Csa3G239270.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa3G239270.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 15372466 .. 15373800 (-)
Sequence length582
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAGTACAGCGCAGTTCAAGTGGGTCACATGAACGACTCAATAATTTATTCTTTAGTACGCTTCAGAGGCCTTCAATTCCATAAGAATCTGTGACCCAATTATAATTTTTCCCTCTTTCGCTTCCATTTTTTCATCTCTGCAAAATTCATGATGAGGTTGCTTTGAAATCAATCAAAGAGTGGGTTGCTATCGGACCCATTTCAAATCCCGCATTGCCTTGTTTCGGAATTCGAGGCCCGATCTTCGAACTTTTTGGATTATAAAATGCTCGTGGTAACTGGGATTCTTGGGGAGTTTTCGTTTTAAAAGTCTACTTCTGATTTTATCAATTTCTGTGCTTTCTTATGCTGGTTTTTGCTTTACAGGTCGAACTCAAGGAAGAAGAAACTCAAACAGTCAATTTCTTCTGGACCCACCAAGGGATTCTTGACTGAGTTGCTTCATTATTTTGTCTATGAACTGAAAATGATACAATTTATTGCTCTATATGAACAAGAAGATGCTCCAACCTCTCAAAGGTATTTGATGATATCATGGAGAAAGAGGAGTTATTTTTTTCAATGGTTTTTAGTTACGAATTAGGAAATGGGTTTTGGTGGGTATCTTTGATTTGGGTTTTGTTATTGTTTATTGCTGCCATTGTGCATTGCTAGCAACCCTTTTGTTTTCTGCTTCAAAAGGTAAGAAGTTAAAAGACATAATCATCTTGTGAGAACTGAAAGTAAGTTGGAGATGCAGCCTTTTGGAATAGTTCTCTCATTATGCCTTGAAAAGGAACAATATATGGTGTAGTTCTATGCTGGCTGGCAGACCACTGTGGAAAAGAATAGTATTATAGAGTACTTCTTTTATGCATAAAAGTTGCCTTTTCTCTCTTCAGTGTTTACATGTAGTTGTCACTAAGAGCCAGAAAACCTTGTGTTTGCTTTATCAATGGGTCATGACTTGTGATAGAGAAAATTGGAGGAGATGGGGTTGGGGGAGATGGAAAAGGGGAAAGGCAAGTGGGGTTGATTGCACTCTGTCCTTTCCCTGAAAACCAGGGACAATTCTCTCTTTTGTTCTTTTTCTTTTTTTCCTTTTTATGACTTGTATTTTGTTTTAGTTTGGCTTCTTACATGTTCTTCAGACTCAAGCACATGTAAAAGCAGCTATGGTTTTGGAATTTCATGGTCTTGTTGATAAGCTTATAGCCTTCATCCATCTTGCATATTACAATTCTACGATTTTGTGATCTGATACTTAATGATTTCCTGTAAGAATTGCTGCTCTTGGTTTGTTGTTTTCCCCCCATCATAACTGATGACTTCAGTTTTTCAACTTTGCTGTTC

mRNA sequence

ATGTCAGTACAGCGCAGTTCAAGTGGGTCACATGAACGACTCAATAATTTATTCTTTAGTTGCTTTGAAATCAATCAAAGAGTGGGTTGCTATCGGACCCATTTCAAATCCCGCATTGCCTTGTTTCGGAATTCGAGGCCCGATCTTCGAACTTTTTGGATTATAAAATGCTCGTGGTCGAACTCAAGGAAGAAGAAACTCAAACAGTCAATTTCTTCTGGACCCACCAAGGGATTCTTGACTGAGTTGCTTCATTATTTTGTCTATGAACTGAAAATGATACAATTTATTGCTCTATATGAACAAGAAGATGCTCCAACCTCTCAAAGGAAATGGGTTTTGGTGGGTATCTTTGATTTGGGTTTTGTTATTGTTTATTGCTGCCATTGTGCATTGCTAGCAACCCTTTTGTTTTCTGCTTCAAAAGAGAAAATTGGAGGAGATGGGGTTGGGGGAGATGGAAAAGGGGAAAGGCAAACTCAAGCACATGTAAAAGCAGCTATGGTTTTGGAATTTCATGGTCTTGTTGATAAGCTTATAGCCTTCATCCATCTTGCATATTACAATTCTACGATTTTGTGA

Coding sequence (CDS)

ATGTCAGTACAGCGCAGTTCAAGTGGGTCACATGAACGACTCAATAATTTATTCTTTAGTTGCTTTGAAATCAATCAAAGAGTGGGTTGCTATCGGACCCATTTCAAATCCCGCATTGCCTTGTTTCGGAATTCGAGGCCCGATCTTCGAACTTTTTGGATTATAAAATGCTCGTGGTCGAACTCAAGGAAGAAGAAACTCAAACAGTCAATTTCTTCTGGACCCACCAAGGGATTCTTGACTGAGTTGCTTCATTATTTTGTCTATGAACTGAAAATGATACAATTTATTGCTCTATATGAACAAGAAGATGCTCCAACCTCTCAAAGGAAATGGGTTTTGGTGGGTATCTTTGATTTGGGTTTTGTTATTGTTTATTGCTGCCATTGTGCATTGCTAGCAACCCTTTTGTTTTCTGCTTCAAAAGAGAAAATTGGAGGAGATGGGGTTGGGGGAGATGGAAAAGGGGAAAGGCAAACTCAAGCACATGTAAAAGCAGCTATGGTTTTGGAATTTCATGGTCTTGTTGATAAGCTTATAGCCTTCATCCATCTTGCATATTACAATTCTACGATTTTGTGA

