Lsi05G001180 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi05G001180
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description3'-5' exonuclease domain-containing protein
Locationchr05 : 1880736 .. 1883539 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATATAAAAACCCATCTTCACGATGAGCTAAGGCTATTGAAGTATGTCTCTACTATTTCCAGCTGTCCATTAAAAAAAACATAAATCCAAGATTTTAGCTACAACTCTTACAATTAGCCTTAGTTACATTAAACCATTAGACTAGATTTACTGATAAAGGAGTTGAAGGGAAGAGCAATCTTGGAAGTTACAGCTTACTATGCACAATTTGAACCAGTTTGATTCCCTTCAACTTCCTTCTTAGGTCAAGGCAGTATATGATAACTGGTTAGAATTTTCTACTATTTATTTCACTGCTTCCTAGATTTTGCAGATTTTTACTCCCCCACCCCCTCCCAAGTATAAATGATGGCAAAGTAAATAACTTGTTACTGTGTGTTGGATCTTCAACTATCCTATTGAGTATGAAATTTGTGATTCTTTATTCTAATTTCCAGGAGATGTTTTAAGGAATGTTTCTGCAGTTCCTTCCACTGAAATGAATATTGGGTTGAAAGTGATTCTGGAAAAGCAAGATGTGCATGAGAAGATATTAAGGACCAAAGTTTCTGAAGCCTCAAACATTATCAGAGCTACTGCATCTGATTTTTCACAGTGTATGGCTAATATAAGGGGAAATTGTTCTGCCTCATCGAGTATAAATTGTATGCATATCGATGAAGATCTTCAGAAAATTGTCAAGAGCTACGGTGAAAAAATTATTTTGAAAGAGTCAGACAAAAAACCCAGGACCTCCAAAAGAAAAGGCAAGAGATCATCGACTATGAAAGTGGTTTGCAGTGAAAAGCAAATCGTGTGTGTTGAAGATTGGCGAGGACCCCCACCATTGGATTTGTCCTTTGGGGGTGATGGATGCCCTAAATTTCTATGTGATGTTATGGTAAATATTTAGGTTTCCTCTTTTCTTCTTGAAGCTTGTAGCCTGTGGGTTTTATTTTCTTAAATGTTACGCAAGGTTGCAAGACAAGAAGAAACTAAAAAAATAGAGCTCTCATATTCTAGTCAAATTCTGAATCATCGAATGAAGCACTTCTAGTAAAAATTGTTAGTGCTCAATATCTTGCTTTAATGAGTGTTTGGTAGGAAAAGGTTTTAAGGGACAAGAACAAGCCTAATGGATGATAAATGTTTACTCCAGGTTGAAGGTCTTGCAAAACATCTACGTTGTGTTGGGATTGATGCTGCAGTTCCATTTTCCAAAAGGCCGGACTCTAGGTTCTAAATTATTAACAGTTTTAATGGCTTACATTTTGCAGATTTTTTCAGATTTAATTTGTTAGTTATCCATGGAGATATTTTCCATGCAGTCAATTGTAATGCTTTATCATATGTAGGGAATTAATTGATCAAGCGTGCAAGGAGAAGAGAGTACTCTTGACCAGGGATGCTAAACTGCTGAGACATGAGTATTTGTTATGTAATCAAATATACAGAGTTAAAAGTCTTCTAAAGAATGAACAGTTACTCGAGGTATTGATGCCAATTGCTTATAATTATGGCCATGGGCAATGGGAGTCAAAAGCATTTGTTCATTAATGGACCAACCTTGGTGGAGATCTTGGAAACAGTTTTGAGGAAGAGCTAAGCCTCTTGAACGTTCCTTAAATTCCTGGATTACCTTCTTTCAACAATAGTTCAAATTACCATATCACCATGCTTTTTTATATCAAGTGCAGGTTCCCTACATTTCAAATTTGGTGGCGATTTATAGGTTGAAATATTTTTGGAGATGAGAATGGAAAAGGAACTTTTAATGAGATCAAGGAAGCAATAAAAATTTCATTAGAACCTAGGGACTTGGGAGTATCTATGTCTTAGCAGTTGAAAGCCTACGACACTTATTGCAGCCTTTTGATTTCTATTCTAACTCTTTTTGGATTGATAATAGATATATTTTTCCCTTCTAGTGAATAGACACCCTTATATAGCTCTGAACTGTTAATTTAGCTTTGCACTGAAAACAAAATCAATTCTCCAGTTAGATTATTTTGCAGATATCGGAGGCCCATTCTAATTCCTCAATCATTTAAATCTGTTGTAGGTTATTGAAACTTTCAATTTGAAAATTAGTGAGGATCAGCTGATGTCTAGATGTACCAAATGCAATGGAAGGTTTATTCAAAAGTCCCTTACAACGGAGGAGGCTGTGCAGGCAGCGAAGGGTTTCCAAAAAATTCCTAACTGTTTGTTTGACAAGAATTTAGAGTTCTGGCAGTGCATGGACTGTCACCAACTATACTGGGAGGTAATCTTCTACAGTGTCGCCGTTCTGCAATGAGAATAACTTTTGAGTGGGGAGGTCTTCATGCACTAAAAAACTATTTGTAACATATTTTTTTTGAGGTTTAACAATTTTAGCTATGCAATTCCAGCGGACAAAATATTGAACTTTCCATAAAGGGACCGGTTGAGGTGAAGAAAAGAATACTAAGGGCAAAGAATGGGACTGCACTAAAAGTACCCAAACAAAACAATAAAGTATAAGACTGACTTGGCTTAGTTTTTTGACTTATTTAATGTCCCCAACTATTAATGTCTCACCGGATAAAGAGCGCACTTCGCATTCTTTAGTTGCACCCTACTCTTCTGTTACATTTAGAAGTGAGAAGGGTAATCGGAATTCACTTCAATATGTACTTGGAAAATTTACATTTTGAAGTTATTAACTTATTAGCATTCCTATCATTTATTGTGGCCTGTGTGTTCTGGTAAATCTAATGACGTCCTCCATATTTTTACAGGGGATACAATATCGCAATGCAATCCAGAAGTTCATTGATGTTTGCAAGTTGAATGACTAG

