CsaV3_3G019810 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G019810
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 15615464 .. 15616701 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAGTACAGCGCAGTTCAAGTGGGTCACATGAACGACTCAATAATTTATTCTTTAGTACGCTTCAGAGGCCTTCAATTCCATAAGAATCTGTGACCCAATTATAATTTTTCCCTCTTTCGCTTCCATTTTTTCATCTCTGCAAAATTCATGATGAGGTTGCTTTGAAATCAATCAAAGAGTGGGTTGCTATCGGACCCATTTCAAATCCCGCATTGCCTTGTTTCGGAATTCGAGGCCCGATCTTCGAACTTTTTGGATTATAAAATGCTCGTGGTAACTGGGATTCTTGGGGAGTTTTCGTTTTAAAAGTCTACTTCTGATTTTATCAATTTCTGTGCTTTCTTATGCTGGTTTTTGCTTTACAGGTCGAACTCAAGGAAGAAGAAACTCAAACAGTCAATTTCTTCTGGACCCACCAAGGGATTCTTGACTGAGTTGCTTCATTATTTTGTCTATGAACTGAAAATGATACAATTTATTGCTCTATATGAACAAGAAGATGCTCCAACCTCTCAAAGGTATTTGATGATATCATGGAGAAAGAGGAGTTATTTTTTTCAATGGTTTTTAGTTACGAATTAGGAAATGGGTTTTGGTGGGTATCTTTGATTTGGGTTTTGTTATTGTTTATTGCTGCCATTGTGCATTGCTAGCAACCCTTTTGTTTTCTGCTTCAAAAGGTAAGAAGTTAAAAGACATAATCATCTTGTGAGAACTGAAAGTAAGTTGGAGATGCAGCCTTTTGGAATAGTTCTCTCATTATGCCTTGAAAAGGAACAATATATGGTGTAGTTCTATGCTGGCTGGCAGACCACTGTGGAAAAGAATAGTATTATAGAGTACTTCTTTTATGCATAAAAGTTGCCTTTTCTCTCTTCAGTGTTTACATGTAGTTGTCACTAAGAGCCAGAAAACCTTGTGTTTGCTTTATCAATGGGTCATGACTTGTGATAGAGAAAATTGGAGGAGATGGGGTTGGGGGAGATGGAAAAGGGGAAAGGCAAGTGGGGTTGATTGCACTCTGTCCTTTCCCTGAAAACCAGGGACAATTCTCTCTTTTGTTCTTTTTCTTTTTTTCCTTTTTATGACTTGTATTTTGTTTTAGTTTGGCTTCTTACATGTTCTTCAGACTCAAGCACATGTAAAAGCAGCTATGGTTTTGGAATTTCATGGTCTTGTTGATAAGCTTATAGCCTTCATCCATCTTGCATATTACAATTCTACGATTTTGTGA

mRNA sequence

ATGTCAGTACAGCGCAGTTCAAGTGGGTCACATGAACGACTCAATAATTTATTCTTTAGTTGCTTTGAAATCAATCAAAGAGTGGGTTGCTATCGGACCCATTTCAAATCCCGCATTGCCTTGTTTCGGAATTCGAGGCCCGATCTTCGAACTTTTTGGATTATAAAATGCTCGTGGTCGAACTCAAGGAAGAAGAAACTCAAACAGTCAATTTCTTCTGGACCCACCAAGGGATTCTTGACTGAGTTGCTTCATTATTTTGTCTATGAACTGAAAATGATACAATTTATTGCTCTATATGAACAAGAAGATGCTCCAACCTCTCAAAGGAAATGGGTTTTGGTGGGTATCTTTGATTTGGGTTTTGTTATTGTTTATTGCTGCCATTGTGCATTGCTAGCAACCCTTTTGTTTTCTGCTTCAAAAGAGAAAATTGGAGGAGATGGGGTTGGGGGAGATGGAAAAGGGGAAAGGCAAACTCAAGCACATGTAAAAGCAGCTATGGTTTTGGAATTTCATGGTCTTGTTGATAAGCTTATAGCCTTCATCCATCTTGCATATTACAATTCTACGATTTTGTGA

Coding sequence (CDS)

