Lsi04G019800 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi04G019800
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	50S ribosomal protein L13, putative
Location	chr04 : 26855033 .. 26858324 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAATTTATCCGTTCTTCCGGTTTCCCATTTCTCATCTTCGCATTCACAAAGGCAAGAGTCTTATCCACTATCCATAGCAGAAATTTCTCAACTGAAACACCGCCAAAGCTACAATGGCGATGCTCTGTGCTTCCTCCTCTACACCCACTTTCTCTTTACATTCCACTCTTTTCAATGGAAGCACAAGTAACAGAGGCATTCCCAGAAAGTCACTCCTTGCTGGGTTTCCACTCCCACATTCAAAATCTTCTTTTCTTCTAACCCAGACCACGATTTCTCTAAACTCCAACCCCAAGAGTCCGCTCCTTCAAGTGCGAGCTCAGGAGCTGGATCGTGTCCCTTTAGAACAACGGTGGATGTTCGAGGGCGACGAGCTCGACGGCCCTGTACGTCTCTTAATCTTACAATATGTTTGTTTGTTTGCTTGCGCTAAATCTGGTAGTGAAAATGGTCTTGTAGATTTGAGACTAATTGAACTCGTTCTTCGCATAACACGCTAATGGGTTCCTTGCAAACCTAAAACGCCTATCCAATTTTGTTATCCCCAGCTTCCTATGAGCCCTCAATCATTCGTGTTCTTTTAGTTGGGTTGTTGTTTTGTTGTTCCTTTGGGGGCTACTACATCTAACTTTTGGCTTCTCCACATTGCAATTTCGCTTTCCATTAACATACTGAAGTTAATTTTTACAGAAACCATCAATAAAAAAACTGGGTACAACTGTAATTGCCCTTATAACTGAACATACAATCCTCTTTTTACTTGTTAGTTGGTAGGCCAATTTGATGCCCACTTTCTGAATTTTGAAGAATTATTTCCTGTTTTTGCTTGTTTATTTTCCCTTTTCAGATTGGATACTTAGCAGTCGTAATTCTTTTCCATTCAGGACATATGGAATAAAACATGGTACCCGAAGGCTGCAGATCATGTGAACACAGAAAAACCTTGGTATGTGGTTGATGCCACTGATAAGATTTTGGGAAGACTAGCTTCGACCATTGCCAATCATATCCGAGGGAAGGATTTGGCAACCTACACTCCAAGTGTGGATATGGGGGCTTTTGTGATTGTGGTATGTGGTTGTACTTGTACATGATGTTTTATTGTGACTTTCATAAAAAAGAATGATCTATTGTGGCTGCAATCACTACAACAGAGTTTCGGTATCAGCATCAATGAATGGTTTCCGCTTTTGTCTACTCAACTTGAACCTTCTTGCTATTTGTTTACATTTAGTTGTTTATTCACTGTCACCCATGAATTATACTTATTCTCTTGATCCTACATAGGTAAATGCAGAAAAAGTTGCGGTGTCTGGTAGAAAGAGGACACAAAAACTATACAGGAGGCATTCAGGGCGACCAGGTGGTATGACCGTAGAAACTTTTGACCAGCTACAGCAGAGAATTCCTGAAAGAATTATTGAGCATGCTGTTCGTGGTATGCTTCCAAAAGGGAGGGTAAGTGATTCGTACTACTTAAGTGCCATATTGTATTATATGCACGCAGACTGTTCTGCAAACTGAATATTTGTGGGTGATAGAATGATTGTTTAAGTTTTGAGCAACGCTTCATTTAGGAAAACTGTATCAGTTTTGTTAGAAGCTTTAGTAGGTCGGTTAAGATAGCTTTTGGTGTTTTGGTTGTTGTAGACTATTGGTTAGCTATGTTCCATCTTACAGAAGAGTTCCTCAAACTTATCACCAATGGGGTTTTACAGCTTCAGATTCATATGTAAGTTGTTCCAATGGCTCTCACATTCTGTGACATAGGATTCTAGAAGCAACGAGTTGGTGTATATGACAAATAATGGCATCTTTCAGTTTATTAGAACTAGAAGAATCTCCAATGATAAGAAAATAAAATTTCGGGTGGCCTTGTCTTCAAGAGGATTTCACAACCTGCATTGTAATTTGTGGGTTAATGGTGTGGAGGATGTGACAAGAATGAGTTGCTTGGGAAAGTTTGAAGTGTTTGAGAAACTAACATATGGTCTTTTGCTTTATTCCTTGGCTACTCTACTGGCATTCTGTTGGTTACATTTAATAGTAAAAATCTTTGACCATTTATGGTCATATTGTCACTACCAGAATCCAAGATCTGTACGGTTGATGGAGCCTGACAACTGTGTGTAAGGTGATTTCTTGGCAATTCAGGACCAGGAAAGCTAAAAAATTTGCTTTGGCAGTATATTTCGAAATCTTTTGGTTGTCTTTTGAACTACAATCATTGATTTGAAAATTTGATGCCTTCTGAATACCTAGTATATGTTATAGGATAAATTTGGGTATCAGATAACATTATCTTAAATTCAGCTCTCTAACAAGGACACAGTAAAATCTACATTAGGAAAAGGAACGACTTTTCATCTGTGGACAGCGTCTGCACAATATGTTTTCCTTTTGAATCTATTTCAAAAGAATATTAAACAGTCCTGCATCATCCTTTGAAGAATTCGTTTGTGACAAACTGGCAGTTGTTTGTGATGTGTATTCTGACGTTGGAACTTCCCGCCGTTGTCAGTGCTTTGACACGACGTGAATGAAACTTTTTTTTTTAGATTTTTCTCAAGTAGCTGTGAAGTATTTGCCTTGCAATAACAAGGCGCCTTGCTTGTAATACTGTTAACCATCTCACTTTTTATTTCATGTAAACTGCTTCATATTGTGGTGTTTAGGAATTTCCCTGTTTCCTGCCTCCATTGATGTTCCTGATAATTTATTGGCTGTTTCAAACCATGGCAATTTATGTGCAGCTTGGAAGAGCACTTTTTAACCACTTGAAGGTTTACAAAGGACCAGACCATCCACATGATGCACAAAAGCCAGTTGAGCTGCCAATTAGGGACAAAAGGATAAACAAAGAAAGATAGTATGATCTACTAAGAGAAGACAAACGAGGAAGAGACAAAGCTCTCTCATATGAGGTCCCCAATGTTCATAAAATCGAGTTAGAGTTTTCATGCTTCAACTCAGTTTGATATCAGTATTTGATCTGTAATTTGATTCCAAATTCTAGTCTCCTCTGATAACATCTTAGTCCTAAGTTGCGTTTTCGAAGTTATTAATTCAGAAGAGGAAAATTTTCAAATCTTGCCCTGTTGAAGGTCGTGATAATGGTAATTTGATTACATTTGTTGATTGATTTCCCTAAAAGGCATATTAGTATCACAATCCATGAAAGTGGTGATCTTTTGGATTCTAACTTTATATGGATTGAGCTGAATTTGTACAACAATGAACATTAGTTTATAATTACATGCATATATATTTCAGTGGAAGCTTTAGAGGAAA