mRNA sequence

ATGTATATAAAAACCCATCTTCACGATGAGCTAAGGCTATTGAAGTCAAGGCAGTATATGATAACTGGAGATGTTTTAAGGAATGTTTCTGCAGTTCCTTCCACTGAAATGAATATTGGGTTGAAAGTGATTCTGGAAAAGCAAGATGTGCATGAGAAGATATTAAGGACCAAAGTTTCTGAAGCCTCAAACATTATCAGAGCTACTGCATCTGATTTTTCACAGTGTATGGCTAATATAAGGGGAAATTGTTCTGCCTCATCGAGTATAAATTGTATGCATATCGATGAAGATCTTCAGAAAATTGTCAAGAGCTACGGTGAAAAAATTATTTTGAAAGAGTCAGACAAAAAACCCAGGACCTCCAAAAGAAAAGGCAAGAGATCATCGACTATGAAAGTGGTTTGCAGTGAAAAGCAAATCGTGTGTGTTGAAGATTGGCGAGGACCCCCACCATTGGATTTGTCCTTTGGGGGTGATGGATGCCCTAAATTTCTATGTGATGTTATGGTTGAAGGTCTTGCAAAACATCTACGTTGTGTTGGGATTGATGCTGCAGTTCCATTTTCCAAAAGGCCGGACTCTAGGGAATTAATTGATCAAGCGTGCAAGGAGAAGAGAGTACTCTTGACCAGGGATGCTAAACTGCTGAGACATGAGTATTTGTTATGTAATCAAATATACAGAGTTAAAAGTCTTCTAAAGAATGAACAGTTACTCGAGGTTATTGAAACTTTCAATTTGAAAATTAGTGAGGATCAGCTGATGTCTAGATGTACCAAATGCAATGGAAGGTTTATTCAAAAGTCCCTTACAACGGAGGAGGCTGTGCAGGCAGCGAAGGGTTTCCAAAAAATTCCTAACTGTTTGTTTGACAAGAATTTAGAGTTCTGGCAGTGCATGGACTGTCACCAACTATACTGGGAGGGGATACAATATCGCAATGCAATCCAGAAGTTCATTGATGTTTGCAAGTTGAATGACTAG

Coding sequence (CDS)

ATGTATATAAAAACCCATCTTCACGATGAGCTAAGGCTATTGAAGTCAAGGCAGTATATGATAACTGGAGATGTTTTAAGGAATGTTTCTGCAGTTCCTTCCACTGAAATGAATATTGGGTTGAAAGTGATTCTGGAAAAGCAAGATGTGCATGAGAAGATATTAAGGACCAAAGTTTCTGAAGCCTCAAACATTATCAGAGCTACTGCATCTGATTTTTCACAGTGTATGGCTAATATAAGGGGAAATTGTTCTGCCTCATCGAGTATAAATTGTATGCATATCGATGAAGATCTTCAGAAAATTGTCAAGAGCTACGGTGAAAAAATTATTTTGAAAGAGTCAGACAAAAAACCCAGGACCTCCAAAAGAAAAGGCAAGAGATCATCGACTATGAAAGTGGTTTGCAGTGAAAAGCAAATCGTGTGTGTTGAAGATTGGCGAGGACCCCCACCATTGGATTTGTCCTTTGGGGGTGATGGATGCCCTAAATTTCTATGTGATGTTATGGTTGAAGGTCTTGCAAAACATCTACGTTGTGTTGGGATTGATGCTGCAGTTCCATTTTCCAAAAGGCCGGACTCTAGGGAATTAATTGATCAAGCGTGCAAGGAGAAGAGAGTACTCTTGACCAGGGATGCTAAACTGCTGAGACATGAGTATTTGTTATGTAATCAAATATACAGAGTTAAAAGTCTTCTAAAGAATGAACAGTTACTCGAGGTTATTGAAACTTTCAATTTGAAAATTAGTGAGGATCAGCTGATGTCTAGATGTACCAAATGCAATGGAAGGTTTATTCAAAAGTCCCTTACAACGGAGGAGGCTGTGCAGGCAGCGAAGGGTTTCCAAAAAATTCCTAACTGTTTGTTTGACAAGAATTTAGAGTTCTGGCAGTGCATGGACTGTCACCAACTATACTGGGAGGGGATACAATATCGCAATGCAATCCAGAAGTTCATTGATGTTTGCAAGTTGAATGACTAG

Protein sequence

MYIKTHLHDELRLLKSRQYMITGDVLRNVSAVPSTEMNIGLKVILEKQDVHEKILRTKVSEASNIIRATASDFSQCMANIRGNCSASSSINCMHIDEDLQKIVKSYGEKIILKESDKKPRTSKRKGKRSSTMKVVCSEKQIVCVEDWRGPPPLDLSFGGDGCPKFLCDVMVEGLAKHLRCVGIDAAVPFSKRPDSRELIDQACKEKRVLLTRDAKLLRHEYLLCNQIYRVKSLLKNEQLLEVIETFNLKISEDQLMSRCTKCNGRFIQKSLTTEEAVQAAKGFQKIPNCLFDKNLEFWQCMDCHQLYWEGIQYRNAIQKFIDVCKLND
Homology
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BLAST of Lsi05G001180 vs. TrEMBL
Match: A0A0A0L6Q0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G238160 PE=4 SV=1)

HSP 1 Score: 552.0 bits (1421), Expect = 5.0e-154
Identity = 276/306 (90.20%), Postives = 287/306 (93.79%), Query Frame = 1 