ATGTCAGTACAGCGCAGTTCAAGTGGGTCACATGAACGACTCAATAATTTATTCTTTAGTTGCTTTGAAATCAATCAAAGAGTGGGTTGCTATCGGACCCATTTCAAATCCCGCATTGCCTTGTTTCGGAATTCGAGGCCCGATCTTCGAACTTTTTGGATTATAAAATGCTCGTGGTCGAACTCAAGGAAGAAGAAACTCAAACAGTCAATTTCTTCTGGACCCACCAAGGGATTCTTGACTGAGTTGCTTCATTATTTTGTCTATGAACTGAAAATGATACAATTTATTGCTCTATATGAACAAGAAGATGCTCCAACCTCTCAAAGGAAATGGGTTTTGGTGGGTATCTTTGATTTGGGTTTTGTTATTGTTTATTGCTGCCATTGTGCATTGCTAGCAACCCTTTTGTTTTCTGCTTCAAAAGAGAAAATTGGAGGAGATGGGGTTGGGGGAGATGGAAAAGGGGAAAGGCAAACTCAAGCACATGTAAAAGCAGCTATGGTTTTGGAATTTCATGGTCTTGTTGATAAGCTTATAGCCTTCATCCATCTTGCATATTACAATTCTACGATTTTGTGA

Protein sequence

MSVQRSSSGSHERLNNLFFSCFEINQRVGCYRTHFKSRIALFRNSRPDLRTFWIIKCSWSNSRKKKLKQSISSGPTKGFLTELLHYFVYELKMIQFIALYEQEDAPTSQRKWVLVGIFDLGFVIVYCCHCALLATLLFSASKEKIGGDGVGGDGKGERQTQAHVKAAMVLEFHGLVDKLIAFIHLAYYNSTIL
Homology
[Close]
BLAST of CsaV3_3G019810 vs. NCBI nr
Match: KGN57663.1 (hypothetical protein Csa_3G239270 [Cucumis sativus])

HSP 1 Score: 383.3 bits (983), Expect = 5.0e-103
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0 

Query: 1   MSVQRSSSGSHERLNNLFFSCFEINQRVGCYRTHFKSRIALFRNSRPDLRTFWIIKCSWS 60
           MSVQRSSSGSHERLNNLFFSCFEINQRVGCYRTHFKSRIALFRNSRPDLRTFWIIKCSWS
Sbjct: 1   MSVQRSSSGSHERLNNLFFSCFEINQRVGCYRTHFKSRIALFRNSRPDLRTFWIIKCSWS 60

Query: 61  NSRKKKLKQSISSGPTKGFLTELLHYFVYELKMIQFIALYEQEDAPTSQRKWVLVGIFDL 120
           NSRKKKLKQSISSGPTKGFLTELLHYFVYELKMIQFIALYEQEDAPTSQRKWVLVGIFDL
Sbjct: 61  NSRKKKLKQSISSGPTKGFLTELLHYFVYELKMIQFIALYEQEDAPTSQRKWVLVGIFDL 120

Query: 121 GFVIVYCCHCALLATLLFSASKEKIGGDGVXXXXKGERQTQAHVKAAMVLEFHGLVDKLI 180
           GFVIVYCCHCALLATLLFSASKEKIGGDGVXXXXKGERQTQAHVKAAMVLEFHGLVDKLI
Sbjct: 121 GFVIVYCCHCALLATLLFSASKEKIGGDGVXXXXKGERQTQAHVKAAMVLEFHGLVDKLI 180

Query: 181 AFIHLAYYNSTIL 194
           AFIHLAYYNSTIL
Sbjct: 181 AFIHLAYYNSTIL 193

[Close]
BLAST of CsaV3_3G019810 vs. TrEMBL
Match: tr|A0A0A0L7A5|A0A0A0L7A5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G239270 PE=4 SV=1)

HSP 1 Score: 383.3 bits (983), Expect = 3.3e-103
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0 

Query: 1   MSVQRSSSGSHERLNNLFFSCFEINQRVGCYRTHFKSRIALFRNSRPDLRTFWIIKCSWS 60
           MSVQRSSSGSHERLNNLFFSCFEINQRVGCYRTHFKSRIALFRNSRPDLRTFWIIKCSWS
Sbjct: 1   MSVQRSSSGSHERLNNLFFSCFEINQRVGCYRTHFKSRIALFRNSRPDLRTFWIIKCSWS 60

