Carg07428 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg07428
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	kinesin light chain 3 isoform X3
Location	Cucurbita_argyrosperma_scaffold_019 : 765043 .. 766501 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACACCCATTAGCCTCTGTGGTGCAGCTATAATTCTTGGAATAAACTCAAATCCTGTCTTAGCTAAAGACGCACCCTCTAAGCCAAGTTCTGAAAATGGTATTGAGGAGAGTGACACTATTGGACTACGCAAAGTGGAGGATGGTTCTGTAATTTCAAATCTACATACTTCAAAGTGGAGGGTTTTTACTGATAATGCTCGGGACTTGTTTCTGCAGGCAAGCATGTTTCTTTTACCTTCACTAGCAGTTAATTTTTTTAATGATTTGCAGAAAGAAGTATCATAATCTTTTTCTTTAATTAGGGGAAACTTGAAGAAGCTGAAAGATTTTTTGTTTCTGCGATTCAAGAAGCTAAAGAAGGTTTTGGGGAGAGGGATCCTCATGTTGCTTCTGCCTTCAACAATCTGGTATTGTAGCTGCTGTATTTTCTAATCTTTTTCTTGTTTTACCTTTTTAGAATCATTGAGTAGAACTTTCCTGCAGTCACTGAATAACCTAATGGAATAAGATTTCTTCCAACCAAGATATTAGACAAAATATTTGGAGTAGTAAAATAACCTGCCTTTAGGCTGTTGCCCTCCAAGATTGGGAGGCTGTGCTTTATTAGATTGGTTGAGTAGAGGGAACCCTCACCCCTCTACCCTTAGGCTGTTCTCATTTTGTCAGTATATTTCTGTTTTAAATATTTTTTTATATTAAAGAAGCCCAGTCTTTAGATGAATCATATTATTTTGGTTATTAGTTATTATTAAACCTGGAGACTTTTTTGCTTCATCAAAGTCATCATTTAGTTTATATATATATATCAAGATACAGACTGATCGTTAATCAAAGAACAAACAAGAAAGTAAGGATGTAAATTCCAAAATGAGGTCTTCATGTTGTTGGAAATAGTATCTAAATTTGTTGGGCTAGATTACCTACAAGTTTTTGCCATATTTGCATTTGTGCGTTCCTATTATTTACATTAAATTGACGTAGAACCTAGGTTGTTAGAATTCAGGAATGGTTCTAATATCAAAACTTCTTTACTAAAATCAGGCATTTACCTTGCATAGAAAAATCTACAATCAAGGACTGTTATACGATAATGCCATTTATTTTAGATTGTGAAGCATTACTAAGTAATAAATACATTTTGCTATGCTCTTTTTAGGCAGAACTGTATAGAATGGTTAGTGACCACTGAAGGATGGCACTCATCATTCCCTTGACAGAAAGGCAGAGGCCTGCCCAGTATCTGGAGGCCGTTGAGTCGATAGACTGTGGATCCCGAGTGGTCAGGGGGACTGGAGGGGGAATGCCGGCTTATGGCTCTGAGACAAGTCTGAGTAGCCGAGCGAGGGCGTTCTTGGAACTCTATGCTATCGCACTTTTTATCTCATATGTAGTCACAACCCTGGGCACAAAAACATGGGTAGTTTACATCATTAACTACACCCTCGACATGAACTAG

mRNA sequence

ATGACACCCATTAGCCTCTGTGGTGCAGCTATAATTCTTGGAATAAACTCAAATCCTGTCTTAGCTAAAGACGCACCCTCTAAGCCAAGTTCTGAAAATGGTATTGAGGAGAGTGACACTATTGGACTACGCAAAGTGGAGGATGGTTCTGGGAAACTTGAAGAAGCTGAAAGATTTTTTGTTTCTGCGATTCAAGAAGCTAAAGAAGGTTTTGGGGAGAGGGATCCTCATGTTGCTTCTGCCTTCAACAATCTGAGGCCTGCCCAGTATCTGGAGGCCGTTGAGTCGATAGACTGTGGATCCCGAGTGGTCAGGGGGACTGGAGGGGGAATGCCGGCTTATGGCTCTGAGACAAGTCTGAGTAGCCGAGCGAGGGCGTTCTTGGAACTCTATGCTATCGCACTTTTTATCTCATATGTAGTCACAACCCTGGGCACAAAAACATGGGTAGTTTACATCATTAACTACACCCTCGACATGAACTAG

