Lsi05G001070 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi05G001070
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr05 : 1816879 .. 1817999 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGTTGCTTTGAAATCAATCAAAGAGGGTGGCCATCGGACCCATTTCAAATCCCGCATTGCCTAGTTCGGATTCCGAGGGCCGATCTTCAACTTTAGGATTATAAAATGCTCGTGGTAATTGGGATTCTTGGGGGGGTTTCATATTAAATTTTAGTTCTCATTATATCGATTTGTGTGCTATTTCTTATGCTGATTTCTGCTTTACAGGTCGAACCCAAGGAAGAAATTCAAGCAGTCAATTTCCTCTGGACCCACCGAGGGCTTCTTGACTGAGTTGCTCCATCATTTTGTCTATGAACTGAAAGTGATACAATTCATTGCTTCTCTATAATACTATGCATAAGAAGATGCTCCAAGCTGCTTGTACTTTGGCTCAATCTCTGAAAGGTATTTGATATCATTTTTTTTCTTTTACTGAAGAAAGAGGAGTTGTTTTTACGGTTTTTAGCTATGAATTAGGAAATGGGTTTTGGTGGTTACTTTGATTTGGGTTATTATTGTTTCTCCTTTGTTGATTGTGTTTACTGCTGCTACTGTGCATTGCTAGCAACCCTTTTGTTTTTCTGTTTCAAAAGGTAAGAAGTAAAAGACATAATCATCTTGTGAGAACTGAAAGTAACTTGCAGATGCAGCCTTTTGGAATAGTTCTCATTATGCCTTGAAAAGGAACAATATATGGTGCAGTTCTATCCTGGCAGACCACTGTGGAAAAGAATAGTATTATAGAGGACTTTTTTTATGCATAAAAGTTGCCTTTTCTCTCTTCAGTTTACATTTAGTAGTCACTAATAGCCAGAAAACCTTGTGTTTGCTTTATCAGCGAGTCCTGACCTGTGATAAAGAAAATTGGAGGAGATTGGGTTGGGGGAGATGGAAAAGAGGAAAAGCAAGTGGGGTTGATTGCAGTCTGTCTTTTCCCTGAAAACCAGGGACAATTCTCTTTTATTCTTTTTCTTTTTTTCCTTTTTATGACTTGTATTTTGTTGTAGTTTGGCTTCTACATGCTCTTCAGACTCAGGCACATGTAAAAGCAACCCTGCTTTTGGCATTTCATGGTTTGGTTGATAACCTTATAGCCTTGATCCATCTTGCATATTACAATTTTATGATTTTGTGA

mRNA sequence

ATGAGGTCGAACCCAAGGAAGAAATTCAAGCAGTCAATTTCCTCTGGACCCACCGAGGGCTTCTTGACTGAGTTGCTCCATCATTTTGTCTATGAACTGAAAGAAATGGGTTTTGGTGGTTACTTTGATTTGGGTTATTATTGTTTCTCCTTTGTTGATTGTGTTTACTGCTGCTACTGTGCATTGCTAGCAACCCTTTTGTTTTTCTGTTTCAAAAGTTTACATTTAGTAGTCACTAATAGCCAGAAAACCTTGTGTTTGCTTTATCAGCGAGTCCTGACCTGTGATAAAGAAAATTGGAGGAGATTGGGTTGGGGGAGATGGAAAAGAGGAAAAGCAATTTGGCTTCTACATGCTCTTCAGACTCAGGCACATGTAAAAGCAACCCTGCTTTTGGCATTTCATGGTTTGGTTGATAACCTTATAGCCTTGATCCATCTTGCATATTACAATTTTATGATTTTGTGA

Coding sequence (CDS)

