIKAIQIK 459

Query: 195 EESYGTEDIRVVKMEGRVSAL 216
           E+  G ED  V    G +++L
Sbjct: 460 EQLLGQEDYEVALSVGHLASL 480

HSP 2 Score: 40.0 bits (92), Expect = 4.6e-02
Identity = 22/64 (34.38%), Postives = 36/64 (56.25%), Query Frame = 1


Query: 137 RLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRV-MKTFDKAEPMYLEAIKILE 196
           + ++AE+  I AIQ  ++  G+ D  VA +  +LA LY   M  ++ AE +YL +I I +
Sbjct: 444 KFKEAEEMHIKAIQIKEQLLGQEDYEVALSVGHLASLYNYDMNQYENAEKLYLRSIAIGK 503

Query: 197 ESYG 200
           + +G
Sbjct: 504 KLFG 507

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BLAST of Csa3G187310 vs. TrEMBL
Match: A0A0A0LA19_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G187310 PE=4 SV=1)

HSP 1 Score: 528.1 bits (1359), Expect = 6.2e-147
Identity = 265/265 (100.00%), Postives = 265/265 (100.00%), Query Frame = 1


Query: 1   MYTRQAASKWLKRLSFRSTAFHHTSGAPNFPNVSIFSSRCNGKSSSRKNSNGYHDGYLND 60
           MYTRQAASKWLKRLSFRSTAFHHTSGAPNFPNVSIFSSRCNGKSSSRKNSNGYHDGYLND
Sbjct: 1   MYTRQAASKWLKRLSFRSTAFHHTSGAPNFPNVSIFSSRCNGKSSSRKNSNGYHDGYLND 60

Query: 61  FPWVLLSGPASAIILGINSNPVLAEEASFKPSSENGIEDGETVGLRKVEDGSVVSNLHTS 120
           FPWVLLSGPASAIILGINSNPVLAEEASFKPSSENGIEDGETVGLRKVEDGSVVSNLHTS
Sbjct: 61  FPWVLLSGPASAIILGINSNPVLAEEASFKPSSENGIEDGETVGLRKVEDGSVVSNLHTS 120

Query: 121 KWRVFTDTARDLFLQGRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTF 180
           KWRVFTDTARDLFLQGRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTF
Sbjct: 121 KWRVFTDTARDLFLQGRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTF 180

Query: 181 DKAEPMYLEAIKILEESYGTEDIRVVKMEGRVSALEEKMEEIDDNQSWLDSKVEARFKEA 240
           DKAEPMYLEAIKILEESYGTEDIRVVKMEGRVSALEEKMEEIDDNQSWLDSKVEARFKEA
Sbjct: 181 DKAEPMYLEAIKILEESYGTEDIRVVKMEGRVSALEEKMEEIDDNQSWLDSKVEARFKEA 240

Query: 241 NGRFVVVNEQMSLVLSHLDVLMIVD 266
           NGRFVVVNEQMSLVLSHLDVLMIVD
Sbjct: 241 NGRFVVVNEQMSLVLSHLDVLMIVD 265

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BLAST of Csa3G187310 vs. TrEMBL
Match: M1B0N3_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400013236 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 2.1e-54
Identity = 124/228 (54.39%), Postives = 158/228 (69.30%), Query Frame = 1


Query: 1   MYTRQAASKWLKRL----SFRSTAFHHTSGAPNFPNVSIFSSRCNGKSSSRKNSNGYHDG 60
           M+ RQA++  +KR      F +    H S     PN    + +C  + SS   S GY   
Sbjct: 1   MFLRQASANLIKRFRISPQFLAATPLHRSSPVLLPN----AGQC--RFSSELGSGGY--- 60