Coding sequence (CDS)

ATGACACCCATTAGCCTCTGTGGTGCAGCTATAATTCTTGGAATAAACTCAAATCCTGTCTTAGCTAAAGACGCACCCTCTAAGCCAAGTTCTGAAAATGGTATTGAGGAGAGTGACACTATTGGACTACGCAAAGTGGAGGATGGTTCTGGGAAACTTGAAGAAGCTGAAAGATTTTTTGTTTCTGCGATTCAAGAAGCTAAAGAAGGTTTTGGGGAGAGGGATCCTCATGTTGCTTCTGCCTTCAACAATCTGAGGCCTGCCCAGTATCTGGAGGCCGTTGAGTCGATAGACTGTGGATCCCGAGTGGTCAGGGGGACTGGAGGGGGAATGCCGGCTTATGGCTCTGAGACAAGTCTGAGTAGCCGAGCGAGGGCGTTCTTGGAACTCTATGCTATCGCACTTTTTATCTCATATGTAGTCACAACCCTGGGCACAAAAACATGGGTAGTTTACATCATTAACTACACCCTCGACATGAACTAG

Protein sequence

MTPISLCGAAIILGINSNPVLAKDAPSKPSSENGIEESDTIGLRKVEDGSGKLEEAERFFVSAIQEAKEGFGERDPHVASAFNNLRPAQYLEAVESIDCGSRVVRGTGGGMPAYGSETSLSSRARAFLELYAIALFISYVVTTLGTKTWVVYIINYTLDMN

Homology

[Close]

BLAST of Carg07428 vs. NCBI nr
Match: XP_022948435.1 (uncharacterized protein LOC111452120 [Cucurbita moschata])

HSP 1 Score: 136.7 bits (343), Expect = 6.8e-29
Identity = 77/100 (77.00%), Postives = 77/100 (77.00%), Query Frame = 0


Query: 9   AAIILGINSNPVLAKDAPSKPSSENGIEESDTIGLRKVEDGS------------------ 68
           AAIILGINSNPVLAKDAPSKPSSENGIEESDTIGLRKVEDGS                  
Sbjct: 71  AAIILGINSNPVLAKDAPSKPSSENGIEESDTIGLRKVEDGSVISNLHTSKWRVFTDNAR 130

Query: 69  -----GKLEEAERFFVSAIQEAKEGFGERDPHVASAFNNL 86
                GKLEEAERFFVSAIQEAKEGFGERDPHVASAFNNL
Sbjct: 131 DLFLQGKLEEAERFFVSAIQEAKEGFGERDPHVASAFNNL 170

[Close]

BLAST of Carg07428 vs. NCBI nr
Match: XP_022997758.1 (uncharacterized protein LOC111492620 [Cucurbita maxima])

HSP 1 Score: 135.6 bits (340), Expect = 1.5e-28
Identity = 76/100 (76.00%), Postives = 77/100 (77.00%), Query Frame = 0


Query: 9   AAIILGINSNPVLAKDAPSKPSSENGIEESDTIGLRKVEDGS------------------ 68
           AAIILGINSNPVLAKDAPSKPSSENGIEESDTIGLRKVEDGS                  
Sbjct: 71  AAIILGINSNPVLAKDAPSKPSSENGIEESDTIGLRKVEDGSVISNLHTSKWRVFTDNAR 130

Query: 69  -----GKLEEAERFFVSAIQEAKEGFGERDPHVASAFNNL 86
                GKLEEAER+FVSAIQEAKEGFGERDPHVASAFNNL
Sbjct: 131 DLFLQGKLEEAERYFVSAIQEAKEGFGERDPHVASAFNNL 170

[Close]

BLAST of Carg07428 vs. NCBI nr
Match: XP_023525053.1 (uncharacterized protein LOC111788782 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 135.6 bits (340), Expect = 1.5e-28
Identity = 76/100 (76.00%), Postives = 77/100 (77.00%), Query Frame = 0