mRNA sequence

CAAATTTATCCGTTCTTCCGGTTTCCCATTTCTCATCTTCGCATTCACAAAGGCAAGAGTCTTATCCACTATCCATAGCAGAAATTTCTCAACTGAAACACCGCCAAAGCTACAATGGCGATGCTCTGTGCTTCCTCCTCTACACCCACTTTCTCTTTACATTCCACTCTTTTCAATGGAAGCACAAGTAACAGAGGCATTCCCAGAAAGTCACTCCTTGCTGGGTTTCCACTCCCACATTCAAAATCTTCTTTTCTTCTAACCCAGACCACGATTTCTCTAAACTCCAACCCCAAGAGTCCGCTCCTTCAAGTGCGAGCTCAGGAGCTGGATCGTGTCCCTTTAGAACAACGGTGGATGTTCGAGGGCGACGAGCTCGACGGCCCTGACATATGGAATAAAACATGGTACCCGAAGGCTGCAGATCATGTGAACACAGAAAAACCTTGGTATGTGGTTGATGCCACTGATAAGATTTTGGGAAGACTAGCTTCGACCATTGCCAATCATATCCGAGGGAAGGATTTGGCAACCTACACTCCAAGTGTGGATATGGGGGCTTTTGTGATTGTGGTAAATGCAGAAAAAGTTGCGGTGTCTGGTAGAAAGAGGACACAAAAACTATACAGGAGGCATTCAGGGCGACCAGGTGGTATGACCGTAGAAACTTTTGACCAGCTACAGCAGAGAATTCCTGAAAGAATTATTGAGCATGCTGTTCGTGGTATGCTTCCAAAAGGGAGGCTTGGAAGAGCACTTTTTAACCACTTGAAGGTTTACAAAGGACCAGACCATCCACATGATGCACAAAAGCCAGTTGAGCTGCCAATTAGGGACAAAAGGATAAACAAAGAAAGATAGTATGATCTACTAAGAGAAGACAAACGAGGAAGAGACAAAGCTCTCTCATATGAGGTCCCCAATGTTCATAAAATCGAGTTAGAGTTTTCATGCTTCAACTCAGTTTGATATCAGTATTTGATCTGTAATTTGATTCCAAATTCTAGTCTCCTCTGATAACATCTTAGTCCTAAGTTGCGTTTTCGAAGTTATTAATTCAGAAGAGGAAAATTTTCAAATCTTGCCCTGTTGAAGGTCGTGATAATGGTAATTTGATTACATTTGTTGATTGATTTCCCTAAAAGGCATATTAGTATCACAATCCATGAAAGTGGTGATCTTTTGGATTCTAACTTTATATGGATTGAGCTGAATTTGTACAACAATGAACATTAGTTTATAATTACATGCATATATATTTCAGTGGAAGCTTTAGAGGAAA

Coding sequence (CDS)