Query: 61  YLNDFPWVLLSGPASAIILGINSNPVLAEEASFKPSSENGIEDGETVGLRKVEDGSVVSN 120
           + + F W+ L GPA A+ILG+N +P LAEE S   ++ +   D E  GLRK+EDGSVVSN
Sbjct: 61  FSDSFRWIFLFGPA-AVILGVNVSPALAEEVSTPATAGSDGVDVEISGLRKIEDGSVVSN 120

Query: 121 LHTSKWRVFTDTARDLFLQGRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRV 180
           +HTSKWRVFTD+ RDLFLQG+LE+AEK F+SA+QEAKEGFG+RDPHVASA+NNLAELYRV
Sbjct: 121 IHTSKWRVFTDSGRDLFLQGKLEEAEKLFLSALQEAKEGFGDRDPHVASAYNNLAELYRV 180

Query: 181 MKTFDKAEPMYLEAIKILEESYGTEDIRV---VKMEGRVSALEEKMEE 222
            K FDKAEPMYLEAI ILEES+G ED+RV   +   G+   ++ K+E+
Sbjct: 181 EKAFDKAEPMYLEAIIILEESFGQEDVRVAAALHNLGQFYLMQRKLEQ 218

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BLAST of Csa3G187310 vs. TrEMBL
Match: A0A0V0IH18_SOLCH (Putative nephrocystin-3-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 4.7e-54
Identity = 126/228 (55.26%), Postives = 159/228 (69.74%), Query Frame = 1


Query: 1   MYTRQAASKWLK--RLSFRSTAFH--HTSGAPNFPNVSIFSSRCNGKSSSRKNSNGYHDG 60
           M+ RQA++  +K  R S +S A    H S     PN    + +C  + SS   S GY   
Sbjct: 1   MFLRQASANLIKKXRXSXQSLAAXXLHRSSPVLLPN----AGQC--RFSSELGSGGY--- 60

Query: 61  YLNDFPWVLLSGPASAIILGINSNPVLAEEASFKPSSENGIEDGETVGLRKVEDGSVVSN 120
           + + F W+ L GPA A+ILG+N +P LAEE S   +  +   D E  GLRK+EDGSVVSN
Sbjct: 61  FSDSFRWIFLFGPA-AVILGVNVSPALAEEVSTPATXGSDGVDVEISGLRKIEDGSVVSN 120

Query: 121 LHTSKWRVFTDTARDLFLQGRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRV 180
           +HTSKWRVFTD+ RDLFLQG+LE+AEK F+SA+QEAKEGFG+RDPHVASA+NNLAELYRV
Sbjct: 121 IHTSKWRVFTDSGRDLFLQGKLEEAEKLFLSALQEAKEGFGDRDPHVASAYNNLAELYRV 180

Query: 181 MKTFDKAEPMYLEAIKILEESYGTEDIRV---VKMEGRVSALEEKMEE 222
            K FDKAEPMYLEAI ILEES+G ED+RV   +   G+   ++ K+E+
Sbjct: 181 KKAFDKAEPMYLEAIIILEESFGQEDVRVAAALHNLGQFYLMQRKLEQ 218

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BLAST of Csa3G187310 vs. TrEMBL
Match: K4D5U4_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 2.0e-52
Identity = 124/228 (54.39%), Postives = 156/228 (68.42%), Query Frame = 1


Query: 1   MYTRQAASKWLKRL----SFRSTAFHHTSGAPNFPNVSIFSSRCNGKSSSRKNSNGYHDG 60
           M  RQA++  +KR      F +    H S     PN    + +C  + SS   S GY   
Sbjct: 1   MLLRQASASLIKRFRISPKFLAATPLHRSSPVLLPN----AGQC--RFSSELGSGGY--- 60

Query: 61  YLNDFPWVLLSGPASAIILGINSNPVLAEEASFKPSSENGIEDGETVGLRKVEDGSVVSN 120
           + + F W+ L GPA A+ILG+N +P LAEE S      +GI D E  GLRK+EDGSVVSN
Sbjct: 61  FSDSFRWIFLFGPA-AVILGVNVSPALAEEVS------DGI-DVEISGLRKIEDGSVVSN 120