Query: 23  GDVLRNVSAVPSTEMNIGLKVILEKQDVHEKILRTKVSEASNIIRATASDFSQCMANIRG 82
           GDVLRNVSAVPSTEMN GL+VILEKQD+HEKILRTKVSEASNIIRATAS F Q MANIRG
Sbjct: 219 GDVLRNVSAVPSTEMNTGLRVILEKQDMHEKILRTKVSEASNIIRATASGFPQSMANIRG 278

Query: 83  NCSASSSINCMHIDEDLQKIVKSYGEKIILKESDKKPRTSKRKGKRSSTMKVVCSEKQIV 142
            CSASSSINCM +DEDLQK+VKSYGE+IILKESDKKP+TSKRK KRSSTMKV C EKQIV
Sbjct: 279 ICSASSSINCMPMDEDLQKVVKSYGERIILKESDKKPKTSKRKSKRSSTMKVGCIEKQIV 338

Query: 143 CVEDWRGPPPLDLSFGGDGCPKFLCDVMVEGLAKHLRCVGIDAAVPFSKRPDSRELIDQA 202
             EDW GPPP DLS GGDGCPKFLCDVMVEGLAKHLRCVG+DAAVPFSK P SRELIDQA
Sbjct: 339 SDEDWHGPPPWDLSLGGDGCPKFLCDVMVEGLAKHLRCVGVDAAVPFSKNPYSRELIDQA 398

Query: 203 CKEKRVLLTRDAKLLRHEYLLCNQIYRVKSLLKNEQLLEVIETFNLKISEDQLMSRCTKC 262
            KEKRVLLTRDAKLLRH YLL NQIYRVK+LLKNEQLLEVIETF+LKISEDQLMSRCTKC
Sbjct: 399 HKEKRVLLTRDAKLLRHGYLLRNQIYRVKNLLKNEQLLEVIETFDLKISEDQLMSRCTKC 458

Query: 263 NGRFIQKSLTTEEAVQAAKGFQKIPNCLFDKNLEFWQCMDCHQLYWEGIQYRNAIQKFID 322
           NGRFIQKSLTTEEAVQAAKGFQKIPNCLFD+NLEFWQCMDCHQLYWEGIQYRNA+QKFID
Sbjct: 459 NGRFIQKSLTTEEAVQAAKGFQKIPNCLFDQNLEFWQCMDCHQLYWEGIQYRNAVQKFID 518

Query: 323 VCKLND 329
           VCKLND
Sbjct: 519 VCKLND 524

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BLAST of Lsi05G001180 vs. TrEMBL
Match: A0A067F0L1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g009783mg PE=4 SV=1)

HSP 1 Score: 420.2 bits (1079), Expect = 2.3e-114
Identity = 210/306 (68.63%), Postives = 252/306 (82.35%), Query Frame = 1 

Query: 23  GDVLRNVSAVPSTEMNIGLKVILEKQDVHEKILRTKVSEASNIIRATASDFSQCMANIRG 82
           G+   ++S + S+ +++GLK ILEK D+  K +R K+ EA +IIRAT S +SQC+    G
Sbjct: 220 GNSCSSISELDSSNLDLGLKGILEKPDIGNKTVRFKLCEALDIIRAT-SYYSQCLP--EG 279

Query: 83  NCSASSSINCMHIDEDLQKIVKSYGEKIILKESDKKPRTSKRKGKRSSTMKVVCSEKQIV 142
             S  S +N M +DE L KIV+ YGEKI+L+E DK P+TSK+KG++ S++ V   EK++ 
Sbjct: 280 VVSRVSYLNTMPMDESLVKIVRKYGEKILLRECDKAPKTSKKKGRKRSSVIVDSREKRLD 339

Query: 143 CVEDWRGPPPLDLSFGGDGCPKFLCDVMVEGLAKHLRCVGIDAAVPFSKRPDSRELIDQA 202
            + DW+GPPP DLS GGDG PKFLCDVMVEGLAKHLRCVGIDAA P SK+P+ RELIDQ 
Sbjct: 340 DIGDWQGPPPWDLSLGGDGYPKFLCDVMVEGLAKHLRCVGIDAATPRSKKPEPRELIDQT 399

Query: 203 CKEKRVLLTRDAKLLRHEYLLCNQIYRVKSLLKNEQLLEVIETFNLKISEDQLMSRCTKC 262
            KEKRVLLTRDAKLLRH+YL+ NQIYRVKSLLKN+QLLEVIE F LKISEDQLMSRCTKC
Sbjct: 400 SKEKRVLLTRDAKLLRHQYLIKNQIYRVKSLLKNQQLLEVIEAFQLKISEDQLMSRCTKC 459

Query: 263 NGRFIQKSLTTEEAVQAAKGFQKIPNCLFDKNLEFWQCMDCHQLYWEGIQYRNAIQKFID 322
           NGRFIQK L+TEEAV+AAKGFQ+IP+CLFDKNL+FWQCMDC+QLYWEG QY NA+QKFID
Sbjct: 460 NGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLYWEGTQYHNAVQKFID 519

Query: 323 VCKLND 329
           VCKLN+
Sbjct: 520 VCKLNE 522

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BLAST of Lsi05G001180 vs. TrEMBL
Match: W9S1T5_9ROSA (Putative exonuclease mut-7-like protein OS=Morus notabilis GN=L484_011852 PE=4 SV=1)

HSP 1 Score: 419.5 bits (1077), Expect = 3.8e-114
Identity = 213/307 (69.38%), Postives = 250/307 (81.43%), Query Frame = 1 

Query: 23  GDVLRNVSAVPSTEMNIGLKVILEKQDVHEKILRTKVSEASNIIRATAS-DFSQCMANIR 82
           G++  N++   S   N+GLK ILEK  V EKI+RT   +A +I+RATA  D SQ +A+  
Sbjct: 222 GNLNHNLAEPTSLVSNVGLKEILEKNGVCEKIIRTTFCDALDIVRATACFDISQKIASEE 281