Protein sequence

MSVQRSSSGSHERLNNLFFSCFEINQRVGCYRTHFKSRIALFRNSRPDLRTFWIIKCSWSNSRKKKLKQSISSGPTKGFLTELLHYFVYELKMIQFIALYEQEDAPTSQRKWVLVGIFDLGFVIVYCCHCALLATLLFSASKEKIGGDGVGGDGKGERQTQAHVKAAMVLEFHGLVDKLIAFIHLAYYNSTIL*
Homology
[Close]
BLAST of Csa3G239270.1 vs. TrEMBL
Match: A0A0A0L7A5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G239270 PE=4 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 4.6e-107
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 1 

Query: 1   MSVQRSSSGSHERLNNLFFSCFEINQRVGCYRTHFKSRIALFRNSRPDLRTFWIIKCSWS 60
           MSVQRSSSGSHERLNNLFFSCFEINQRVGCYRTHFKSRIALFRNSRPDLRTFWIIKCSWS
Sbjct: 1   MSVQRSSSGSHERLNNLFFSCFEINQRVGCYRTHFKSRIALFRNSRPDLRTFWIIKCSWS 60

Query: 61  NSRKKKLKQSISSGPTKGFLTELLHYFVYELKMIQFIALYEQEDAPTSQRKWVLVGIFDL 120
           NSRKKKLKQSISSGPTKGFLTELLHYFVYELKMIQFIALYEQEDAPTSQRKWVLVGIFDL
Sbjct: 61  NSRKKKLKQSISSGPTKGFLTELLHYFVYELKMIQFIALYEQEDAPTSQRKWVLVGIFDL 120

Query: 121 GFVIVYCCHCALLATLLFSASKEKIGGDGVGGDGKGERQTQAHVKAAMVLEFHGLVDKLI 180
           GFVIVYCCHCALLATLLFSASKEKIGGDGVGGDGKGERQTQAHVKAAMVLEFHGLVDKLI
Sbjct: 121 GFVIVYCCHCALLATLLFSASKEKIGGDGVGGDGKGERQTQAHVKAAMVLEFHGLVDKLI 180

Query: 181 AFIHLAYYNSTIL 194
           AFIHLAYYNSTIL
Sbjct: 181 AFIHLAYYNSTIL 193

[Close]
BLAST of Csa3G239270.1 vs. NCBI nr
Match: gi|700202530|gb|KGN57663.1| (hypothetical protein Csa_3G239270 [Cucumis sativus])

HSP 1 Score: 395.2 bits (1014), Expect = 6.6e-107
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 1 

Query: 1   MSVQRSSSGSHERLNNLFFSCFEINQRVGCYRTHFKSRIALFRNSRPDLRTFWIIKCSWS 60
           MSVQRSSSGSHERLNNLFFSCFEINQRVGCYRTHFKSRIALFRNSRPDLRTFWIIKCSWS
Sbjct: 1   MSVQRSSSGSHERLNNLFFSCFEINQRVGCYRTHFKSRIALFRNSRPDLRTFWIIKCSWS 60

Query: 61  NSRKKKLKQSISSGPTKGFLTELLHYFVYELKMIQFIALYEQEDAPTSQRKWVLVGIFDL 120
           NSRKKKLKQSISSGPTKGFLTELLHYFVYELKMIQFIALYEQEDAPTSQRKWVLVGIFDL
Sbjct: 61  NSRKKKLKQSISSGPTKGFLTELLHYFVYELKMIQFIALYEQEDAPTSQRKWVLVGIFDL 120

Query: 121 GFVIVYCCHCALLATLLFSASKEKIGGDGVGGDGKGERQTQAHVKAAMVLEFHGLVDKLI 180
           GFVIVYCCHCALLATLLFSASKEKIGGDGVGGDGKGERQTQAHVKAAMVLEFHGLVDKLI
Sbjct: 121 GFVIVYCCHCALLATLLFSASKEKIGGDGVGGDGKGERQTQAHVKAAMVLEFHGLVDKLI 180

Query: 181 AFIHLAYYNSTIL 194
           AFIHLAYYNSTIL
Sbjct: 181 AFIHLAYYNSTIL 193

The following BLAST results are available for this feature:
BLAST of Csa3G239270.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7A5_CUCSA4.6e-107100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G239270 PE=4 SV=1[more]
BLAST of Csa3G239270.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202530|gb|KGN57663.1|6.6e-107100.00hypothetical protein Csa_3G239270 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa3G239270Csa3G239270gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa3G239270.1Csa3G239270.1-proteinpolypeptide


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa3G239270.1.utr3p1Csa3G239270.1.utr3p1three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa3G239270.1.cds6Csa3G239270.1.cds6CDS
Csa3G239270.1.cds5Csa3G239270.1.cds5CDS
Csa3G239270.1.cds4Csa3G239270.1.cds4CDS
Csa3G239270.1.cds3Csa3G239270.1.cds3CDS
Csa3G239270.1.cds2Csa3G239270.1.cds2CDS
Csa3G239270.1.cds1Csa3G239270.1.cds1CDS