Query: 121 LHTSKWRVFTDTARDLFLQGRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRV 180
           +HTSKWRVFTD+ RD FLQG+L+ AEK F++A+QEAKEGFG+RDPHVASA+NNLAELYRV
Sbjct: 121 IHTSKWRVFTDSGRDFFLQGKLKKAEKLFLAALQEAKEGFGDRDPHVASAYNNLAELYRV 180

Query: 181 MKTFDKAEPMYLEAIKILEESYGTEDIRV---VKMEGRVSALEEKMEE 222
            K FDKAEPMYLEAIKILEES+G ED+RV   +   G+   ++ K+E+
Sbjct: 181 KKAFDKAEPMYLEAIKILEESFGQEDVRVAAALHNLGQFYLMQRKLEQ 211

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BLAST of Csa3G187310 vs. TrEMBL
Match: K4D5U4_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 43.5 bits (101), Expect = 4.6e-01
Identity = 20/61 (32.79%), Postives = 35/61 (57.38%), Query Frame = 1


Query: 139 EDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAIKILEESY 198
           + AE  ++ AI+  +E FG+ D  VA+A +NL + Y + +  ++A  +Y  A+KI     
Sbjct: 168 DKAEPMYLEAIKILEESFGQEDVRVAAALHNLGQFYLMQRKLEQARGVYERALKIKRRVL 227

Query: 199 G 200
           G
Sbjct: 228 G 228

HSP 2 Score: 212.2 bits (539), Expect = 7.6e-52
Identity = 122/232 (52.59%), Postives = 160/232 (68.97%), Query Frame = 1


Query: 1   MYTRQAASKWLKRLSFRSTAFHHTSGAPNFPNVSIFSSRCNGKSSSRK--------NSNG 60
           MY R+AA   L+R+   S +   TS +P  P  S+  +     S SRK        N + 
Sbjct: 1   MYLRKAAVSLLRRVRLPSHSIF-TSVSP--PTTSMAIATPLPFSLSRKIQFPNQFGNGSS 60

Query: 61  YHDGYLNDFPWVLLSGPASAIILGINSNPVLAEEASFKPSSENGIEDGETVGLRKVEDGS 120
           +   Y +   W +LS  A AIILGIN +PV A++ S + ++E+ I+     GLRK+EDGS
Sbjct: 61  WSTTYADPPIWTILSIQA-AIILGINVHPVFADDGSNQTNTESDIQGANISGLRKIEDGS 120

Query: 121 VVSNLHTSKWRVFTDTARDLFLQGRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAE 180
           V+SN+HTSKWR+FTD  RD FLQG+LE+AEK+F+SAIQEAKEGFGERDPHVASA NNLAE
Sbjct: 121 VISNVHTSKWRIFTDNGRDYFLQGKLEEAEKFFLSAIQEAKEGFGERDPHVASACNNLAE 180

Query: 181 LYRVMKTFDKAEPMYLEAIKILEESYGTEDIRV---VKMEGRVSALEEKMEE 222
           LYRV K FDKAEP+YL+AI+ILEE++G+EDIRV   +   G+   ++ K+EE
Sbjct: 181 LYRVKKAFDKAEPLYLDAIRILEEAFGSEDIRVGVALHNLGQFYLVQRKLEE 228

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BLAST of Csa3G187310 vs. TAIR10
Match: AT5G37590.1 (AT5G37590.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 194.9 bits (494), Expect = 6.3e-50
Identity = 107/193 (55.44%), Postives = 134/193 (69.43%), Query Frame = 1


Query: 36  FSSRCNGKSS-SRKNSNGYHDGYLNDFP---WVLLSGPASAIILGINSNPVLAEEASFKP 95
           F++  +GK   S +N  G H   L+      W++LSG A+  ILG   N VLAE+ S K 
Sbjct: 32  FANPLSGKPRISYQNDYGGHRTNLHLLDSRLWIILSGQAA--ILGFCGNTVLAEDESMKS 91