Query: 83  GNCSASSSINCMHIDEDLQKIVKSYGEKIILKESDKKPRTSKRKGKRSSTMKVVCSEKQI 142
           G    S   + + +DE L KIV  YGEK++LKESDKKP+ SKRKGKR S+  ++  EKQ+
Sbjct: 282 GMVLRSQQRSTLPMDESLLKIVNRYGEKLVLKESDKKPKISKRKGKRRSSAGLINKEKQL 341

Query: 143 VCVEDWRGPPPLDLSFGGDGCPKFLCDVMVEGLAKHLRCVGIDAAVPFSKRPDSRELIDQ 202
             +ED +GP P DLS GG+G PKFLCDVMVEGLAKHLRCVGIDAA+P SK+P+ RELI Q
Sbjct: 342 ENLEDGQGPIPWDLSLGGNGSPKFLCDVMVEGLAKHLRCVGIDAAIPHSKKPEPRELIGQ 401

Query: 203 ACKEKRVLLTRDAKLLRHEYLLCNQIYRVKSLLKNEQLLEVIETFNLKISEDQLMSRCTK 262
           A +E RVLLTRDAKLLRH+Y+L NQIYRVKSLLKNEQLLEVIETF LKISEDQLMSRCTK
Sbjct: 402 AHRENRVLLTRDAKLLRHQYILKNQIYRVKSLLKNEQLLEVIETFQLKISEDQLMSRCTK 461

Query: 263 CNGRFIQKSLTTEEAVQAAKGFQKIPNCLFDKNLEFWQCMDCHQLYWEGIQYRNAIQKFI 322
           CNGRFIQK LTTEEAV+AAKGFQ+IPNCLF++NLEFWQCMDC+QLYWEG QY+NA+QKFI
Sbjct: 462 CNGRFIQKPLTTEEAVEAAKGFQRIPNCLFNQNLEFWQCMDCNQLYWEGTQYKNAVQKFI 521

Query: 323 DVCKLND 329
           DVCKLND
Sbjct: 522 DVCKLND 528

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BLAST of Lsi05G001180 vs. TrEMBL
Match: A0A067K3P6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15506 PE=4 SV=1)

HSP 1 Score: 412.1 bits (1058), Expect = 6.1e-112
Identity = 210/317 (66.25%), Postives = 251/317 (79.18%), Query Frame = 1 

Query: 13  LLKSRQYMITGDVLRNVSAVPSTEMNIGLKVILEKQDVHEKILRTKVSEASNIIRATASD 72
           +LK R Y        NV  + S+ +N+GLK I  K D  + + RTK SEA  I++AT S 
Sbjct: 209 VLKERSY-------NNVMELHSSSLNLGLKEIFRKHDNGDILTRTKFSEALTILQATVSS 268

Query: 73  FSQC-MANIRGNCSASSSINCMHIDEDLQKIVKSYGEKIILKESDKKPRTSKRKGKRSST 132
              C +A   G  S +SS + M +DE +  IV+ YGEKI+LKESD+KP++SK+K K+ S+
Sbjct: 269 EDSCRIAKREGIISIASSRSTMPMDELILNIVRKYGEKILLKESDRKPKSSKKKEKKRSS 328

Query: 133 MKVVCSEKQIVCVEDWRGPPPLDLSFGGDGCPKFLCDVMVEGLAKHLRCVGIDAAVPFSK 192
           +  +  EKQ+  V DW+GPPP  LS GGDGCPKFLCDVMVEGLAKHLRCVGIDAA+P+SK
Sbjct: 329 V-AIGREKQLDNVGDWQGPPPWVLSLGGDGCPKFLCDVMVEGLAKHLRCVGIDAAIPYSK 388

Query: 193 RPDSRELIDQACKEKRVLLTRDAKLLRHEYLLCNQIYRVKSLLKNEQLLEVIETFNLKIS 252
           +P SRELIDQA KE+RVLLTRDAKLLR++YL  NQIYRVKSLLKN+QLLE+IE F L IS
Sbjct: 389 KPQSRELIDQAIKEQRVLLTRDAKLLRYQYLTSNQIYRVKSLLKNDQLLEIIEAFQLTIS 448

Query: 253 EDQLMSRCTKCNGRFIQKSLTTEEAVQAAKGFQKIPNCLFDKNLEFWQCMDCHQLYWEGI 312
           EDQLMSRCTKCNG FIQK LTTEEAV+AAKGFQKIP+CLF+KNLEFWQCMDC+QLYWEG 
Sbjct: 449 EDQLMSRCTKCNGIFIQKPLTTEEAVEAAKGFQKIPDCLFNKNLEFWQCMDCNQLYWEGT 508

Query: 313 QYRNAIQKFIDVCKLND 329
           QY+NA+QKFID+CKLND
Sbjct: 509 QYQNAVQKFIDICKLND 517

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BLAST of Lsi05G001180 vs. TrEMBL
Match: B9RPI0_RICCO (3-5 exonuclease, putative OS=Ricinus communis GN=RCOM_1377360 PE=4 SV=1)

HSP 1 Score: 411.8 bits (1057), Expect = 8.0e-112
Identity = 209/308 (67.86%), Postives = 254/308 (82.47%), Query Frame = 1 

Query: 23  GDVLRNVSAVPSTEM-NIGLKVILEKQDVHEKILRTKVSEASNIIRAT-ASDFSQCMANI 82
           G+   NV  + S+ + + GLK ILE+ D  + ++RT+ SEA NII+AT AS+ S  +A  
Sbjct: 217 GEFYNNVMELQSSNIISHGLKEILERFDAGDALIRTRFSEALNIIQATVASEDSHRIARG 276

Query: 83  RGNCSASSSINCMHIDEDLQKIVKSYGEKIILKESDKKPRTSKRKGKRSSTMKVVCSEKQ 142
               S +SSIN + +DE L  IV+ +GEKI+L ESD+KP+  ++KGK+ S++ V C EK 
Sbjct: 277 ERVVSITSSINTLPMDELLLNIVRRFGEKIVLGESDRKPKAFRKKGKKRSSI-VTCREKL 336