ATGGCGATGCTCTGTGCTTCCTCCTCTACACCCACTTTCTCTTTACATTCCACTCTTTTCAATGGAAGCACAAGTAACAGAGGCATTCCCAGAAAGTCACTCCTTGCTGGGTTTCCACTCCCACATTCAAAATCTTCTTTTCTTCTAACCCAGACCACGATTTCTCTAAACTCCAACCCCAAGAGTCCGCTCCTTCAAGTGCGAGCTCAGGAGCTGGATCGTGTCCCTTTAGAACAACGGTGGATGTTCGAGGGCGACGAGCTCGACGGCCCTGACATATGGAATAAAACATGGTACCCGAAGGCTGCAGATCATGTGAACACAGAAAAACCTTGGTATGTGGTTGATGCCACTGATAAGATTTTGGGAAGACTAGCTTCGACCATTGCCAATCATATCCGAGGGAAGGATTTGGCAACCTACACTCCAAGTGTGGATATGGGGGCTTTTGTGATTGTGGTAAATGCAGAAAAAGTTGCGGTGTCTGGTAGAAAGAGGACACAAAAACTATACAGGAGGCATTCAGGGCGACCAGGTGGTATGACCGTAGAAACTTTTGACCAGCTACAGCAGAGAATTCCTGAAAGAATTATTGAGCATGCTGTTCGTGGTATGCTTCCAAAAGGGAGGCTTGGAAGAGCACTTTTTAACCACTTGAAGGTTTACAAAGGACCAGACCATCCACATGATGCACAAAAGCCAGTTGAGCTGCCAATTAGGGACAAAAGGATAAACAAAGAAAGATAG

Protein sequence

MAMLCASSSTPTFSLHSTLFNGSTSNRGIPRKSLLAGFPLPHSKSSFLLTQTTISLNSNPKSPLLQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHDAQKPVELPIRDKRINKER

Homology

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BLAST of Lsi04G019800 vs. Swiss-Prot
Match: RK13_ARATH (50S ribosomal protein L13, chloroplastic OS=Arabidopsis thaliana GN=RPL13 PE=2 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 1.4e-90
Identity = 171/253 (67.59%), Postives = 198/253 (78.26%), Query Frame = 1


Query: 1   MAMLCASSSTPTFSLHSTLFNGSTSNRGIPRKSLLAGFPLPHSKSSFLLTQTTISLNSNP 60
           MA+LC+SS+         L + S  + G  RKS   GF L    ++       + + +N 
Sbjct: 1   MAVLCSSSTV-------ILSSSSVKSSGSERKSPFLGFSL----TAISKPSVRVGIYANS 60

Query: 61  KSPLLQVRAQE-----LDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVV 120
           K  L QV+ +         VP  QRWMF+ +E +GPDIWN TWYPKA+DHVNT+KPW+VV
Sbjct: 61  KRGL-QVKCEAEPTTTTSLVPANQRWMFDEEEANGPDIWNTTWYPKASDHVNTDKPWFVV 120

Query: 121 DATDKILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHS 180
           DATDKILGRLASTIANHIRGK+LA+YTPSVDMGAFVIVVNAEKVAVSG+KR QKLYRRHS
Sbjct: 121 DATDKILGRLASTIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHS 180

Query: 181 GRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHDAQKPV 240
           GRPGGMTVETFDQLQQRIPERI+EHAVRGMLPKGRLGRALFNHLKVYKGPDHPH+AQKP+
Sbjct: 181 GRPGGMTVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPL 240

Query: 241 ELPIRDKRINKER 249
           +LPIRDKRI  ++
Sbjct: 241 DLPIRDKRIQLQK 241

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BLAST of Lsi04G019800 vs. Swiss-Prot
Match: RK13_SPIOL (50S ribosomal protein L13, chloroplastic OS=Spinacia oleracea GN=RPL13 PE=1 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 4.7e-81
Identity = 156/250 (62.40%), Postives = 186/250 (74.40%), Query Frame = 1


Query: 3   MLCASSST-PTFSLHSTLFNGSTSNRGI---PRKSLLAGFPLPHSKSSFLLTQTTISLNS 62
           M CASS T P+     + F  +     +   PR ++ A   +   KS+   T+ T     
Sbjct: 4   MACASSLTFPSAQTQKSFFGTNVKQTPVLSFPRPTVAAAVAVSARKSTSASTKCTEEWRQ 63

Query: 63  NPKSPLLQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDAT 122
             ++   +     +  VPL+QRWMF  +E  GPDIWN TWYPK+ADHV T+K WYVVDAT
Sbjct: 64  LKEAVKKEFA---IPHVPLDQRWMFTLEEATGPDIWNTTWYPKSADHVPTDKKWYVVDAT 123

Query: 123 DKILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRP 182
           D ILGR+ASTIA HIRGK+LA+YTPSVDMGAFVIVVNA+KVAVSG+KRTQKLYRRHSGRP
Sbjct: 124 DLILGRMASTIAIHIRGKNLASYTPSVDMGAFVIVVNADKVAVSGKKRTQKLYRRHSGRP 183

Query: 183 GGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHDAQKPVELP 242
           GG+  ETFDQLQ+RIPERIIEHAVRGMLPKGRLGR LFNHLKVYKG +HPH AQ+P++LP
Sbjct: 184 GGLKEETFDQLQKRIPERIIEHAVRGMLPKGRLGRYLFNHLKVYKGAEHPHQAQQPIDLP 243

Query: 243 IRDKRINKER 249
           +RDKRI  E+
Sbjct: 244 LRDKRIRVEK 250

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BLAST of Lsi04G019800 vs. Swiss-Prot
Match: RL13_ANAVT (50S ribosomal protein L13 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplM PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 6.5e-51
Identity = 101/145 (69.66%), Postives = 115/145 (79.31%), Query Frame = 1


Query: 95  NKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLATYTPSVDMGAFVIVV 154
           +KT+ P      + E+ WYVVDATDK LGRLAS IA  +RGK+ A YTP +D G FVIVV
Sbjct: 2   SKTYLPPQE---SLERDWYVVDATDKRLGRLASEIAMILRGKNKAHYTPHLDTGDFVIVV 61

