MELO3C025669 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C025669
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	50S ribosomal protein L13, putative
Location	chr7 : 4319660 .. 4323194 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATAGTCCCAATGTAGAAGAGAAGTAGTGTTGCGCAAATTTATCCACTCCCCCCGGTTTCCCATTTCTCATCTCCGTATTCACAAAGCCTAGAAAGAGTCTTATCCACAATCCATAGCACCAATTCCCCAACTGAAAGAGCCACTGCCAGAGCTACAATGGCGATGCTCTGTGCTTCCTCCTCTACACCCACTTTCTCTTTACATTCCTCTCTCACCAATGGAACCACAAGTAACAGAAGCATTCCCACAAACTCACTCCTTGTTGCCTTTCCACTCCCACATTCAAAATCTTCTTTTCTTCTAACCCAGACCACCATTCCTCTAACCTCCAACTCCAAGAGGTCGGCCCTTCGAGTGCGAGCTCAAGAGCTGGATCGTGTCCCTTTGGAACAACGGTGGATGTTCGAGGGCGACGAGCTCGACGGCCCTGTACGTCTGTAGATCATACAATATTTTTATTTGTTTGCGCTAAGTTTGGTATTGTGGGTTTGAGACTAATTGAACTCGTTCTTTGCATAAGACGTTAATGGGTTCCTATTAAACCTAAAACGCTAATGGGTTATTGTTTGTTGTTTCTTTTGGAGCTGTTACATCAAACATTTGGCTTCTCCGCATTAGCAATGTCTCTTTCCGTTGATATATTGAAGTTATTTTCACAGAAACTATCAACAAAAAAACTGGTTACAAGTATAATTGTTCTTATGACTGAACATACAAACCTCTTTCTGATTGTTAGGCCTATTTGATATGCCAATTCTCTGAATCTTGAAGAATTATTTCCTGTTTTAGCTAGCTGTTTGTTTATTTTTAATTTTCAGATTGGATTCTTAGTAGTCGTTATTCTTTTCCATTCAGGATATATGGAATAAAACGTGGTACCCGAAGGCTGCAGATCATGTGAACACAGAAAAACCTTGGTATGTGGTTGATGCCACTGATAAGATTTTGGGAAGACTAGCTTCGACCATTGCCAATCATATCCGAGGGAAGGATTTGCCAACCTATACTCCTAGTGTGGATATGGGGGCTTTTGTGATTGTGGTATGTGGCTGTACTTGTACATAATGTTTTAGCTACAATCACTACAGCATTGATTGCACTTTTATCTACTCAACTTGAACTTTCTTGCTATTTGTTTTCATTTAGTTGCTTATTCATTATAACCCATGAATTATACTTAGGTAAATGCAGAAAAAGTTGCGGTGTCTGGTAAAAAGAGGACTCAGAAACTATACAGGAGGCATTCAGGGCGACCGGGTGGTATGACTGTAGAAACTTTTGACCAGCTACAGCAGAGAATTCCTGAAAGAATTATCGAGCATGCTGTTCGTGGTATGCTTCCAAAAGGGAGGGTAAGTGGTTCCTTCTACTCAAGTGCCATATTGATATGCACGCAGACTGCAAACTGAATATTTGTGGGTGATAAGTGATTGTTTAAGTTTAAAGTGACACTCCATTTAGGAAAATTGCGTCAAAAGATTATGCGGAAAGTATATTTTCTGCTCCATTTGGTTGATCAGTTTTGTTAGAAGATTTAGTTAGTTCCTTCTATCCGGTCTGGTCTCGATCAAGGATCTCCGTCTTCCAGCCCTAGGATTTGAAGGGAGGTCTTGAACTCTAGGCTTTCTTTGTTGTTGGATAGGCTTTCTGTTAATTCCCCTTTCATTTAAGCTTTTTCATTGCATTGCCAAGGAGGCTTCTTCTTCTTTCTTTTACGACGAATCCGGCAAGCTAAAATCCTTTCTTCTCTGATTGCTTGAATACAAAAGTTCAGGAATTCAGAAATTCAGAAATCCAAAAGTTGGAAAGGTTGGGTTGGTCTTATGAAGTGAGGATGCAATCCTCCTAAACCTACCAGTATGGAAACACATAACCTGATGTTCGGTTAAGATAGCTTTTGGTGTTTTGGTTGCGGTAGTGTAGACTATTGGTTAGCTATGTTCCATCTTACAGAAGAGTTCCTCAAACTCATCACCAATGGGGTTTTACAGCTTCAAATTCAAATTTAAGTTGTTCCGATGGTTCTCACACTCTACAACATAGGATTCTAGAAGCAACGAGTTGATGTATGGCAAATAATCGTGTTTTTCAGTTCATTAGAAGAATCTCCAATTATAAGAAAATAAGATTTCTGGTGGCCTTTCAAAATCTCTTCAAGAGGATTTCAGAACTTGGATTGTAATTTGTTAGGTTAACCATGTGGAGGATGTGACAAGACCGAGTTGCTTGGGAAATTTTGAAGTGTTTGAGAACCAAACATATGGTCTTTTGCTTTATTCCTTGGCTAATCTACCGGCAATCTGTTGGTTACATTTAGTAGTAAATATCTTTGGCCCTTTAAGTCATACTGGCAAAACTAGAGTTGAAGACCTATACGGTTGATTGAGTCTGACAACTGTGTTGGATGATTTCTTGGCAATTCAGGACCAGGAAAGCTAAAAAAGTTGCTTTAGCTGTGGATTTTGAAATTTTTTGGTTGTCGTTTGAACTACAATCATTGATTTGAAAATTTCATACTTTCTATACACCTAGTATATGTATTAGGAAATCAACAATTAACAATACAAAAAACGTATAGAGATCAACATAGAGATATACGTGGTTTACTAACAATGTATTAGCTACGTCCATGGAGCAAAGGGAGAACAATTTTATTAGAGAAAATTTTTCACACAAGACGACGCCATTGGGTTAGTGACTATATATTTTACTTCTCTAAACCCTAGGTTTAGTGAGACCACCATACTAGGTTTATCTGGGTATAACCGTATAAGATAGCTTTATCTTAAGTTTCAGCTCTCCAAGAATGATGCAGCAAAATAAAATCTACGTTATGAAAAAGGAACAACTTTTCGTAAAGAAAATCAAACAGCCCTGCTTCTGCATCATCCTTTGAACAACTTCTTCGTGACAAACAGTTAGTTGTTTATGATGCGGTGTATTATGACATAGGAATTTCTCGTTGTCAGTGCTTTGACATGACGTGGATGAAACTGTTCTTTAGACTTTTTTCAAGTAGCTATGAAGTAATTGCGGTGCTTGAAATACTCATCTTACTTTTTATTTCCTGTAAACTGCTCCATATTGTGTGTATACGAGTTCCCTGTTTCCTGCCTCCATTTATGTTCCTGATAGTTTATTGGGTGTTTGAAACCATGGCAATTTATGTGCAGCTTGGAAGAGCACTCTTTAACCACTTGAAGGTTTACAAAGGACCAGACCATCCACACGAGGCACAAAAGCCAGTTGAGCTGCCAATTAGGGACAAAAGGATAAACAAAGAAAGATAGTATATGAACTACTAAGAGCAAACAATGGACGAAGAGACAACGCTCTCTTGTATGAGGTTTTCTATGTTCATATAATCGAGTTAGAGTTTCCATGCTTCAACTCAATTTGATATCAGCATTTGTTCTGTAATTTGATTTCAAATTCTAGTATCTTAATCCAAAGTTGCGTTTGCAAAGTTATTAAATCAGAAGAGGAAATCCTTAAATCTTGCCCGGTTAAAGGTTGTGATAATGGTATTTTTA