Query: 143 IVCVEDWRGPPPLDLSFGGDGCPKFLCDVMVEGLAKHLRCVGIDAAVPFSKRPDSRELID 202
           +  + DW+GPPP D S GGDGCPKFLCDVMVEGLAKHLRCVGIDAA+P+SK+P+SRELID
Sbjct: 337 LGNICDWQGPPPWDFSLGGDGCPKFLCDVMVEGLAKHLRCVGIDAAIPYSKKPESRELID 396

Query: 203 QACKEKRVLLTRDAKLLRHEYLLCNQIYRVKSLLKNEQLLEVIETFNLKISEDQLMSRCT 262
           QA KE RVLLTRDAKLLR +YL+ NQIYRVKSLLKNEQLLEVIETF L+ISEDQLMSRCT
Sbjct: 397 QARKEHRVLLTRDAKLLRFQYLIKNQIYRVKSLLKNEQLLEVIETFKLQISEDQLMSRCT 456

Query: 263 KCNGRFIQKSLTTEEAVQAAKGFQKIPNCLFDKNLEFWQCMDCHQLYWEGIQYRNAIQKF 322
           KCNGRFIQK L+TEEAV+AAKGFQKIP+CLF+KNLEFWQCMDC+QLYWEG QY+NA+QKF
Sbjct: 457 KCNGRFIQKPLSTEEAVEAAKGFQKIPDCLFNKNLEFWQCMDCNQLYWEGTQYQNAVQKF 516

Query: 323 IDVCKLND 329
           ID+CKLN+
Sbjct: 517 IDICKLNE 523

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BLAST of Lsi05G001180 vs. TAIR10
Match: AT5G24340.1 (AT5G24340.1 3'-5' exonuclease domain-containing protein)

HSP 1 Score: 381.3 bits (978), Expect = 5.9e-106
Identity = 193/329 (58.66%), Postives = 251/329 (76.29%), Query Frame = 1 

Query: 1   MYIKTHLHDELRLLKSRQ-YMITGDVLRNVSAVPSTEMNIGLKVILEKQDVHEKILRTKV 60
           +Y  T  H  L++    + +++ G  ++++  +     N+GL+ IL + D   KI+  K+
Sbjct: 185 LYAATDAHCLLQIFDVFEAHLVEGITVQDLRVI-----NVGLQEILTESDYSSKIVTVKL 244

Query: 61  SEASNIIRATASDFSQCMANIRGNCSASSSINCMHIDEDLQKIVKSYGEKIILKESDKKP 120
            +A+++IR+  S+  Q +AN  G     +++N M +DE+L KIV+ +GE+I+LKESD  P
Sbjct: 245 CKATDVIRSM-SENGQNIAN--GVVPRKTTLNTMPMDENLLKIVRKFGERILLKESDLLP 304

Query: 121 RTSKRKGKRSSTMKVVCSEKQIVCVEDWRGPPPLDLSFGGDGCPKFLCDVMVEGLAKHLR 180
           +  K+K +R      + + KQ+VC  DW+GPPP D S GGDGCPKFL DVMVEGLAKHLR
Sbjct: 305 KKLKKKTRRRVASSTMNTNKQLVCSADWQGPPPWDSSLGGDGCPKFLLDVMVEGLAKHLR 364

Query: 181 CVGIDAAVPFSKRPDSRELIDQACKEKRVLLTRDAKLLRHEYLLCNQIYRVKSLLKNEQL 240
           CVGIDAA+P SK+PDSREL+DQA KE RVLLTRD KLLRH+ L  +QIYRVKSLLKNEQL
Sbjct: 365 CVGIDAAIPHSKKPDSRELLDQAFKENRVLLTRDTKLLRHQDLAKHQIYRVKSLLKNEQL 424

Query: 241 LEVIETFNLKISEDQLMSRCTKCNGRFIQKSLTTEEAVQAAKGFQKIPNCLFDKNLEFWQ 300
           LEVIETF LKIS +QLMSRCTKCNG+FIQK L+ EEA++AAKGFQ+IPNCLF+KNLEFWQ
Sbjct: 425 LEVIETFQLKISGNQLMSRCTKCNGKFIQKPLSIEEAIEAAKGFQRIPNCLFNKNLEFWQ 484

Query: 301 CMDCHQLYWEGIQYRNAIQKFIDVCKLND 329
           CM+CHQLYWEG QY NA+QKF++VCKL++
Sbjct: 485 CMNCHQLYWEGTQYHNAVQKFMEVCKLSE 505

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BLAST of Lsi05G001180 vs. NCBI nr
Match: gi|659111952|ref|XP_008455993.1| (PREDICTED: exonuclease mut-7 homolog [Cucumis melo])

HSP 1 Score: 553.9 bits (1426), Expect = 1.9e-154
Identity = 275/306 (89.87%), Postives = 288/306 (94.12%), Query Frame = 1 

Query: 23  GDVLRNVSAVPSTEMNIGLKVILEKQDVHEKILRTKVSEASNIIRATASDFSQCMANIRG 82
           GD+LRNVSAVPSTEMN GLKVILEKQD+H+KILRTKVSEASNIIRATAS F Q MANIRG
Sbjct: 218 GDLLRNVSAVPSTEMNTGLKVILEKQDMHKKILRTKVSEASNIIRATASGFPQSMANIRG 277

Query: 83  NCSASSSINCMHIDEDLQKIVKSYGEKIILKESDKKPRTSKRKGKRSSTMKVVCSEKQIV 142
           NCS SSSINCM +DEDLQK+VKSYGE+I+LKESDKKP+ SKRKGKRSSTMKV CSEKQIV
Sbjct: 278 NCSVSSSINCMPMDEDLQKVVKSYGERIVLKESDKKPKISKRKGKRSSTMKVGCSEKQIV 337