Query: 155 NAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRA 214
           NAEKVAV+G+KRTQKLYRRHSGRPGGM  ETF +LQQR+PERI+EHAV+GMLPK  LG+ 
Sbjct: 62  NAEKVAVTGKKRTQKLYRRHSGRPGGMKTETFAKLQQRLPERIVEHAVKGMLPKNSLGKQ 121

Query: 215 LFNHLKVYKGPDHPHDAQKPVELPI 240
           LF  LKVY GP HPHDAQKP EL I
Sbjct: 122 LFTKLKVYAGPTHPHDAQKPKELNI 143

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BLAST of Lsi04G019800 vs. Swiss-Prot
Match: RL13_NOSS1 (50S ribosomal protein L13 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rplM PE=3 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.9e-50
Identity = 100/145 (68.97%), Postives = 115/145 (79.31%), Query Frame = 1


Query: 95  NKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLATYTPSVDMGAFVIVV 154
           +KT+ P      + E+ WYVVDATDK LGRLAS IA  +RGK+ A YTP +D G FVIVV
Sbjct: 2   SKTYLPPQE---SLERDWYVVDATDKRLGRLASEIAMILRGKNKAHYTPHLDTGDFVIVV 61

Query: 155 NAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRA 214
           NA+KVAV+G+KRTQKLYRRHSGRPGGM  ETF +LQQR+PERI+EHAV+GMLPK  LG+ 
Sbjct: 62  NAKKVAVTGKKRTQKLYRRHSGRPGGMKTETFAKLQQRLPERIVEHAVKGMLPKNSLGKQ 121

Query: 215 LFNHLKVYKGPDHPHDAQKPVELPI 240
           LF  LKVY GP HPHDAQKP EL I
Sbjct: 122 LFTKLKVYAGPTHPHDAQKPKELNI 143

[Close]

BLAST of Lsi04G019800 vs. Swiss-Prot
Match: RL13_CYAP4 (50S ribosomal protein L13 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplM PE=3 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 4.7e-49
Identity = 97/146 (66.44%), Postives = 112/146 (76.71%), Query Frame = 1


Query: 95  NKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLATYTPSVDMGAFVIVV 154
           NKT+ P      + E  WYVVDAT++ LGRLA+ IA  +RGK    YTPS+D G FVIVV
Sbjct: 2   NKTYLPSTT---SLEPKWYVVDATEQHLGRLATQIAMILRGKTKPIYTPSMDTGDFVIVV 61

Query: 155 NAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRA 214
           NAEKVAV+G+KRTQK+YRRHSGRPGGM  ETF +LQ R+PERIIEHAV+GMLPK  LGR 
Sbjct: 62  NAEKVAVTGKKRTQKIYRRHSGRPGGMKTETFAKLQSRLPERIIEHAVKGMLPKNTLGRN 121

Query: 215 LFNHLKVYKGPDHPHDAQKPVELPIR 241
           LF  LKVY GPDHPH AQKP  L ++
Sbjct: 122 LFTKLKVYAGPDHPHQAQKPEVLTLK 144

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BLAST of Lsi04G019800 vs. TrEMBL
Match: A0A0A0KZG1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G623380 PE=3 SV=1)

HSP 1 Score: 468.4 bits (1204), Expect = 5.5e-129
Identity = 229/248 (92.34%), Postives = 236/248 (95.16%), Query Frame = 1


Query: 1   MAMLCASSSTPTFSLHSTLFNGSTSNRGIPRKSLLAGFPLPHSKSSFLLTQTTISLNSNP 60
           MAMLCASSSTPTFSLHSTL NG+TSN+  PR SLL  FPLPHSKSSFLLTQT+ISL SN 
Sbjct: 1   MAMLCASSSTPTFSLHSTLTNGTTSNKSFPRNSLLVAFPLPHSKSSFLLTQTSISLTSNS 60

Query: 61  KSPLLQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120
           K   LQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK
Sbjct: 61  KRSALQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDL TYTPSVDMGAFVIVVNAEK+AVSG+KRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKIAVSGKKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHDAQKPVELPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPH+AQKPV+LPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]

BLAST of Lsi04G019800 vs. TrEMBL
Match: A0A0D2Q790_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G048000 PE=3 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 2.4e-92
Identity = 177/248 (71.37%), Postives = 193/248 (77.82%), Query Frame = 1


Query: 1   MAMLCASSSTPTFSLHSTLFNGSTSNRGIPRKSLLAGFPLPHSKSSFLLTQTTISLNSNP 60
           MA+LCAS+ST   S   T F          + S L  FP+        +  TT+S +   
Sbjct: 1   MAILCASTSTIFSSSERTSFGSLKKTIPSNQSSFLGFFPVAALSKPGSVLPTTLSFSKRD 60

Query: 61  KSPLLQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120
                +V  Q+L  VP  QRWMFE  E DGPDIWN TWYPKA DH+NTEK WYVVDATDK
Sbjct: 61  ----FRVCCQDLSLVPENQRWMFEESEADGPDIWNNTWYPKAKDHINTEKTWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180
           ILGRLASTIA HIRGK+LATYTPSVDMGAFVIVVNAEKVAVSG+KRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIAVHIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHDAQKPVELPIR 240
           M VETF+QLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHDAQKP+ELPIR
Sbjct: 181 MKVETFNQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHDAQKPIELPIR 240

