Csa3G239270 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G239270
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 15372466 .. 15373800 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAGTACAGCGCAGTTCAAGTGGGTCACATGAACGACTCAATAATTTATTCTTTAGTACGCTTCAGAGGCCTTCAATTCCATAAGAATCTGTGACCCAATTATAATTTTTCCCTCTTTCGCTTCCATTTTTTCATCTCTGCAAAATTCATGATGAGGTTGCTTTGAAATCAATCAAAGAGTGGGTTGCTATCGGACCCATTTCAAATCCCGCATTGCCTTGTTTCGGAATTCGAGGCCCGATCTTCGAACTTTTTGGATTATAAAATGCTCGTGGTAACTGGGATTCTTGGGGAGTTTTCGTTTTAAAAGTCTACTTCTGATTTTATCAATTTCTGTGCTTTCTTATGCTGGTTTTTGCTTTACAGGTCGAACTCAAGGAAGAAGAAACTCAAACAGTCAATTTCTTCTGGACCCACCAAGGGATTCTTGACTGAGTTGCTTCATTATTTTGTCTATGAACTGAAAATGATACAATTTATTGCTCTATATGAACAAGAAGATGCTCCAACCTCTCAAAGGTATTTGATGATATCATGGAGAAAGAGGAGTTATTTTTTTCAATGGTTTTTAGTTACGAATTAGGAAATGGGTTTTGGTGGGTATCTTTGATTTGGGTTTTGTTATTGTTTATTGCTGCCATTGTGCATTGCTAGCAACCCTTTTGTTTTCTGCTTCAAAAGGTAAGAAGTTAAAAGACATAATCATCTTGTGAGAACTGAAAGTAAGTTGGAGATGCAGCCTTTTGGAATAGTTCTCTCATTATGCCTTGAAAAGGAACAATATATGGTGTAGTTCTATGCTGGCTGGCAGACCACTGTGGAAAAGAATAGTATTATAGAGTACTTCTTTTATGCATAAAAGTTGCCTTTTCTCTCTTCAGTGTTTACATGTAGTTGTCACTAAGAGCCAGAAAACCTTGTGTTTGCTTTATCAATGGGTCATGACTTGTGATAGAGAAAATTGGAGGAGATGGGGTTGGGGGAGATGGAAAAGGGGAAAGGCAAGTGGGGTTGATTGCACTCTGTCCTTTCCCTGAAAACCAGGGACAATTCTCTCTTTTGTTCTTTTTCTTTTTTTCCTTTTTATGACTTGTATTTTGTTTTAGTTTGGCTTCTTACATGTTCTTCAGACTCAAGCACATGTAAAAGCAGCTATGGTTTTGGAATTTCATGGTCTTGTTGATAAGCTTATAGCCTTCATCCATCTTGCATATTACAATTCTACGATTTTGTGATCTGATACTTAATGATTTCCTGTAAGAATTGCTGCTCTTGGTTTGTTGTTTTCCCCCCATCATAACTGATGACTTCAGTTTTTCAACTTTGCTGTTC

mRNA sequence

ATGTCAGTACAGCGCAGTTCAAGTGGGTCACATGAACGACTCAATAATTTATTCTTTAGTTGCTTTGAAATCAATCAAAGAGTGGGTTGCTATCGGACCCATTTCAAATCCCGCATTGCCTTGTTTCGGAATTCGAGGCCCGATCTTCGAACTTTTTGGATTATAAAATGCTCGTGGTCGAACTCAAGGAAGAAGAAACTCAAACAGTCAATTTCTTCTGGACCCACCAAGGGATTCTTGACTGAGTTGCTTCATTATTTTGTCTATGAACTGAAAATGATACAATTTATTGCTCTATATGAACAAGAAGATGCTCCAACCTCTCAAAGGAAATGGGTTTTGGTGGGTATCTTTGATTTGGGTTTTGTTATTGTTTATTGCTGCCATTGTGCATTGCTAGCAACCCTTTTGTTTTCTGCTTCAAAAGAGAAAATTGGAGGAGATGGGGTTGGGGGAGATGGAAAAGGGGAAAGGCAAACTCAAGCACATGTAAAAGCAGCTATGGTTTTGGAATTTCATGGTCTTGTTGATAAGCTTATAGCCTTCATCCATCTTGCATATTACAATTCTACGATTTTGTGA