Query: 9   AAIILGINSNPVLAKDAPSKPSSENGIEESDTIGLRKVEDGS------------------ 68
           AAIILGINSNPVLAKDAPSKPSSENGIEESDTIGLRKVEDGS                  
Sbjct: 71  AAIILGINSNPVLAKDAPSKPSSENGIEESDTIGLRKVEDGSVISNLHTSKWRVFTDNAR 130

Query: 69  -----GKLEEAERFFVSAIQEAKEGFGERDPHVASAFNNL 86
                GKLEEAER+FVSAIQEAKEGFGERDPHVASAFNNL
Sbjct: 131 DLFLQGKLEEAERYFVSAIQEAKEGFGERDPHVASAFNNL 170

[Close]

BLAST of Carg07428 vs. NCBI nr
Match: XP_022143433.1 (uncharacterized protein LOC111013309 isoform X2 [Momordica charantia])

HSP 1 Score: 122.1 bits (305), Expect = 1.7e-24
Identity = 69/100 (69.00%), Postives = 72/100 (72.00%), Query Frame = 0


Query: 9   AAIILGINSNPVLAKDAPSKPSSENGIEESDTIGLRKVEDGS------------------ 68
           AAIILGINSNPV AKD   KPSSENGIEE+DTIGLRKVEDGS                  
Sbjct: 71  AAIILGINSNPVFAKDTTFKPSSENGIEENDTIGLRKVEDGSVISNIHTSKWRVFTDTAR 130

Query: 69  -----GKLEEAERFFVSAIQEAKEGFGERDPHVASAFNNL 86
                G+LEEAER FVSA+QEAKEGFGERDPHVASAFNNL
Sbjct: 131 DLFLQGRLEEAERCFVSALQEAKEGFGERDPHVASAFNNL 170

[Close]

BLAST of Carg07428 vs. NCBI nr
Match: XP_022143432.1 (kinesin light chain 1 isoform X1 [Momordica charantia])

HSP 1 Score: 122.1 bits (305), Expect = 1.7e-24
Identity = 69/100 (69.00%), Postives = 72/100 (72.00%), Query Frame = 0


Query: 9   AAIILGINSNPVLAKDAPSKPSSENGIEESDTIGLRKVEDGS------------------ 68
           AAIILGINSNPV AKD   KPSSENGIEE+DTIGLRKVEDGS                  
Sbjct: 71  AAIILGINSNPVFAKDTTFKPSSENGIEENDTIGLRKVEDGSVISNIHTSKWRVFTDTAR 130

Query: 69  -----GKLEEAERFFVSAIQEAKEGFGERDPHVASAFNNL 86
                G+LEEAER FVSA+QEAKEGFGERDPHVASAFNNL
Sbjct: 131 DLFLQGRLEEAERCFVSALQEAKEGFGERDPHVASAFNNL 170

[Close]

BLAST of Carg07428 vs. TAIR10
Match: AT5G37590.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 84.3 bits (207), Expect = 7.3e-17
Identity = 53/105 (50.48%), Postives = 59/105 (56.19%), Query Frame = 0


Query: 4   ISLCGAAIILGINSNPVLAKDAPSKPSSENGIEESDTIGLRKVEDGS------------- 63
           I L G A ILG   N VLA+D   K  S + ++ES   GL K+EDGS             
Sbjct: 64  IILSGQAAILGFCGNTVLAEDESMKSKSGDNMDESGNTGLEKIEDGSVVSNIHTSKWRVF 123

Query: 64  ----------GKLEEAERFFVSAIQEAKEGFGERDPHVASAFNNL 86
                     GKLE AER F SAIQEAKEGFGE+DPHVASA NNL
Sbjct: 124 TDSGRDYFFQGKLEPAERLFGSAIQEAKEGFGEKDPHVASACNNL 168

[Close]

BLAST of Carg07428 vs. TrEMBL
Match: tr|A0A1S3C5G7|A0A1S3C5G7_CUCME (uncharacterized protein LOC103496867 OS=Cucumis melo OX=3656 GN=LOC103496867 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.3e-23
Identity = 64/100 (64.00%), Postives = 74/100 (74.00%), Query Frame = 0