Query: 241 DKRINKER 249
           DKR+ K+R
Sbjct: 241 DKRVQKQR 244

[Close]

BLAST of Lsi04G019800 vs. TrEMBL
Match: B9T1K1_RICCO (50S ribosomal protein L13, putative OS=Ricinus communis GN=RCOM_0216630 PE=3 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 4.1e-92
Identity = 180/250 (72.00%), Postives = 202/250 (80.80%), Query Frame = 1


Query: 1   MAMLCASSSTPTFSLHSTLFNGSTSNRGIPRKSLLAGFPLPHSKSSFLLTQTTISLNSNP 60
           MA LCA SS    S  S+    ST+ R  P  + +AG  L  SK S    +T+ S + + 
Sbjct: 1   MAFLCAPSSITLSSSSSSSSTASTTQR--PYTTFIAGSSLLKSKPS---VRTSFSASCSR 60

Query: 61  KSPLLQVRAQE--LDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDAT 120
              +L  +  +  +  VP++QRWMFE  EL+GPDIWNKTWYPKAADHVNTEKPWYVVDAT
Sbjct: 61  SFTVLSEKTDKKVVPHVPVDQRWMFEEFELNGPDIWNKTWYPKAADHVNTEKPWYVVDAT 120

Query: 121 DKILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRP 180
           DKILGRLASTIA +IRGK+LATYTPSVDMGAFVIVVNAEKVAVSG+KRTQKLYRRHSGRP
Sbjct: 121 DKILGRLASTIAIYIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRP 180

Query: 181 GGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHDAQKPVELP 240
           GGM VETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPH+AQKP+ELP
Sbjct: 181 GGMKVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPIELP 240

Query: 241 IRDKRINKER 249
           IRDKRI  ++
Sbjct: 241 IRDKRIQIQK 245

[Close]

BLAST of Lsi04G019800 vs. TrEMBL
Match: M5X202_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010274mg PE=3 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 7.0e-92
Identity = 176/246 (71.54%), Postives = 198/246 (80.49%), Query Frame = 1


Query: 5   CASSSTPTFSLHSTLFNGSTSNRGIPRKSLLAGFPLPHSKSSFLLTQTTISLN--SNPKS 64
           C+SS+ P FS        S+S   I  K+   G      +  +L T T +  +  SNP+ 
Sbjct: 21  CSSSTKPPFS--------SSSKNVI--KTPFVGLSAAPPQKLWLPTTTNLGFDNGSNPRR 80

Query: 65  PLLQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDKIL 124
                  +E+ RVPL+QRWMFE DE+ GPDIWN TWYPKAADHVNTEKPWY+VDATDKIL
Sbjct: 81  SFEVFSTKEIARVPLDQRWMFEDDEVGGPDIWNNTWYPKAADHVNTEKPWYIVDATDKIL 140

Query: 125 GRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMT 184
           GR+ASTIA +IRGK+LATYTPSVDMGAFVIVVNAEKVAVSG+KRTQKLYRRHSGRPGGMT
Sbjct: 141 GRMASTIAIYIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMT 200

Query: 185 VETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHDAQKPVELPIRDK 244
           VETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPH+AQKPVELPI+DK
Sbjct: 201 VETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIKDK 256

Query: 245 RINKER 249
           RI  ++
Sbjct: 261 RIQIQK 256

[Close]

BLAST of Lsi04G019800 vs. TrEMBL
Match: M1AA76_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400007062 PE=3 SV=1)

HSP 1 Score: 343.6 bits (880), Expect = 2.0e-91
Identity = 179/249 (71.89%), Postives = 201/249 (80.72%), Query Frame = 1


Query: 1   MAMLCASSSTPTFSLHSTLFNGSTSNRGIPRKSLLAGFPLPHSKSSFLLTQTTISLNSNP 60
           MA+ C+SSS   F+ HS     S+S    P K+L  GF +  SK S ++ +T  +     
Sbjct: 1   MAVQCSSSSV-IFASHSPAKTFSSS----PNKTLFLGFSIS-SKPSIVVAKTHRAT---- 60

Query: 61  KSPLLQVRAQELDR-VPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATD 120
                Q+  QE    VPLEQRWMFE  E++GPDIWN+TWYPK ADHVNT+KPWY+VDATD
Sbjct: 61  -----QICCQEKTALVPLEQRWMFEDSEINGPDIWNETWYPKGADHVNTDKPWYIVDATD 120

Query: 121 KILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPG 180
           KILGRLASTIA HIRGK+LATYTPSVDMGAFVIVVNAEKVAVSG+KR QKLYRRHSGRPG
Sbjct: 121 KILGRLASTIAIHIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHSGRPG 180

Query: 181 GMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHDAQKPVELPI 240
           GMTVETFDQLQQRIPERI+EHAVRGMLPKGRLGR LFNHLKVY+GPDHPHDAQKP+ELPI
Sbjct: 181 GMTVETFDQLQQRIPERILEHAVRGMLPKGRLGRQLFNHLKVYEGPDHPHDAQKPIELPI 234

Query: 241 RDKRINKER 249
           RDKRI K+R
Sbjct: 241 RDKRIQKQR 234

[Close]

BLAST of Lsi04G019800 vs. TAIR10
Match: AT1G78630.1 (AT1G78630.1 Ribosomal protein L13 family protein)