Coding sequence (CDS)

ATGTCAGTACAGCGCAGTTCAAGTGGGTCACATGAACGACTCAATAATTTATTCTTTAGTTGCTTTGAAATCAATCAAAGAGTGGGTTGCTATCGGACCCATTTCAAATCCCGCATTGCCTTGTTTCGGAATTCGAGGCCCGATCTTCGAACTTTTTGGATTATAAAATGCTCGTGGTCGAACTCAAGGAAGAAGAAACTCAAACAGTCAATTTCTTCTGGACCCACCAAGGGATTCTTGACTGAGTTGCTTCATTATTTTGTCTATGAACTGAAAATGATACAATTTATTGCTCTATATGAACAAGAAGATGCTCCAACCTCTCAAAGGAAATGGGTTTTGGTGGGTATCTTTGATTTGGGTTTTGTTATTGTTTATTGCTGCCATTGTGCATTGCTAGCAACCCTTTTGTTTTCTGCTTCAAAAGAGAAAATTGGAGGAGATGGGGTTGGGGGAGATGGAAAAGGGGAAAGGCAAACTCAAGCACATGTAAAAGCAGCTATGGTTTTGGAATTTCATGGTCTTGTTGATAAGCTTATAGCCTTCATCCATCTTGCATATTACAATTCTACGATTTTGTGA

Protein sequence

MSVQRSSSGSHERLNNLFFSCFEINQRVGCYRTHFKSRIALFRNSRPDLRTFWIIKCSWSNSRKKKLKQSISSGPTKGFLTELLHYFVYELKMIQFIALYEQEDAPTSQRKWVLVGIFDLGFVIVYCCHCALLATLLFSASKEKIGGDGVGGDGKGERQTQAHVKAAMVLEFHGLVDKLIAFIHLAYYNSTIL*
Homology
[Close]
BLAST of Csa3G239270 vs. TrEMBL
Match: A0A0A0L7A5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G239270 PE=4 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 4.6e-107
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 1 

Query: 1   MSVQRSSSGSHERLNNLFFSCFEINQRVGCYRTHFKSRIALFRNSRPDLRTFWIIKCSWS 60
           MSVQRSSSGSHERLNNLFFSCFEINQRVGCYRTHFKSRIALFRNSRPDLRTFWIIKCSWS
Sbjct: 1   MSVQRSSSGSHERLNNLFFSCFEINQRVGCYRTHFKSRIALFRNSRPDLRTFWIIKCSWS 60

Query: 61  NSRKKKLKQSISSGPTKGFLTELLHYFVYELKMIQFIALYEQEDAPTSQRKWVLVGIFDL 120
           NSRKKKLKQSISSGPTKGFLTELLHYFVYELKMIQFIALYEQEDAPTSQRKWVLVGIFDL
Sbjct: 61  NSRKKKLKQSISSGPTKGFLTELLHYFVYELKMIQFIALYEQEDAPTSQRKWVLVGIFDL 120

Query: 121 GFVIVYCCHCALLATLLFSASKEKIGGDGVGGDGKGERQTQAHVKAAMVLEFHGLVDKLI 180
           GFVIVYCCHCALLATLLFSASKEKIGGDGVGGDGKGERQTQAHVKAAMVLEFHGLVDKLI
Sbjct: 121 GFVIVYCCHCALLATLLFSASKEKIGGDGVGGDGKGERQTQAHVKAAMVLEFHGLVDKLI 180

Query: 181 AFIHLAYYNSTIL 194
           AFIHLAYYNSTIL
Sbjct: 181 AFIHLAYYNSTIL 193

[Close]
BLAST of Csa3G239270 vs. NCBI nr
Match: gi|700202530|gb|KGN57663.1| (hypothetical protein Csa_3G239270 [Cucumis sativus])

HSP 1 Score: 395.2 bits (1014), Expect = 6.6e-107
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 1 