ATGAGGTCGAACCCAAGGAAGAAATTCAAGCAGTCAATTTCCTCTGGACCCACCGAGGGCTTCTTGACTGAGTTGCTCCATCATTTTGTCTATGAACTGAAAGAAATGGGTTTTGGTGGTTACTTTGATTTGGGTTATTATTGTTTCTCCTTTGTTGATTGTGTTTACTGCTGCTACTGTGCATTGCTAGCAACCCTTTTGTTTTTCTGTTTCAAAAGTTTACATTTAGTAGTCACTAATAGCCAGAAAACCTTGTGTTTGCTTTATCAGCGAGTCCTGACCTGTGATAAAGAAAATTGGAGGAGATTGGGTTGGGGGAGATGGAAAAGAGGAAAAGCAATTTGGCTTCTACATGCTCTTCAGACTCAGGCACATGTAAAAGCAACCCTGCTTTTGGCATTTCATGGTTTGGTTGATAACCTTATAGCCTTGATCCATCTTGCATATTACAATTTTATGATTTTGTGA

Protein sequence

MRSNPRKKFKQSISSGPTEGFLTELLHHFVYELKEMGFGGYFDLGYYCFSFVDCVYCCYCALLATLLFFCFKSLHLVVTNSQKTLCLLYQRVLTCDKENWRRLGWGRWKRGKAIWLLHALQTQAHVKATLLLAFHGLVDNLIALIHLAYYNFMIL
Homology
[Close]
BLAST of Lsi05G001070 vs. TrEMBL
Match: A0A0A0L7A5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G239270 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 8.4e-19
Identity = 74/163 (45.40%), Postives = 88/163 (53.99%), Query Frame = 1 

Query: 6   RKKFKQSISSGPTEGFLTELLHHFVYELKEMGFGGYFD-------------LGYYCFSFV 65
           +KK KQSISSGPT+GFLTELLH+FVYELK + F   ++             +G +   FV
Sbjct: 64  KKKLKQSISSGPTKGFLTELLHYFVYELKMIQFIALYEQEDAPTSQRKWVLVGIFDLGFV 123

Query: 66  DCVYCCYCALLATLLFFCFKSLHLVVTNSQKTLCLLYQRVLTCDKENWRRLGWGRWKRGK 125
             VYCC+CALLATLLF                         +  KE     G G   +G+
Sbjct: 124 -IVYCCHCALLATLLF-------------------------SASKEKIGGDGVGGDGKGE 183

Query: 126 AIWLLHALQTQAHVKATLLLAFHGLVDNLIALIHLAYYNFMIL 156
                   QTQAHVKA ++L FHGLVD LIA IHLAYYN  IL
Sbjct: 184 R-------QTQAHVKAAMVLEFHGLVDKLIAFIHLAYYNSTIL 193

[Close]
BLAST of Lsi05G001070 vs. NCBI nr
Match: gi|700202530|gb|KGN57663.1| (hypothetical protein Csa_3G239270 [Cucumis sativus])

HSP 1 Score: 101.7 bits (252), Expect = 1.2e-18
Identity = 74/163 (45.40%), Postives = 88/163 (53.99%), Query Frame = 1 

Query: 6   RKKFKQSISSGPTEGFLTELLHHFVYELKEMGFGGYFD-------------LGYYCFSFV 65
           +KK KQSISSGPT+GFLTELLH+FVYELK + F   ++             +G +   FV
Sbjct: 64  KKKLKQSISSGPTKGFLTELLHYFVYELKMIQFIALYEQEDAPTSQRKWVLVGIFDLGFV 123

Query: 66  DCVYCCYCALLATLLFFCFKSLHLVVTNSQKTLCLLYQRVLTCDKENWRRLGWGRWKRGK 125
             VYCC+CALLATLLF                         +  KE     G G   +G+
Sbjct: 124 -IVYCCHCALLATLLF-------------------------SASKEKIGGDGVGGDGKGE 183

Query: 126 AIWLLHALQTQAHVKATLLLAFHGLVDNLIALIHLAYYNFMIL 156
                   QTQAHVKA ++L FHGLVD LIA IHLAYYN  IL
Sbjct: 184 R-------QTQAHVKAAMVLEFHGLVDKLIAFIHLAYYNSTIL 193