HSP 1 Score: 334.0 bits (855), Expect = 8.1e-92
Identity = 171/253 (67.59%), Postives = 198/253 (78.26%), Query Frame = 1


Query: 1   MAMLCASSSTPTFSLHSTLFNGSTSNRGIPRKSLLAGFPLPHSKSSFLLTQTTISLNSNP 60
           MA+LC+SS+         L + S  + G  RKS   GF L    ++       + + +N 
Sbjct: 1   MAVLCSSSTV-------ILSSSSVKSSGSERKSPFLGFSL----TAISKPSVRVGIYANS 60

Query: 61  KSPLLQVRAQE-----LDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVV 120
           K  L QV+ +         VP  QRWMF+ +E +GPDIWN TWYPKA+DHVNT+KPW+VV
Sbjct: 61  KRGL-QVKCEAEPTTTTSLVPANQRWMFDEEEANGPDIWNTTWYPKASDHVNTDKPWFVV 120

Query: 121 DATDKILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHS 180
           DATDKILGRLASTIANHIRGK+LA+YTPSVDMGAFVIVVNAEKVAVSG+KR QKLYRRHS
Sbjct: 121 DATDKILGRLASTIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHS 180

Query: 181 GRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHDAQKPV 240
           GRPGGMTVETFDQLQQRIPERI+EHAVRGMLPKGRLGRALFNHLKVYKGPDHPH+AQKP+
Sbjct: 181 GRPGGMTVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPL 240

Query: 241 ELPIRDKRINKER 249
           +LPIRDKRI  ++
Sbjct: 241 DLPIRDKRIQLQK 241

[Close]

BLAST of Lsi04G019800 vs. TAIR10
Match: AT3G01790.1 (AT3G01790.1 Ribosomal protein L13 family protein)

HSP 1 Score: 87.8 bits (216), Expect = 1.0e-17
Identity = 47/125 (37.60%), Postives = 69/125 (55.20%), Query Frame = 1


Query: 112 WYVVDATDKILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLY 171
           W V DA  ++LGRLAS I+  ++ KD  TY P+ D G   IV+NA+++  +GRK T K Y
Sbjct: 32  WRVFDARGQVLGRLASQISTVLQAKDKPTYCPNRDDGDICIVLNAKEIGFTGRKLTDKFY 91

Query: 172 RRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHDA 231
           R H+G  G +   +      + P  +I  AV  MLP   L       L++++G +HP   
Sbjct: 92  RWHTGYIGHLKERSLKDQMAKDPTEVIRKAVWRMLPSNNLRDDRDRKLRIFEGGEHPF-G 151

Query: 232 QKPVE 237
            KP+E
Sbjct: 152 DKPLE 155

[Close]

BLAST of Lsi04G019800 vs. NCBI nr
Match: gi|449456559|ref|XP_004146016.1| (PREDICTED: 50S ribosomal protein L13, chloroplastic [Cucumis sativus])

HSP 1 Score: 468.4 bits (1204), Expect = 7.8e-129
Identity = 229/248 (92.34%), Postives = 236/248 (95.16%), Query Frame = 1


Query: 1   MAMLCASSSTPTFSLHSTLFNGSTSNRGIPRKSLLAGFPLPHSKSSFLLTQTTISLNSNP 60
           MAMLCASSSTPTFSLHSTL NG+TSN+  PR SLL  FPLPHSKSSFLLTQT+ISL SN 
Sbjct: 1   MAMLCASSSTPTFSLHSTLTNGTTSNKSFPRNSLLVAFPLPHSKSSFLLTQTSISLTSNS 60

Query: 61  KSPLLQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120
           K   LQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK
Sbjct: 61  KRSALQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDL TYTPSVDMGAFVIVVNAEK+AVSG+KRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKIAVSGKKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHDAQKPVELPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPH+AQKPV+LPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]

BLAST of Lsi04G019800 vs. NCBI nr
Match: gi|659127588|ref|XP_008463780.1| (PREDICTED: 50S ribosomal protein L13, chloroplastic [Cucumis melo])

HSP 1 Score: 466.8 bits (1200), Expect = 2.3e-128
Identity = 230/248 (92.74%), Postives = 235/248 (94.76%), Query Frame = 1


Query: 1   MAMLCASSSTPTFSLHSTLFNGSTSNRGIPRKSLLAGFPLPHSKSSFLLTQTTISLNSNP 60
           MAMLCASSSTPTFSLHS+L NG+TSNR IP  SLL  FPLPHSKSSFLLTQTTI L SN 
Sbjct: 1   MAMLCASSSTPTFSLHSSLTNGTTSNRSIPTNSLLVAFPLPHSKSSFLLTQTTIPLTSNS 60

Query: 61  KSPLLQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120
           K   L+VRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK
Sbjct: 61  KRSALRVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDL TYTPSVDMGAFVIVVNAEKVAVSG+KRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHDAQKPVELPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPH+AQKPVELPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]

BLAST of Lsi04G019800 vs. NCBI nr
Match: gi|645239868|ref|XP_008226334.1| (PREDICTED: 50S ribosomal protein L13, chloroplastic [Prunus mume])

HSP 1 Score: 350.5 bits (898), Expect = 2.4e-93
Identity = 178/246 (72.36%), Postives = 201/246 (81.71%), Query Frame = 1