mRNA sequence

AAATAGTCCCAATGTAGAAGAGAAGTAGTGTTGCGCAAATTTATCCACTCCCCCCGGTTTCCCATTTCTCATCTCCGTATTCACAAAGCCTAGAAAGAGTCTTATCCACAATCCATAGCACCAATTCCCCAACTGAAAGAGCCACTGCCAGAGCTACAATGGCGATGCTCTGTGCTTCCTCCTCTACACCCACTTTCTCTTTACATTCCTCTCTCACCAATGGAACCACAAGTAACAGAAGCATTCCCACAAACTCACTCCTTGTTGCCTTTCCACTCCCACATTCAAAATCTTCTTTTCTTCTAACCCAGACCACCATTCCTCTAACCTCCAACTCCAAGAGGTCGGCCCTTCGAGTGCGAGCTCAAGAGCTGGATCGTGTCCCTTTGGAACAACGGTGGATGTTCGAGGGCGACGAGCTCGACGGCCCTGATATATGGAATAAAACGTGGTACCCGAAGGCTGCAGATCATGTGAACACAGAAAAACCTTGGTATGTGGTTGATGCCACTGATAAGATTTTGGGAAGACTAGCTTCGACCATTGCCAATCATATCCGAGGGAAGGATTTGCCAACCTATACTCCTAGTGTGGATATGGGGGCTTTTGTGATTGTGGTAAATGCAGAAAAAGTTGCGGTGTCTGGTAAAAAGAGGACTCAGAAACTATACAGGAGGCATTCAGGGCGACCGGGTGGTATGACTGTAGAAACTTTTGACCAGCTACAGCAGAGAATTCCTGAAAGAATTATCGAGCATGCTGTTCGTGGTATGCTTCCAAAAGGGAGGCTTGGAAGAGCACTCTTTAACCACTTGAAGGTTTACAAAGGACCAGACCATCCACACGAGGCACAAAAGCCAGTTGAGCTGCCAATTAGGGACAAAAGGATAAACAAAGAAAGATAGTATATGAACTACTAAGAGCAAACAATGGACGAAGAGACAACGCTCTCTTGTATGAGGTTTTCTATGTTCATATAATCGAGTTAGAGTTTCCATGCTTCAACTCAATTTGATATCAGCATTTGTTCTGTAATTTGATTTCAAATTCTAGTATCTTAATCCAAAGTTGCGTTTGCAAAGTTATTAAATCAGAAGAGGAAATCCTTAAATCTTGCCCGGTTAAAGGTTGTGATAATGGTATTTTTA