Query: 96  SSENGIEDGETVGLRKVEDGSVVSNLHTSKWRVFTDTARDLFLQGRLEDAEKYFISAIQE 155
            S + +++    GL K+EDGSVVSN+HTSKWRVFTD+ RD F QG+LE AE+ F SAIQE
Sbjct: 92  KSGDNMDESGNTGLEKIEDGSVVSNIHTSKWRVFTDSGRDYFFQGKLEPAERLFGSAIQE 151

Query: 156 AKEGFGERDPHVASAFNNLAELYRVMKTFDKAEPMYLEAIKILEESYGTEDIRV---VKM 215
           AKEGFGE+DPHVASA NNLAELYRV K FDKAEP+YLEA+ ILEE YG +D+RV   +  
Sbjct: 152 AKEGFGEKDPHVASACNNLAELYRVKKEFDKAEPLYLEAVSILEEFYGPDDVRVGATLHN 211

Query: 216 EGRVSALEEKMEE 222
            G++  ++ K+EE
Sbjct: 212 LGQLYLVQRKLEE 222

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BLAST of Csa3G187310 vs. NCBI nr
Match: gi|700202324|gb|KGN57457.1| (hypothetical protein Csa_3G187310 [Cucumis sativus])

HSP 1 Score: 528.1 bits (1359), Expect = 8.9e-147
Identity = 265/265 (100.00%), Postives = 265/265 (100.00%), Query Frame = 1


Query: 1   MYTRQAASKWLKRLSFRSTAFHHTSGAPNFPNVSIFSSRCNGKSSSRKNSNGYHDGYLND 60
           MYTRQAASKWLKRLSFRSTAFHHTSGAPNFPNVSIFSSRCNGKSSSRKNSNGYHDGYLND
Sbjct: 1   MYTRQAASKWLKRLSFRSTAFHHTSGAPNFPNVSIFSSRCNGKSSSRKNSNGYHDGYLND 60

Query: 61  FPWVLLSGPASAIILGINSNPVLAEEASFKPSSENGIEDGETVGLRKVEDGSVVSNLHTS 120
           FPWVLLSGPASAIILGINSNPVLAEEASFKPSSENGIEDGETVGLRKVEDGSVVSNLHTS
Sbjct: 61  FPWVLLSGPASAIILGINSNPVLAEEASFKPSSENGIEDGETVGLRKVEDGSVVSNLHTS 120

Query: 121 KWRVFTDTARDLFLQGRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTF 180
           KWRVFTDTARDLFLQGRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTF
Sbjct: 121 KWRVFTDTARDLFLQGRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTF 180

Query: 181 DKAEPMYLEAIKILEESYGTEDIRVVKMEGRVSALEEKMEEIDDNQSWLDSKVEARFKEA 240
           DKAEPMYLEAIKILEESYGTEDIRVVKMEGRVSALEEKMEEIDDNQSWLDSKVEARFKEA
Sbjct: 181 DKAEPMYLEAIKILEESYGTEDIRVVKMEGRVSALEEKMEEIDDNQSWLDSKVEARFKEA 240

Query: 241 NGRFVVVNEQMSLVLSHLDVLMIVD 266
           NGRFVVVNEQMSLVLSHLDVLMIVD
Sbjct: 241 NGRFVVVNEQMSLVLSHLDVLMIVD 265

[Close]

BLAST of Csa3G187310 vs. NCBI nr
Match: gi|778679900|ref|XP_011651210.1| (PREDICTED: uncharacterized protein LOC101207905 isoform X1 [Cucumis sativus])

HSP 1 Score: 414.1 bits (1063), Expect = 1.9e-112
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 1