Query: 5   CASSSTPTFSLHSTLFNGSTSNRGIPRKSLLAGFPLPHSKSSFLLTQTTISLN--SNPKS 64
           C+SS+ P FS        S+S   I  K+   G  +   +  +L T T +  +  SNP+ 
Sbjct: 21  CSSSTKPPFS--------SSSKNVI--KAPFVGLSVAPPQKLWLPTTTNLGFDNGSNPRR 80

Query: 65  PLLQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDKIL 124
                  +E+ RVPL+QRWMFE DE+DGPDIWNKTWYPKAADHVNTEKPWY+VDATDKIL
Sbjct: 81  SFEVFSTKEIARVPLDQRWMFEDDEVDGPDIWNKTWYPKAADHVNTEKPWYIVDATDKIL 140

Query: 125 GRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMT 184
           GR+ASTIA +IRGK+LATYTPSVDMGAFVIVVNAEKVAVSG+KRTQKLYRRHSGRPGGMT
Sbjct: 141 GRMASTIAIYIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMT 200

Query: 185 VETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHDAQKPVELPIRDK 244
           VETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPH+AQKPVELPI+DK
Sbjct: 201 VETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIKDK 256

Query: 245 RINKER 249
           RI  ++
Sbjct: 261 RIQIQK 256

[Close]

BLAST of Lsi04G019800 vs. NCBI nr
Match: gi|823130882|ref|XP_012455255.1| (PREDICTED: 50S ribosomal protein L13, chloroplastic isoform X1 [Gossypium raimondii])

HSP 1 Score: 346.7 bits (888), Expect = 3.4e-92
Identity = 177/248 (71.37%), Postives = 193/248 (77.82%), Query Frame = 1


Query: 1   MAMLCASSSTPTFSLHSTLFNGSTSNRGIPRKSLLAGFPLPHSKSSFLLTQTTISLNSNP 60
           MA+LCAS+ST   S   T F          + S L  FP+        +  TT+S +   
Sbjct: 1   MAILCASTSTIFSSSERTSFGSLKKTIPSNQSSFLGFFPVAALSKPGSVLPTTLSFSKRD 60

Query: 61  KSPLLQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120
                +V  Q+L  VP  QRWMFE  E DGPDIWN TWYPKA DH+NTEK WYVVDATDK
Sbjct: 61  ----FRVCCQDLSLVPENQRWMFEESEADGPDIWNNTWYPKAKDHINTEKTWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180
           ILGRLASTIA HIRGK+LATYTPSVDMGAFVIVVNAEKVAVSG+KRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIAVHIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHDAQKPVELPIR 240
           M VETF+QLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHDAQKP+ELPIR
Sbjct: 181 MKVETFNQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHDAQKPIELPIR 240

Query: 241 DKRINKER 249
           DKR+ K+R
Sbjct: 241 DKRVQKQR 244

[Close]

BLAST of Lsi04G019800 vs. NCBI nr
Match: gi|255582683|ref|XP_002532120.1| (PREDICTED: 50S ribosomal protein L13, chloroplastic [Ricinus communis])

HSP 1 Score: 345.9 bits (886), Expect = 5.9e-92
Identity = 180/250 (72.00%), Postives = 202/250 (80.80%), Query Frame = 1


Query: 1   MAMLCASSSTPTFSLHSTLFNGSTSNRGIPRKSLLAGFPLPHSKSSFLLTQTTISLNSNP 60
           MA LCA SS    S  S+    ST+ R  P  + +AG  L  SK S    +T+ S + + 
Sbjct: 1   MAFLCAPSSITLSSSSSSSSTASTTQR--PYTTFIAGSSLLKSKPS---VRTSFSASCSR 60

Query: 61  KSPLLQVRAQE--LDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDAT 120
              +L  +  +  +  VP++QRWMFE  EL+GPDIWNKTWYPKAADHVNTEKPWYVVDAT
Sbjct: 61  SFTVLSEKTDKKVVPHVPVDQRWMFEEFELNGPDIWNKTWYPKAADHVNTEKPWYVVDAT 120

Query: 121 DKILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRP 180
           DKILGRLASTIA +IRGK+LATYTPSVDMGAFVIVVNAEKVAVSG+KRTQKLYRRHSGRP
Sbjct: 121 DKILGRLASTIAIYIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRP 180

Query: 181 GGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHDAQKPVELP 240
           GGM VETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPH+AQKP+ELP
Sbjct: 181 GGMKVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPIELP 240

Query: 241 IRDKRINKER 249
           IRDKRI  ++
Sbjct: 241 IRDKRIQIQK 245

The following BLAST results are available for this feature:

BLAST of Lsi04G019800 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RK13_ARATH	1.4e-90	67.59	50S ribosomal protein L13, chloroplastic OS=Arabidopsis thaliana GN=RPL13 PE=2 S...	[more]
RK13_SPIOL	4.7e-81	62.40	50S ribosomal protein L13, chloroplastic OS=Spinacia oleracea GN=RPL13 PE=1 SV=1	[more]
RL13_ANAVT	6.5e-51	69.66	50S ribosomal protein L13 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) ...	[more]
RL13_NOSS1	1.9e-50	68.97	50S ribosomal protein L13 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rplM PE...	[more]
RL13_CYAP4	4.7e-49	66.44	50S ribosomal protein L13 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rp...	[more]