Query: 9   AAIILGINSNPVLAKDAPSKPSSENGIEESDTIGLRKVEDGS------------------ 68
           AAIILGINSNPVLA++A  KPSSENGIE+ +T+GLRKVEDGS                  
Sbjct: 71  AAIILGINSNPVLAEEASFKPSSENGIEDGETVGLRKVEDGSVVSNLHTSKWRVFTDTAR 130

Query: 69  -----GKLEEAERFFVSAIQEAKEGFGERDPHVASAFNNL 86
                G+LE+AE++F+SAIQEAKEGFGERDPHVASAFNNL
Sbjct: 131 DLFLQGRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNL 170

[Close]

BLAST of Carg07428 vs. TrEMBL
Match: tr|A0A0A0LA19|A0A0A0LA19_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G187310 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.8e-23
Identity = 63/100 (63.00%), Postives = 74/100 (74.00%), Query Frame = 0


Query: 9   AAIILGINSNPVLAKDAPSKPSSENGIEESDTIGLRKVEDGS------------------ 68
           +AIILGINSNPVLA++A  KPSSENGIE+ +T+GLRKVEDGS                  
Sbjct: 71  SAIILGINSNPVLAEEASFKPSSENGIEDGETVGLRKVEDGSVVSNLHTSKWRVFTDTAR 130

Query: 69  -----GKLEEAERFFVSAIQEAKEGFGERDPHVASAFNNL 86
                G+LE+AE++F+SAIQEAKEGFGERDPHVASAFNNL
Sbjct: 131 DLFLQGRLEDAEKYFISAIQEAKEGFGERDPHVASAFNNL 170

[Close]

BLAST of Carg07428 vs. TrEMBL
Match: tr|A0A2I4EBI2|A0A2I4EBI2_9ROSI (uncharacterized protein LOC108988098 isoform X2 OS=Juglans regia OX=51240 GN=LOC108988098 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.2e-20
Identity = 63/106 (59.43%), Postives = 71/106 (66.98%), Query Frame = 0


Query: 4   ISLCG-AAIILGINSNPVLAKDAPSKPSSENGIEESDTIGLRKVEDGS------------ 63
           I +CG A I+LGIN+NPV AKD PS+ SSEN IE +  IGLRKVEDGS            
Sbjct: 64  ILICGHAGILLGINANPVFAKDMPSQSSSENDIEGAGIIGLRKVEDGSVISNIHTSKWRV 123

Query: 64  -----------GKLEEAERFFVSAIQEAKEGFGERDPHVASAFNNL 86
                      GKL+EAER+F SA+QEAKEGFGERDPHVASA NNL
Sbjct: 124 FTDNGRDLSLQGKLDEAERYFFSALQEAKEGFGERDPHVASACNNL 169

[Close]

BLAST of Carg07428 vs. TrEMBL
Match: tr|A0A2I4EBI7|A0A2I4EBI7_9ROSI (kinesin light chain 3 isoform X3 OS=Juglans regia OX=51240 GN=LOC108988098 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.2e-20
Identity = 63/106 (59.43%), Postives = 71/106 (66.98%), Query Frame = 0


Query: 4   ISLCG-AAIILGINSNPVLAKDAPSKPSSENGIEESDTIGLRKVEDGS------------ 63
           I +CG A I+LGIN+NPV AKD PS+ SSEN IE +  IGLRKVEDGS            
Sbjct: 64  ILICGHAGILLGINANPVFAKDMPSQSSSENDIEGAGIIGLRKVEDGSVISNIHTSKWRV 123

Query: 64  -----------GKLEEAERFFVSAIQEAKEGFGERDPHVASAFNNL 86
                      GKL+EAER+F SA+QEAKEGFGERDPHVASA NNL
Sbjct: 124 FTDNGRDLSLQGKLDEAERYFFSALQEAKEGFGERDPHVASACNNL 169

[Close]

BLAST of Carg07428 vs. TrEMBL
Match: tr|A0A2I4EBI9|A0A2I4EBI9_9ROSI (uncharacterized protein LOC108988098 isoform X1 OS=Juglans regia OX=51240 GN=LOC108988098 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.2e-20
Identity = 63/106 (59.43%), Postives = 71/106 (66.98%), Query Frame = 0