Query: 143 CVEDWRGPPPLDLSFGGDGCPKFLCDVMVEGLAKHLRCVGIDAAVPFSKRPDSRELIDQA 202
             EDW GPPP DLS GGDGCPKFLCDVMVEGLAKHLRCVG+DAAVPFSK P SRELID+A
Sbjct: 338 SDEDWLGPPPWDLSLGGDGCPKFLCDVMVEGLAKHLRCVGVDAAVPFSKNPYSRELIDKA 397

Query: 203 CKEKRVLLTRDAKLLRHEYLLCNQIYRVKSLLKNEQLLEVIETFNLKISEDQLMSRCTKC 262
            KEKRVLLTRDAKLLRH YLL NQIYRVK+LLKNEQLLEVIETFNLKISEDQLMSRCTKC
Sbjct: 398 HKEKRVLLTRDAKLLRHGYLLRNQIYRVKNLLKNEQLLEVIETFNLKISEDQLMSRCTKC 457

Query: 263 NGRFIQKSLTTEEAVQAAKGFQKIPNCLFDKNLEFWQCMDCHQLYWEGIQYRNAIQKFID 322
           NGRFIQKSLTTEEAVQAAKGFQKIPNCLFD+NLEFWQCMDCHQLYWEGIQYRNA+QKFID
Sbjct: 458 NGRFIQKSLTTEEAVQAAKGFQKIPNCLFDQNLEFWQCMDCHQLYWEGIQYRNAVQKFID 517

Query: 323 VCKLND 329
           VCKLND
Sbjct: 518 VCKLND 523

[Close]
BLAST of Lsi05G001180 vs. NCBI nr
Match: gi|449456993|ref|XP_004146233.1| (PREDICTED: exonuclease mut-7 homolog [Cucumis sativus])

HSP 1 Score: 552.0 bits (1421), Expect = 7.1e-154
Identity = 276/306 (90.20%), Postives = 287/306 (93.79%), Query Frame = 1 

Query: 23  GDVLRNVSAVPSTEMNIGLKVILEKQDVHEKILRTKVSEASNIIRATASDFSQCMANIRG 82
           GDVLRNVSAVPSTEMN GL+VILEKQD+HEKILRTKVSEASNIIRATAS F Q MANIRG
Sbjct: 219 GDVLRNVSAVPSTEMNTGLRVILEKQDMHEKILRTKVSEASNIIRATASGFPQSMANIRG 278

Query: 83  NCSASSSINCMHIDEDLQKIVKSYGEKIILKESDKKPRTSKRKGKRSSTMKVVCSEKQIV 142
            CSASSSINCM +DEDLQK+VKSYGE+IILKESDKKP+TSKRK KRSSTMKV C EKQIV
Sbjct: 279 ICSASSSINCMPMDEDLQKVVKSYGERIILKESDKKPKTSKRKSKRSSTMKVGCIEKQIV 338

Query: 143 CVEDWRGPPPLDLSFGGDGCPKFLCDVMVEGLAKHLRCVGIDAAVPFSKRPDSRELIDQA 202
             EDW GPPP DLS GGDGCPKFLCDVMVEGLAKHLRCVG+DAAVPFSK P SRELIDQA
Sbjct: 339 SDEDWHGPPPWDLSLGGDGCPKFLCDVMVEGLAKHLRCVGVDAAVPFSKNPYSRELIDQA 398

Query: 203 CKEKRVLLTRDAKLLRHEYLLCNQIYRVKSLLKNEQLLEVIETFNLKISEDQLMSRCTKC 262
            KEKRVLLTRDAKLLRH YLL NQIYRVK+LLKNEQLLEVIETF+LKISEDQLMSRCTKC
Sbjct: 399 HKEKRVLLTRDAKLLRHGYLLRNQIYRVKNLLKNEQLLEVIETFDLKISEDQLMSRCTKC 458

Query: 263 NGRFIQKSLTTEEAVQAAKGFQKIPNCLFDKNLEFWQCMDCHQLYWEGIQYRNAIQKFID 322
           NGRFIQKSLTTEEAVQAAKGFQKIPNCLFD+NLEFWQCMDCHQLYWEGIQYRNA+QKFID
Sbjct: 459 NGRFIQKSLTTEEAVQAAKGFQKIPNCLFDQNLEFWQCMDCHQLYWEGIQYRNAVQKFID 518

Query: 323 VCKLND 329
           VCKLND
Sbjct: 519 VCKLND 524

[Close]
BLAST of Lsi05G001180 vs. NCBI nr
Match: gi|1009138500|ref|XP_015886621.1| (PREDICTED: uncharacterized protein LOC107421806 [Ziziphus jujuba])

HSP 1 Score: 423.3 bits (1087), Expect = 3.8e-115
Identity = 211/307 (68.73%), Postives = 252/307 (82.08%), Query Frame = 1 

Query: 23  GDVLRNVSAVPSTEMNIGLKVILEKQDVHEKILRTKVSEASNIIRATAS-DFSQCMANIR 82
           G++   +S    + +NIGLK ILEK D  +KI R K SEA +I+RATAS D  Q +A + 
Sbjct: 226 GNLNHELSETHPSNVNIGLKEILEKDDGCDKISRLKFSEALHIVRATASSDVFQKIATVD 285

Query: 83  GNCSASSSINCMHIDEDLQKIVKSYGEKIILKESDKKPRTSKRKGKRSSTMKVVCSEKQI 142
           G    S   + + +DE L KIVK YGEKI+LKESDKKP+ +KRKGK+ S++ ++C EK+ 
Sbjct: 286 GLVLKSRQRSTLPMDESLLKIVKKYGEKILLKESDKKPKITKRKGKKRSSVGLICKEKRP 345

Query: 143 VCVEDWRGPPPLDLSFGGDGCPKFLCDVMVEGLAKHLRCVGIDAAVPFSKRPDSRELIDQ 202
              ++ +GPPP DL+ GG+GCPKFLCDVMVEGLAKHLRCVGIDAA+P SK+PDSRELID 
Sbjct: 346 EACDERQGPPPWDLTLGGNGCPKFLCDVMVEGLAKHLRCVGIDAAIPHSKKPDSRELIDH 405