Query: 1   MYTRQAASKWLKRLSFRSTAFHHTSGAPNFPNVSIFSSRCNGKSSSRKNSNGYHDGYLND 60
           MYTRQAASKWLKRLSFRSTAFHHTSGAPNFPNVSIFSSRCNGKSSSRKNSNGYHDGYLND
Sbjct: 1   MYTRQAASKWLKRLSFRSTAFHHTSGAPNFPNVSIFSSRCNGKSSSRKNSNGYHDGYLND 60

Query: 61  FPWVLLSGPASAIILGINSNPVLAEEASFKPSSENGIEDGETVGLRKVEDGSVVSNLHTS 120
           FPWVLLSGPASAIILGINSNPVLAEEASFKPSSENGIEDGETVGLRKVEDGSVVSNLHTS
Sbjct: 61  FPWVLLSGPASAIILGINSNPVLAEEASFKPSSENGIEDGETVGLRKVEDGSVVSNLHTS 120

Query: 121 KWRVFTDTARDLFLQGRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTF 180
           KWRVFTDTARDLFLQGRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTF
Sbjct: 121 KWRVFTDTARDLFLQGRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTF 180

Query: 181 DKAEPMYLEAIKILEESYGTEDIRV 206
           DKAEPMYLEAIKILEESYGTEDIRV
Sbjct: 181 DKAEPMYLEAIKILEESYGTEDIRV 205

[Close]

BLAST of Csa3G187310 vs. NCBI nr
Match: gi|659114569|ref|XP_008457119.1| (PREDICTED: kinesin light chain 3-like isoform X2 [Cucumis melo])

HSP 1 Score: 393.7 bits (1010), Expect = 2.6e-106
Identity = 197/205 (96.10%), Postives = 198/205 (96.59%), Query Frame = 1


Query: 1   MYTRQAASKWLKRLSFRSTAFHHTSGAPNFPNVSIFSSRCNGKSSSRKNSNGYHDGYLND 60
           MYTRQAASKWLKRLSFRSTAFH TS APN PNVSIFSSRCN KSSSRKNSNGYHDGYLN 
Sbjct: 1   MYTRQAASKWLKRLSFRSTAFHLTSEAPNLPNVSIFSSRCNVKSSSRKNSNGYHDGYLNG 60

Query: 61  FPWVLLSGPASAIILGINSNPVLAEEASFKPSSENGIEDGETVGLRKVEDGSVVSNLHTS 120
           FPWV LSGPA+AIILGINSNPVLAEEASFKPSSENGIEDGETVGLRKVEDGSVVSNLHTS
Sbjct: 61  FPWVFLSGPAAAIILGINSNPVLAEEASFKPSSENGIEDGETVGLRKVEDGSVVSNLHTS 120

Query: 121 KWRVFTDTARDLFLQGRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTF 180
           KWRVFTDTARDLFLQGRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTF
Sbjct: 121 KWRVFTDTARDLFLQGRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTF 180

Query: 181 DKAEPMYLEAIKILEESYGTEDIRV 206
           DKAEPMYLEAI ILEESYGTEDIRV
Sbjct: 181 DKAEPMYLEAINILEESYGTEDIRV 205

[Close]

BLAST of Csa3G187310 vs. NCBI nr
Match: gi|659114567|ref|XP_008457118.1| (PREDICTED: kinesin light chain 1-like isoform X1 [Cucumis melo])

HSP 1 Score: 393.7 bits (1010), Expect = 2.6e-106
Identity = 197/205 (96.10%), Postives = 198/205 (96.59%), Query Frame = 1


Query: 1   MYTRQAASKWLKRLSFRSTAFHHTSGAPNFPNVSIFSSRCNGKSSSRKNSNGYHDGYLND 60
           MYTRQAASKWLKRLSFRSTAFH TS APN PNVSIFSSRCN KSSSRKNSNGYHDGYLN 
Sbjct: 1   MYTRQAASKWLKRLSFRSTAFHLTSEAPNLPNVSIFSSRCNVKSSSRKNSNGYHDGYLNG 60