The following BLAST results are available for this feature:
BLAST of Lsi05G001070 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi05G001070 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7A5_CUCSA8.4e-1945.40Uncharacterized protein OS=Cucumis sativus GN=Csa_3G239270 PE=4 SV=1[more]
BLAST of Lsi05G001070 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi05G001070 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202530|gb|KGN57663.1|1.2e-1845.40hypothetical protein Csa_3G239270 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G001070.1Lsi05G001070.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi05G001070Csa3G239270Cucumber (Chinese Long) v2culsiB211
Lsi05G001070CSPI03G19760Wild cucumber (PI 183967)cpilsiB209
Lsi05G001070Cla97C05G091280Watermelon (97103) v2lsiwmbB329
Lsi05G001070CsaV3_3G019810Cucumber (Chinese Long) v3cuclsiB230
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi05G001070Cucurbita pepo (Zucchini)cpelsiB036
Lsi05G001070Cucurbita pepo (Zucchini)cpelsiB037
Lsi05G001070Cucurbita pepo (Zucchini)cpelsiB154
Lsi05G001070Cucurbita pepo (Zucchini)cpelsiB178
Lsi05G001070Cucurbita pepo (Zucchini)cpelsiB622
Lsi05G001070Wild cucumber (PI 183967)cpilsiB381
Lsi05G001070Cucumber (Chinese Long) v2culsiB379
Lsi05G001070Melon (DHL92) v3.5.1lsimeB337
Lsi05G001070Melon (DHL92) v3.5.1lsimeB368
Lsi05G001070Watermelon (Charleston Gray)lsiwcgB324
Lsi05G001070Watermelon (Charleston Gray)lsiwcgB332
Lsi05G001070Watermelon (Charleston Gray)lsiwcgB342
Lsi05G001070Watermelon (97103) v1lsiwmB361
Lsi05G001070Watermelon (97103) v1lsiwmB372
Lsi05G001070Watermelon (97103) v1lsiwmB376
Lsi05G001070Cucumber (Gy14) v2cgyblsiB198
Lsi05G001070Cucumber (Gy14) v2cgyblsiB343
Lsi05G001070Melon (DHL92) v3.6.1lsimedB352
Lsi05G001070Melon (DHL92) v3.6.1lsimedB384
Lsi05G001070Silver-seed gourdcarlsiB460
Lsi05G001070Silver-seed gourdcarlsiB488
Lsi05G001070Silver-seed gourdcarlsiB490
Lsi05G001070Silver-seed gourdcarlsiB904
Lsi05G001070Cucumber (Chinese Long) v3cuclsiB401
Lsi05G001070Watermelon (97103) v2lsiwmbB318
Lsi05G001070Watermelon (97103) v2lsiwmbB339
Lsi05G001070Wax gourdlsiwgoB418
Lsi05G001070Wax gourdlsiwgoB431
Lsi05G001070Wax gourdlsiwgoB442
Lsi05G001070Bottle gourd (USVL1VR-Ls)lsilsiB013
Lsi05G001070Bottle gourd (USVL1VR-Ls)lsilsiB158
Lsi05G001070Cucumber (Gy14) v1cgylsiB003
Lsi05G001070Cucumber (Gy14) v1cgylsiB348
Lsi05G001070Cucurbita maxima (Rimu)cmalsiB289
Lsi05G001070Cucurbita maxima (Rimu)cmalsiB318
Lsi05G001070Cucurbita maxima (Rimu)cmalsiB385
Lsi05G001070Cucurbita maxima (Rimu)cmalsiB388
Lsi05G001070Cucurbita maxima (Rimu)cmalsiB584
Lsi05G001070Cucurbita moschata (Rifu)cmolsiB278
Lsi05G001070Cucurbita moschata (Rifu)cmolsiB307
Lsi05G001070Cucurbita moschata (Rifu)cmolsiB373
Lsi05G001070Cucurbita moschata (Rifu)cmolsiB370
Lsi05G001070Cucurbita moschata (Rifu)cmolsiB559