Coding sequence (CDS)

ATGGCGATGCTCTGTGCTTCCTCCTCTACACCCACTTTCTCTTTACATTCCTCTCTCACCAATGGAACCACAAGTAACAGAAGCATTCCCACAAACTCACTCCTTGTTGCCTTTCCACTCCCACATTCAAAATCTTCTTTTCTTCTAACCCAGACCACCATTCCTCTAACCTCCAACTCCAAGAGGTCGGCCCTTCGAGTGCGAGCTCAAGAGCTGGATCGTGTCCCTTTGGAACAACGGTGGATGTTCGAGGGCGACGAGCTCGACGGCCCTGATATATGGAATAAAACGTGGTACCCGAAGGCTGCAGATCATGTGAACACAGAAAAACCTTGGTATGTGGTTGATGCCACTGATAAGATTTTGGGAAGACTAGCTTCGACCATTGCCAATCATATCCGAGGGAAGGATTTGCCAACCTATACTCCTAGTGTGGATATGGGGGCTTTTGTGATTGTGGTAAATGCAGAAAAAGTTGCGGTGTCTGGTAAAAAGAGGACTCAGAAACTATACAGGAGGCATTCAGGGCGACCGGGTGGTATGACTGTAGAAACTTTTGACCAGCTACAGCAGAGAATTCCTGAAAGAATTATCGAGCATGCTGTTCGTGGTATGCTTCCAAAAGGGAGGCTTGGAAGAGCACTCTTTAACCACTTGAAGGTTTACAAAGGACCAGACCATCCACACGAGGCACAAAAGCCAGTTGAGCTGCCAATTAGGGACAAAAGGATAAACAAAGAAAGATAG

Protein sequence

MAMLCASSSTPTFSLHSSLTNGTTSNRSIPTNSLLVAFPLPHSKSSFLLTQTTIPLTSNSKRSALRVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER*

Homology

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BLAST of MELO3C025669 vs. Swiss-Prot
Match: RK13_ARATH (50S ribosomal protein L13, chloroplastic OS=Arabidopsis thaliana GN=RPL13 PE=2 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 6.5e-91
Identity = 173/253 (68.38%), Postives = 195/253 (77.08%), Query Frame = 1


Query: 1   MAMLCASSSTPTFSLHSSLTNGTTSNRSIPTNSLLVAFPLPHSKSSFLLTQTTIPLTSNS 60
           MA+LC+SS   T  L SS    + S R  P         L  S ++       + + +NS
Sbjct: 1   MAVLCSSS---TVILSSSSVKSSGSERKSPF--------LGFSLTAISKPSVRVGIYANS 60

Query: 61  KRSALRVRAQE-----LDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVV 120
           KR  L+V+ +         VP  QRWMF+ +E +GPDIWN TWYPKA+DHVNT+KPW+VV
Sbjct: 61  KRG-LQVKCEAEPTTTTSLVPANQRWMFDEEEANGPDIWNTTWYPKASDHVNTDKPWFVV 120

Query: 121 DATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHS 180
           DATDKILGRLASTIANHIRGK+L +YTPSVDMGAFVIVVNAEKVAVSGKKR QKLYRRHS
Sbjct: 121 DATDKILGRLASTIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHS 180

Query: 181 GRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV 240
           GRPGGMTVETFDQLQQRIPERI+EHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKP+
Sbjct: 181 GRPGGMTVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPL 240