Query: 61  FPWVLLSGPASAIILGINSNPVLAEEASFKPSSENGIEDGETVGLRKVEDGSVVSNLHTS 120
           FPWV LSGPA+AIILGINSNPVLAEEASFKPSSENGIEDGETVGLRKVEDGSVVSNLHTS
Sbjct: 61  FPWVFLSGPAAAIILGINSNPVLAEEASFKPSSENGIEDGETVGLRKVEDGSVVSNLHTS 120

Query: 121 KWRVFTDTARDLFLQGRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTF 180
           KWRVFTDTARDLFLQGRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTF
Sbjct: 121 KWRVFTDTARDLFLQGRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTF 180

Query: 181 DKAEPMYLEAIKILEESYGTEDIRV 206
           DKAEPMYLEAI ILEESYGTEDIRV
Sbjct: 181 DKAEPMYLEAINILEESYGTEDIRV 205

[Close]

BLAST of Csa3G187310 vs. NCBI nr
Match: gi|659114571|ref|XP_008457120.1| (PREDICTED: kinesin light chain 3-like isoform X3 [Cucumis melo])

HSP 1 Score: 393.7 bits (1010), Expect = 2.6e-106
Identity = 197/205 (96.10%), Postives = 198/205 (96.59%), Query Frame = 1


Query: 1   MYTRQAASKWLKRLSFRSTAFHHTSGAPNFPNVSIFSSRCNGKSSSRKNSNGYHDGYLND 60
           MYTRQAASKWLKRLSFRSTAFH TS APN PNVSIFSSRCN KSSSRKNSNGYHDGYLN 
Sbjct: 1   MYTRQAASKWLKRLSFRSTAFHLTSEAPNLPNVSIFSSRCNVKSSSRKNSNGYHDGYLNG 60

Query: 61  FPWVLLSGPASAIILGINSNPVLAEEASFKPSSENGIEDGETVGLRKVEDGSVVSNLHTS 120
           FPWV LSGPA+AIILGINSNPVLAEEASFKPSSENGIEDGETVGLRKVEDGSVVSNLHTS
Sbjct: 61  FPWVFLSGPAAAIILGINSNPVLAEEASFKPSSENGIEDGETVGLRKVEDGSVVSNLHTS 120

Query: 121 KWRVFTDTARDLFLQGRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTF 180
           KWRVFTDTARDLFLQGRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTF
Sbjct: 121 KWRVFTDTARDLFLQGRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNLAELYRVMKTF 180

Query: 181 DKAEPMYLEAIKILEESYGTEDIRV 206
           DKAEPMYLEAI ILEESYGTEDIRV
Sbjct: 181 DKAEPMYLEAINILEESYGTEDIRV 205

The following BLAST results are available for this feature:

BLAST of Csa3G187310 vs. Swiss-Prot


Match Name	E-value	Identity	Description
APBP2_HUMAN	9.6e-08	37.04	Amyloid protein-binding protein 2 OS=Homo sapiens GN=APPBP2 PE=1 SV=2	[more]
APBP2_RAT	9.6e-08	37.04	Amyloid protein-binding protein 2 OS=Rattus norvegicus GN=Appbp2 PE=2 SV=1	[more]
APBP2_MOUSE	9.6e-08	37.04	Amyloid protein-binding protein 2 OS=Mus musculus GN=Appbp2 PE=2 SV=1	[more]

BLAST of Csa3G187310 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LA19_CUCSA	6.2e-147	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G187310 PE=4 SV=1	[more]
M1B0N3_SOLTU	2.1e-54	54.39	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400013236 PE=4 SV=1	[more]
A0A0V0IH18_SOLCH	4.7e-54	55.26	Putative nephrocystin-3-like OS=Solanum chacoense PE=4 SV=1	[more]
K4D5U4_SOLLC	2.0e-52	54.39	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
K4D5U4_SOLLC	4.6e-01	32.79	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]