BLAST of Lsi04G019800 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZG1_CUCSA	5.5e-129	92.34	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G623380 PE=3 SV=1	[more]
A0A0D2Q790_GOSRA	2.4e-92	71.37	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G048000 PE=3 SV=1	[more]
B9T1K1_RICCO	4.1e-92	72.00	50S ribosomal protein L13, putative OS=Ricinus communis GN=RCOM_0216630 PE=3 SV=...	[more]
M5X202_PRUPE	7.0e-92	71.54	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010274mg PE=3 SV=1	[more]
M1AA76_SOLTU	2.0e-91	71.89	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400007062 PE=3 SV=1	[more]

BLAST of Lsi04G019800 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G78630.1	8.1e-92	67.59	Ribosomal protein L13 family protein	[more]
AT3G01790.1	1.0e-17	37.60	Ribosomal protein L13 family protein	[more]

BLAST of Lsi04G019800 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449456559\|ref\|XP_004146016.1\|	7.8e-129	92.34	PREDICTED: 50S ribosomal protein L13, chloroplastic [Cucumis sativus]	[more]
gi\|659127588\|ref\|XP_008463780.1\|	2.3e-128	92.74	PREDICTED: 50S ribosomal protein L13, chloroplastic [Cucumis melo]	[more]
gi\|645239868\|ref\|XP_008226334.1\|	2.4e-93	72.36	PREDICTED: 50S ribosomal protein L13, chloroplastic [Prunus mume]	[more]
gi\|823130882\|ref\|XP_012455255.1\|	3.4e-92	71.37	PREDICTED: 50S ribosomal protein L13, chloroplastic isoform X1 [Gossypium raimon...	[more]
gi\|255582683\|ref\|XP_002532120.1\|	5.9e-92	72.00	PREDICTED: 50S ribosomal protein L13, chloroplastic [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR023563	Ribosomal_L13_CS
IPR005823	Ribosomal_L13_bac-type
IPR005822	Ribosomal_L13

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009735	response to cytokinin
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0045036	protein targeting to chloroplast
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0009579	thylakoid
cellular_component	GO:0005840	ribosome
cellular_component	GO:0043229	intracellular organelle
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G019800.1	Lsi04G019800.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005822	Ribosomal protein L13	GENE3D	G3DSA:3.90.1180.10		coord: 106..238 score: 1.5
IPR005822	Ribosomal protein L13	HAMAP	MF_01366	Ribosomal_L13	coord: 112..238 score: 26
IPR005822	Ribosomal protein L13	PANTHER	PTHR11545	RIBOSOMAL PROTEIN L13	coord: 95..248 score: 8.3E
IPR005822	Ribosomal protein L13	PFAM	PF00572	Ribosomal_L13	coord: 112..234 score: 4.7
IPR005822	Ribosomal protein L13	unknown	SSF52161	Ribosomal protein L13	coord: 106..240 score: 4.97
IPR005823	Ribosomal protein L13, bacterial-type	TIGRFAMs	TIGR01066	TIGR01066	coord: 106..237 score: 1.0
IPR023563	Ribosomal protein L13, conserved site	PROSITE	PS00783	RIBOSOMAL_L13	coord: 202..224 scor
None	No IPR available	PANTHER	PTHR11545:SF7	50S RIBOSOMAL PROTEIN L13, CHLOROPLASTIC	coord: 95..248 score: 8.3E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi04G019800	Csa4G623380	Cucumber (Chinese Long) v2	culsiB283
Lsi04G019800	CSPI04G22520	Wild cucumber (PI 183967)	cpilsiB283
Lsi04G019800	Cucsa.057950	Cucumber (Gy14) v1	cgylsiB047
Lsi04G019800	CmaCh09G006770	Cucurbita maxima (Rimu)	cmalsiB025
Lsi04G019800	CmaCh01G012680	Cucurbita maxima (Rimu)	cmalsiB432
Lsi04G019800	CmoCh01G013220	Cucurbita moschata (Rifu)	cmolsiB421
Lsi04G019800	CmoCh09G006570	Cucurbita moschata (Rifu)	cmolsiB013
Lsi04G019800	Cla023307	Watermelon (97103) v1	lsiwmB333
Lsi04G019800	MELO3C025669	Melon (DHL92) v3.5.1	lsimeB315
Lsi04G019800	ClCG11G017210	Watermelon (Charleston Gray)	lsiwcgB259
Lsi04G019800	MELO3C025669.2	Melon (DHL92) v3.6.1	lsimedB331
Lsi04G019800	Cla97C11G223270	Watermelon (97103) v2	lsiwmbB266
Lsi04G019800	Bhi09G002906	Wax gourd	lsiwgoB402
Lsi04G019800	Cp4.1LG06g05300	Cucurbita pepo (Zucchini)	cpelsiB639
Lsi04G019800	Cp4.1LG02g02180	Cucurbita pepo (Zucchini)	cpelsiB456
Lsi04G019800	CsGy4G021030	Cucumber (Gy14) v2	cgyblsiB263
Lsi04G019800	Carg14749	Silver-seed gourd	carlsiB286
Lsi04G019800	Carg03079	Silver-seed gourd	carlsiB577
Lsi04G019800	CsaV3_4G032830	Cucumber (Chinese Long) v3	cuclsiB304

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi04G019800	Cucumber (Chinese Long) v2	culsiB290
Lsi04G019800	Wild cucumber (PI 183967)	cpilsiB290