Query: 1   MSVQRSSSGSHERLNNLFFSCFEINQRVGCYRTHFKSRIALFRNSRPDLRTFWIIKCSWS 60
           MSVQRSSSGSHERLNNLFFSCFEINQRVGCYRTHFKSRIALFRNSRPDLRTFWIIKCSWS
Sbjct: 1   MSVQRSSSGSHERLNNLFFSCFEINQRVGCYRTHFKSRIALFRNSRPDLRTFWIIKCSWS 60

Query: 61  NSRKKKLKQSISSGPTKGFLTELLHYFVYELKMIQFIALYEQEDAPTSQRKWVLVGIFDL 120
           NSRKKKLKQSISSGPTKGFLTELLHYFVYELKMIQFIALYEQEDAPTSQRKWVLVGIFDL
Sbjct: 61  NSRKKKLKQSISSGPTKGFLTELLHYFVYELKMIQFIALYEQEDAPTSQRKWVLVGIFDL 120

Query: 121 GFVIVYCCHCALLATLLFSASKEKIGGDGVGGDGKGERQTQAHVKAAMVLEFHGLVDKLI 180
           GFVIVYCCHCALLATLLFSASKEKIGGDGVGGDGKGERQTQAHVKAAMVLEFHGLVDKLI
Sbjct: 121 GFVIVYCCHCALLATLLFSASKEKIGGDGVGGDGKGERQTQAHVKAAMVLEFHGLVDKLI 180

Query: 181 AFIHLAYYNSTIL 194
           AFIHLAYYNSTIL
Sbjct: 181 AFIHLAYYNSTIL 193

The following BLAST results are available for this feature:
BLAST of Csa3G239270 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7A5_CUCSA4.6e-107100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G239270 PE=4 SV=1[more]
BLAST of Csa3G239270 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202530|gb|KGN57663.1|6.6e-107100.00hypothetical protein Csa_3G239270 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G239270.1Csa3G239270.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G239270Lsi05G001070Bottle gourd (USVL1VR-Ls)culsiB211
Csa3G239270CSPI03G19760Wild cucumber (PI 183967)cpicuB120
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G239270Cucurbita pepo (Zucchini)cpecuB036
Csa3G239270Cucurbita pepo (Zucchini)cpecuB040
Csa3G239270Cucurbita pepo (Zucchini)cpecuB206
Csa3G239270Cucurbita pepo (Zucchini)cpecuB722
Csa3G239270Bottle gourd (USVL1VR-Ls)culsiB152
Csa3G239270Cucumber (Gy14) v2cgybcuB109
Csa3G239270Cucumber (Gy14) v2cgybcuB208
Csa3G239270Melon (DHL92) v3.6.1cumedB160
Csa3G239270Melon (DHL92) v3.6.1cumedB238
Csa3G239270Silver-seed gourdcarcuB0567
Csa3G239270Silver-seed gourdcarcuB0569
Csa3G239270Silver-seed gourdcarcuB1001
Csa3G239270Watermelon (97103) v2cuwmbB174
Csa3G239270Watermelon (97103) v2cuwmbB215
Csa3G239270Wax gourdcuwgoB263
Csa3G239270Wax gourdcuwgoB283
Csa3G239270Cucumber (Chinese Long) v2cucuB098
Csa3G239270Cucumber (Gy14) v1cgycuB003
Csa3G239270Cucumber (Gy14) v1cgycuB308
Csa3G239270Cucurbita maxima (Rimu)cmacuB286
Csa3G239270Cucurbita maxima (Rimu)cmacuB321
Csa3G239270Cucurbita maxima (Rimu)cmacuB409
Csa3G239270Cucurbita maxima (Rimu)cmacuB412
Csa3G239270Cucurbita moschata (Rifu)cmocuB273
Csa3G239270Cucurbita moschata (Rifu)cmocuB310
Csa3G239270Cucurbita moschata (Rifu)cmocuB399
Csa3G239270Cucurbita moschata (Rifu)cmocuB401
Csa3G239270Cucurbita moschata (Rifu)cmocuB595
Csa3G239270Melon (DHL92) v3.5.1cumeB178
Csa3G239270Melon (DHL92) v3.5.1cumeB238
Csa3G239270Watermelon (Charleston Gray)cuwcgB205
Csa3G239270Watermelon (Charleston Gray)cuwcgB230
Csa3G239270Watermelon (97103) v1cuwmB243
Csa3G239270Watermelon (97103) v1cuwmB259