BLAST of Csa3G187310 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G37590.1	6.3e-50	55.44	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of Csa3G187310 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202324\|gb\|KGN57457.1\|	8.9e-147	100.00	hypothetical protein Csa_3G187310 [Cucumis sativus]	[more]
gi\|778679900\|ref\|XP_011651210.1\|	1.9e-112	100.00	PREDICTED: uncharacterized protein LOC101207905 isoform X1 [Cucumis sativus]	[more]
gi\|659114569\|ref\|XP_008457119.1\|	2.6e-106	96.10	PREDICTED: kinesin light chain 3-like isoform X2 [Cucumis melo]	[more]
gi\|659114567\|ref\|XP_008457118.1\|	2.6e-106	96.10	PREDICTED: kinesin light chain 1-like isoform X1 [Cucumis melo]	[more]
gi\|659114571\|ref\|XP_008457120.1\|	2.6e-106	96.10	PREDICTED: kinesin light chain 3-like isoform X3 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR013026	TPR-contain_dom
IPR019734	TPR_repeat

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006412	translation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005840	ribosome
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU160716	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G187310.1	Csa3G187310.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU160716	CU160716	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain	GENE3D	G3DSA:1.25.40.10		coord: 129..193 score: 2.
IPR011990	Tetratricopeptide-like helical domain	unknown	SSF48452	TPR-like	coord: 118..206 score: 5.06
IPR013026	Tetratricopeptide repeat-containing domain	PROFILE	PS50293	TPR_REGION	coord: 164..197 score: 9
IPR019734	Tetratricopeptide repeat	SMART	SM00028	tpr_5	coord: 164..197 score: 0.012coord: 122..155 score: 1
IPR019734	Tetratricopeptide repeat	PROFILE	PS50005	TPR	coord: 164..197 score: 8
None	No IPR available	unknown	Coil	Coil	coord: 205..225 scor
None	No IPR available	PANTHER	PTHR19959	KINESIN LIGHT CHAIN	coord: 122..205 score: 1.1
None	No IPR available	PANTHER	PTHR19959:SF159	TETRATRICOPEPTIDE REPEAT DOMAIN-CONTAINING PROTEIN	coord: 122..205 score: 1.1
None	No IPR available	PFAM	PF13424	TPR_12	coord: 129..196 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G187310	Cla013138	Watermelon (97103) v1	cuwmB243
Csa3G187310	ClCG05G010660	Watermelon (Charleston Gray)	cuwcgB230
Csa3G187310	Lsi05G002740	Bottle gourd (USVL1VR-Ls)	culsiB211
Csa3G187310	MELO3C031718.2	Melon (DHL92) v3.6.1	cumedB238
Csa3G187310	Cla97C05G092990	Watermelon (97103) v2	cuwmbB215
Csa3G187310	Bhi01G001319	Wax gourd	cuwgoB283
Csa3G187310	CSPI03G17730	Wild cucumber (PI 183967)	cpicuB120
Csa3G187310	Cucsa.108570	Cucumber (Gy14) v1	cgycuB132
Csa3G187310	CmaCh01G003370	Cucurbita maxima (Rimu)	cmacuB458
Csa3G187310	CmoCh01G003530	Cucurbita moschata (Rifu)	cmocuB445
Csa3G187310	Cp4.1LG02g16660	Cucurbita pepo (Zucchini)	cpecuB550
Csa3G187310	CsGy3G017720	Cucumber (Gy14) v2	cgybcuB109
Csa3G187310	Carg07428	Silver-seed gourd	carcuB0781

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G187310	Silver-seed gourd	carcuB0196
Csa3G187310	Cucurbita maxima (Rimu)	cmacuB245
Csa3G187310	Cucurbita moschata (Rifu)	cmocuB232
Csa3G187310	Melon (DHL92) v3.5.1	cumeB251
Csa3G187310	Cucurbita pepo (Zucchini)	cpecuB603