Query: 203 ACKEKRVLLTRDAKLLRHEYLLCNQIYRVKSLLKNEQLLEVIETFNLKISEDQLMSRCTK 262
           A +E RVLLTRDAKLLRHEY++ NQIYRVKSLLKNEQLLEVIETF L ISEDQLMSRCTK
Sbjct: 406 AKRENRVLLTRDAKLLRHEYIIKNQIYRVKSLLKNEQLLEVIETFQLTISEDQLMSRCTK 465

Query: 263 CNGRFIQKSLTTEEAVQAAKGFQKIPNCLFDKNLEFWQCMDCHQLYWEGIQYRNAIQKFI 322
           CNGRFIQK L+TEEA++AAKGFQ+IP+CLFDKNLEFWQCMDC+QLYWEG QY NA+QKFI
Sbjct: 466 CNGRFIQKPLSTEEAIEAAKGFQRIPSCLFDKNLEFWQCMDCNQLYWEGTQYHNAVQKFI 525

Query: 323 DVCKLND 329
           +VCKLN+
Sbjct: 526 NVCKLNE 532

[Close]
BLAST of Lsi05G001180 vs. NCBI nr
Match: gi|641840722|gb|KDO59640.1| (hypothetical protein CISIN_1g009783mg [Citrus sinensis])

HSP 1 Score: 420.2 bits (1079), Expect = 3.2e-114
Identity = 210/306 (68.63%), Postives = 252/306 (82.35%), Query Frame = 1 

Query: 23  GDVLRNVSAVPSTEMNIGLKVILEKQDVHEKILRTKVSEASNIIRATASDFSQCMANIRG 82
           G+   ++S + S+ +++GLK ILEK D+  K +R K+ EA +IIRAT S +SQC+    G
Sbjct: 220 GNSCSSISELDSSNLDLGLKGILEKPDIGNKTVRFKLCEALDIIRAT-SYYSQCLP--EG 279

Query: 83  NCSASSSINCMHIDEDLQKIVKSYGEKIILKESDKKPRTSKRKGKRSSTMKVVCSEKQIV 142
             S  S +N M +DE L KIV+ YGEKI+L+E DK P+TSK+KG++ S++ V   EK++ 
Sbjct: 280 VVSRVSYLNTMPMDESLVKIVRKYGEKILLRECDKAPKTSKKKGRKRSSVIVDSREKRLD 339

Query: 143 CVEDWRGPPPLDLSFGGDGCPKFLCDVMVEGLAKHLRCVGIDAAVPFSKRPDSRELIDQA 202
            + DW+GPPP DLS GGDG PKFLCDVMVEGLAKHLRCVGIDAA P SK+P+ RELIDQ 
Sbjct: 340 DIGDWQGPPPWDLSLGGDGYPKFLCDVMVEGLAKHLRCVGIDAATPRSKKPEPRELIDQT 399

Query: 203 CKEKRVLLTRDAKLLRHEYLLCNQIYRVKSLLKNEQLLEVIETFNLKISEDQLMSRCTKC 262
            KEKRVLLTRDAKLLRH+YL+ NQIYRVKSLLKN+QLLEVIE F LKISEDQLMSRCTKC
Sbjct: 400 SKEKRVLLTRDAKLLRHQYLIKNQIYRVKSLLKNQQLLEVIEAFQLKISEDQLMSRCTKC 459

Query: 263 NGRFIQKSLTTEEAVQAAKGFQKIPNCLFDKNLEFWQCMDCHQLYWEGIQYRNAIQKFID 322
           NGRFIQK L+TEEAV+AAKGFQ+IP+CLFDKNL+FWQCMDC+QLYWEG QY NA+QKFID
Sbjct: 460 NGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLYWEGTQYHNAVQKFID 519

Query: 323 VCKLND 329
           VCKLN+
Sbjct: 520 VCKLNE 522

[Close]
BLAST of Lsi05G001180 vs. NCBI nr
Match: gi|703147990|ref|XP_010109230.1| (putative exonuclease mut-7-like protein [Morus notabilis])

HSP 1 Score: 419.5 bits (1077), Expect = 5.5e-114
Identity = 213/307 (69.38%), Postives = 250/307 (81.43%), Query Frame = 1 

Query: 23  GDVLRNVSAVPSTEMNIGLKVILEKQDVHEKILRTKVSEASNIIRATAS-DFSQCMANIR 82
           G++  N++   S   N+GLK ILEK  V EKI+RT   +A +I+RATA  D SQ +A+  
Sbjct: 222 GNLNHNLAEPTSLVSNVGLKEILEKNGVCEKIIRTTFCDALDIVRATACFDISQKIASEE 281

Query: 83  GNCSASSSINCMHIDEDLQKIVKSYGEKIILKESDKKPRTSKRKGKRSSTMKVVCSEKQI 142
           G    S   + + +DE L KIV  YGEK++LKESDKKP+ SKRKGKR S+  ++  EKQ+
Sbjct: 282 GMVLRSQQRSTLPMDESLLKIVNRYGEKLVLKESDKKPKISKRKGKRRSSAGLINKEKQL 341

Query: 143 VCVEDWRGPPPLDLSFGGDGCPKFLCDVMVEGLAKHLRCVGIDAAVPFSKRPDSRELIDQ 202
             +ED +GP P DLS GG+G PKFLCDVMVEGLAKHLRCVGIDAA+P SK+P+ RELI Q
Sbjct: 342 ENLEDGQGPIPWDLSLGGNGSPKFLCDVMVEGLAKHLRCVGIDAAIPHSKKPEPRELIGQ 401

Query: 203 ACKEKRVLLTRDAKLLRHEYLLCNQIYRVKSLLKNEQLLEVIETFNLKISEDQLMSRCTK 262
           A +E RVLLTRDAKLLRH+Y+L NQIYRVKSLLKNEQLLEVIETF LKISEDQLMSRCTK
Sbjct: 402 AHRENRVLLTRDAKLLRHQYILKNQIYRVKSLLKNEQLLEVIETFQLKISEDQLMSRCTK 461