Query: 4   ISLCG-AAIILGINSNPVLAKDAPSKPSSENGIEESDTIGLRKVEDGS------------ 63
           I +CG A I+LGIN+NPV AKD PS+ SSEN IE +  IGLRKVEDGS            
Sbjct: 64  ILICGHAGILLGINANPVFAKDMPSQSSSENDIEGAGIIGLRKVEDGSVISNIHTSKWRV 123

Query: 64  -----------GKLEEAERFFVSAIQEAKEGFGERDPHVASAFNNL 86
                      GKL+EAER+F SA+QEAKEGFGERDPHVASA NNL
Sbjct: 124 FTDNGRDLSLQGKLDEAERYFFSALQEAKEGFGERDPHVASACNNL 169

The following BLAST results are available for this feature:

BLAST of Carg07428 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948435.1	6.8e-29	77.00	uncharacterized protein LOC111452120 [Cucurbita moschata]	[more]
XP_022997758.1	1.5e-28	76.00	uncharacterized protein LOC111492620 [Cucurbita maxima]	[more]
XP_023525053.1	1.5e-28	76.00	uncharacterized protein LOC111788782 [Cucurbita pepo subsp. pepo]	[more]
XP_022143433.1	1.7e-24	69.00	uncharacterized protein LOC111013309 isoform X2 [Momordica charantia]	[more]
XP_022143432.1	1.7e-24	69.00	kinesin light chain 1 isoform X1 [Momordica charantia]	[more]

BLAST of Carg07428 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G37590.1	7.3e-17	50.48	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of Carg07428 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg07428 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C5G7\|A0A1S3C5G7_CUCME	1.3e-23	64.00	uncharacterized protein LOC103496867 OS=Cucumis melo OX=3656 GN=LOC103496867 PE=...	[more]
tr\|A0A0A0LA19\|A0A0A0LA19_CUCSA	2.8e-23	63.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G187310 PE=4 SV=1	[more]
tr\|A0A2I4EBI2\|A0A2I4EBI2_9ROSI	2.2e-20	59.43	uncharacterized protein LOC108988098 isoform X2 OS=Juglans regia OX=51240 GN=LOC...	[more]
tr\|A0A2I4EBI7\|A0A2I4EBI7_9ROSI	2.2e-20	59.43	kinesin light chain 3 isoform X3 OS=Juglans regia OX=51240 GN=LOC108988098 PE=4 ...	[more]
tr\|A0A2I4EBI9\|A0A2I4EBI9_9ROSI	2.2e-20	59.43	uncharacterized protein LOC108988098 isoform X1 OS=Juglans regia OX=51240 GN=LOC...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07428-RA	Carg07428-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR19959	KINESIN LIGHT CHAIN	coord: 50..85
None	No IPR available	PANTHER	PTHR19959:SF159	TETRATRICOPEPTIDE REPEAT DOMAIN-CONTAINING PROTEIN	coord: 50..85

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg07428	Cla013138	Watermelon (97103) v1	carwmB0760
Carg07428	Csa3G187310	Cucumber (Chinese Long) v2	carcuB0781
Carg07428	ClCG05G010660	Watermelon (Charleston Gray)	carwcgB0739
Carg07428	CSPI03G17730	Wild cucumber (PI 183967)	carcpiB0799
Carg07428	Lsi05G002740	Bottle gourd (USVL1VR-Ls)	carlsiB700
Carg07428	Cp4.1LG02g16660	Cucurbita pepo (Zucchini)	carcpeB1072
Carg07428	CsGy3G017720	Cucumber (Gy14) v2	carcgybB0758

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg07428	Watermelon (97103) v2	carwmbB0795
Carg07428	Wax gourd	carwgoB0895
Carg07428	Silver-seed gourd	carcarB213
Carg07428	Cucumber (Gy14) v1	carcgyB0856
Carg07428	Cucurbita maxima (Rimu)	carcmaB1057
Carg07428	Cucurbita maxima (Rimu)	carcmaB1059
Carg07428	Cucurbita moschata (Rifu)	carcmoB1031
Carg07428	Cucurbita moschata (Rifu)	carcmoB1033
Carg07428	Cucurbita pepo (Zucchini)	carcpeB1073
Carg07428	Cucumber (Chinese Long) v3	carcucB0802
Carg07428	Melon (DHL92) v3.5.1	carmeB0756
Carg07428	Melon (DHL92) v3.6.1	carmedB0771