Query: 61  NSRKKKLKQSISSGPTKGFLTELLHYFVYELKMIQFIALYEQEDAPTSQRKWVLVGIFDL 120
           NSRKKKLKQSISSGPTKGFLTELLHYFVYELKMIQFIALYEQEDAPTSQRKWVLVGIFDL
Sbjct: 61  NSRKKKLKQSISSGPTKGFLTELLHYFVYELKMIQFIALYEQEDAPTSQRKWVLVGIFDL 120

Query: 121 GFVIVYCCHCALLATLLFSASKEKIGGDGVXXXXKGERQTQAHVKAAMVLEFHGLVDKLI 180
           GFVIVYCCHCALLATLLFSASKEKIGGDGVXXXXKGERQTQAHVKAAMVLEFHGLVDKLI
Sbjct: 121 GFVIVYCCHCALLATLLFSASKEKIGGDGVXXXXKGERQTQAHVKAAMVLEFHGLVDKLI 180

Query: 181 AFIHLAYYNSTIL 194
           AFIHLAYYNSTIL
Sbjct: 181 AFIHLAYYNSTIL 193

The following BLAST results are available for this feature:
BLAST of CsaV3_3G019810 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57663.15.0e-103100.00hypothetical protein Csa_3G239270 [Cucumis sativus][more]
BLAST of CsaV3_3G019810 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G019810 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G019810 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L7A5|A0A0A0L7A5_CUCSA3.3e-103100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G239270 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G019810.1CsaV3_3G019810.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G019810CSPI03G19760Wild cucumber (PI 183967)cpicucB144
CsaV3_3G019810Lsi05G001070Bottle gourd (USVL1VR-Ls)cuclsiB230
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G019810Cucumber (Chinese Long) v3cuccucB123
CsaV3_3G019810Silver-seed gourdcarcucB0574
CsaV3_3G019810Silver-seed gourdcarcucB0576
CsaV3_3G019810Silver-seed gourdcarcucB1030
CsaV3_3G019810Cucumber (Gy14) v2cgybcucB117
CsaV3_3G019810Cucumber (Gy14) v2cgybcucB213
CsaV3_3G019810Cucumber (Gy14) v1cgycucB006
CsaV3_3G019810Cucumber (Gy14) v1cgycucB326
CsaV3_3G019810Cucurbita maxima (Rimu)cmacucB0334
CsaV3_3G019810Cucurbita maxima (Rimu)cmacucB0374
CsaV3_3G019810Cucurbita maxima (Rimu)cmacucB0489
CsaV3_3G019810Cucurbita maxima (Rimu)cmacucB0491
CsaV3_3G019810Cucurbita maxima (Rimu)cmacucB0723
CsaV3_3G019810Cucurbita moschata (Rifu)cmocucB0328
CsaV3_3G019810Cucurbita moschata (Rifu)cmocucB0373
CsaV3_3G019810Cucurbita moschata (Rifu)cmocucB0478
CsaV3_3G019810Cucurbita moschata (Rifu)cmocucB0480
CsaV3_3G019810Cucurbita moschata (Rifu)cmocucB0710
CsaV3_3G019810Cucurbita pepo (Zucchini)cpecucB0036
CsaV3_3G019810Cucurbita pepo (Zucchini)cpecucB0041
CsaV3_3G019810Cucurbita pepo (Zucchini)cpecucB0204
CsaV3_3G019810Cucurbita pepo (Zucchini)cpecucB0248
CsaV3_3G019810Cucurbita pepo (Zucchini)cpecucB0899
CsaV3_3G019810Wild cucumber (PI 183967)cpicucB266
CsaV3_3G019810Bottle gourd (USVL1VR-Ls)cuclsiB165
CsaV3_3G019810Melon (DHL92) v3.5.1cucmeB171
CsaV3_3G019810Melon (DHL92) v3.5.1cucmeB247
CsaV3_3G019810Melon (DHL92) v3.6.1cucmedB161
CsaV3_3G019810Melon (DHL92) v3.6.1cucmedB246
CsaV3_3G019810Watermelon (Charleston Gray)cucwcgB208
CsaV3_3G019810Watermelon (Charleston Gray)cucwcgB238
CsaV3_3G019810Watermelon (97103) v1cucwmB252
CsaV3_3G019810Watermelon (97103) v1cucwmB268
CsaV3_3G019810Watermelon (97103) v2cucwmbB175
CsaV3_3G019810Watermelon (97103) v2cucwmbB217
CsaV3_3G019810Wax gourdcucwgoB266
CsaV3_3G019810Wax gourdcucwgoB287