Query: 263 CNGRFIQKSLTTEEAVQAAKGFQKIPNCLFDKNLEFWQCMDCHQLYWEGIQYRNAIQKFI 322
           CNGRFIQK LTTEEAV+AAKGFQ+IPNCLF++NLEFWQCMDC+QLYWEG QY+NA+QKFI
Sbjct: 462 CNGRFIQKPLTTEEAVEAAKGFQRIPNCLFNQNLEFWQCMDCNQLYWEGTQYKNAVQKFI 521

Query: 323 DVCKLND 329
           DVCKLND
Sbjct: 522 DVCKLND 528

The following BLAST results are available for this feature:
BLAST of Lsi05G001180 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi05G001180 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L6Q0_CUCSA5.0e-15490.20Uncharacterized protein OS=Cucumis sativus GN=Csa_3G238160 PE=4 SV=1[more]
A0A067F0L1_CITSI2.3e-11468.63Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g009783mg PE=4 SV=1[more]
W9S1T5_9ROSA3.8e-11469.38Putative exonuclease mut-7-like protein OS=Morus notabilis GN=L484_011852 PE=4 S... [more]
A0A067K3P6_JATCU6.1e-11266.25Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15506 PE=4 SV=1[more]
B9RPI0_RICCO8.0e-11267.863-5 exonuclease, putative OS=Ricinus communis GN=RCOM_1377360 PE=4 SV=1[more]
BLAST of Lsi05G001180 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G24340.15.9e-10658.66 3'-5' exonuclease domain-containing protein[more]
BLAST of Lsi05G001180 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659111952|ref|XP_008455993.1|1.9e-15489.87PREDICTED: exonuclease mut-7 homolog [Cucumis melo][more]
gi|449456993|ref|XP_004146233.1|7.1e-15490.20PREDICTED: exonuclease mut-7 homolog [Cucumis sativus][more]
gi|1009138500|ref|XP_015886621.1|3.8e-11568.73PREDICTED: uncharacterized protein LOC107421806 [Ziziphus jujuba][more]
gi|641840722|gb|KDO59640.1|3.2e-11468.63hypothetical protein CISIN_1g009783mg [Citrus sinensis][more]
gi|703147990|ref|XP_010109230.1|5.5e-11469.38putative exonuclease mut-7-like protein [Morus notabilis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002782Mut7-C_RNAse_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0008408 3'-5' exonuclease activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G001180.1Lsi05G001180.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002782Mut7-C RNAse domainPFAMPF01927Mut7-Ccoord: 163..319
score: 1.4
NoneNo IPR availablePANTHERPTHR12124POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATEDcoord: 44..328
score: 1.2E
NoneNo IPR availablePANTHERPTHR12124:SF383'-5' EXONUCLEASE DOMAIN-CONTAINING PROTEINcoord: 44..328
score: 1.2E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi05G001180Cla004273Watermelon (97103) v1lsiwmB361
Lsi05G001180Cla97C05G091420Watermelon (97103) v2lsiwmbB329
Lsi05G001180Carg15053Silver-seed gourdcarlsiB904
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi05G001180Bottle gourd (USVL1VR-Ls)lsilsiB013
Lsi05G001180Bottle gourd (USVL1VR-Ls)lsilsiB158
Lsi05G001180Cucumber (Gy14) v1cgylsiB003
Lsi05G001180Cucumber (Gy14) v1cgylsiB348
Lsi05G001180Cucurbita maxima (Rimu)cmalsiB289
Lsi05G001180Cucurbita maxima (Rimu)cmalsiB318
Lsi05G001180Cucurbita maxima (Rimu)cmalsiB385
Lsi05G001180Cucurbita maxima (Rimu)cmalsiB584
Lsi05G001180Cucurbita moschata (Rifu)cmolsiB278
Lsi05G001180Cucurbita moschata (Rifu)cmolsiB307
Lsi05G001180Cucurbita moschata (Rifu)cmolsiB370
Lsi05G001180Cucurbita moschata (Rifu)cmolsiB559
Lsi05G001180Cucurbita pepo (Zucchini)cpelsiB037
Lsi05G001180Cucurbita pepo (Zucchini)cpelsiB154
Lsi05G001180Cucurbita pepo (Zucchini)cpelsiB178
Lsi05G001180Cucurbita pepo (Zucchini)cpelsiB622
Lsi05G001180Wild cucumber (PI 183967)cpilsiB209
Lsi05G001180Wild cucumber (PI 183967)cpilsiB381
Lsi05G001180Cucumber (Chinese Long) v2culsiB211
Lsi05G001180Cucumber (Chinese Long) v2culsiB379
Lsi05G001180Melon (DHL92) v3.5.1lsimeB337
Lsi05G001180Melon (DHL92) v3.5.1lsimeB368
Lsi05G001180Watermelon (Charleston Gray)lsiwcgB324
Lsi05G001180Watermelon (Charleston Gray)lsiwcgB332
Lsi05G001180Watermelon (97103) v1lsiwmB376
Lsi05G001180Cucumber (Gy14) v2cgyblsiB198
Lsi05G001180Cucumber (Gy14) v2cgyblsiB343
Lsi05G001180Melon (DHL92) v3.6.1lsimedB352
Lsi05G001180Melon (DHL92) v3.6.1lsimedB384
Lsi05G001180Silver-seed gourdcarlsiB460
Lsi05G001180Silver-seed gourdcarlsiB490
Lsi05G001180Cucumber (Chinese Long) v3cuclsiB230
Lsi05G001180Cucumber (Chinese Long) v3cuclsiB401
Lsi05G001180Watermelon (97103) v2lsiwmbB318
Lsi05G001180Watermelon (97103) v2lsiwmbB339
Lsi05G001180Wax gourdlsiwgoB418
Lsi05G001180Wax gourdlsiwgoB431
Lsi05G001180Wax gourdlsiwgoB442