Query: 241 ELPIRDKRINKER 249
           +LPIRDKRI  ++
Sbjct: 241 DLPIRDKRIQLQK 241

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BLAST of MELO3C025669 vs. Swiss-Prot
Match: RK13_SPIOL (50S ribosomal protein L13, chloroplastic OS=Spinacia oleracea GN=RPL13 PE=1 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 6.1e-81
Identity = 160/251 (63.75%), Postives = 185/251 (73.71%), Query Frame = 1


Query: 3   MLCASSST-PTFSLHSSL--TN-GTTSNRSIPTNSLLVAFPLPHSKSSFLLTQTTIPLTS 62
           M CASS T P+     S   TN   T   S P  ++  A  +   KS    T  +   T 
Sbjct: 4   MACASSLTFPSAQTQKSFFGTNVKQTPVLSFPRPTVAAAVAVSARKS----TSASTKCTE 63

Query: 63  NSKRSALRVRAQ-ELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDA 122
             ++    V+ +  +  VPL+QRWMF  +E  GPDIWN TWYPK+ADHV T+K WYVVDA
Sbjct: 64  EWRQLKEAVKKEFAIPHVPLDQRWMFTLEEATGPDIWNTTWYPKSADHVPTDKKWYVVDA 123

Query: 123 TDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGR 182
           TD ILGR+ASTIA HIRGK+L +YTPSVDMGAFVIVVNA+KVAVSGKKRTQKLYRRHSGR
Sbjct: 124 TDLILGRMASTIAIHIRGKNLASYTPSVDMGAFVIVVNADKVAVSGKKRTQKLYRRHSGR 183

Query: 183 PGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVEL 242
           PGG+  ETFDQLQ+RIPERIIEHAVRGMLPKGRLGR LFNHLKVYKG +HPH+AQ+P++L
Sbjct: 184 PGGLKEETFDQLQKRIPERIIEHAVRGMLPKGRLGRYLFNHLKVYKGAEHPHQAQQPIDL 243

Query: 243 PIRDKRINKER 249
           P+RDKRI  E+
Sbjct: 244 PLRDKRIRVEK 250

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BLAST of MELO3C025669 vs. Swiss-Prot
Match: RL13_CYAP4 (50S ribosomal protein L13 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplM PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 7.3e-50
Identity = 99/146 (67.81%), Postives = 112/146 (76.71%), Query Frame = 1


Query: 95  NKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVV 154
           NKT+ P      + E  WYVVDAT++ LGRLA+ IA  +RGK  P YTPS+D G FVIVV
Sbjct: 2   NKTYLPSTT---SLEPKWYVVDATEQHLGRLATQIAMILRGKTKPIYTPSMDTGDFVIVV 61

Query: 155 NAEKVAVSGKKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRA 214
           NAEKVAV+GKKRTQK+YRRHSGRPGGM  ETF +LQ R+PERIIEHAV+GMLPK  LGR 
Sbjct: 62  NAEKVAVTGKKRTQKIYRRHSGRPGGMKTETFAKLQSRLPERIIEHAVKGMLPKNTLGRN 121

Query: 215 LFNHLKVYKGPDHPHEAQKPVELPIR 241
           LF  LKVY GPDHPH+AQKP  L ++
Sbjct: 122 LFTKLKVYAGPDHPHQAQKPEVLTLK 144

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BLAST of MELO3C025669 vs. Swiss-Prot
Match: RL13_ANAVT (50S ribosomal protein L13 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplM PE=3 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.6e-49
Identity = 100/145 (68.97%), Postives = 112/145 (77.24%), Query Frame = 1


Query: 95  NKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVV 154
           +KT+ P      + E+ WYVVDATDK LGRLAS IA  +RGK+   YTP +D G FVIVV
Sbjct: 2   SKTYLPPQE---SLERDWYVVDATDKRLGRLASEIAMILRGKNKAHYTPHLDTGDFVIVV 61

Query: 155 NAEKVAVSGKKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRA 214
           NAEKVAV+GKKRTQKLYRRHSGRPGGM  ETF +LQQR+PERI+EHAV+GMLPK  LG+ 
Sbjct: 62  NAEKVAVTGKKRTQKLYRRHSGRPGGMKTETFAKLQQRLPERIVEHAVKGMLPKNSLGKQ 121

Query: 215 LFNHLKVYKGPDHPHEAQKPVELPI 240
           LF  LKVY GP HPH+AQKP EL I
Sbjct: 122 LFTKLKVYAGPTHPHDAQKPKELNI 143

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BLAST of MELO3C025669 vs. Swiss-Prot
Match: RL13_NOSS1 (50S ribosomal protein L13 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rplM PE=3 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 4.7e-49
Identity = 99/145 (68.28%), Postives = 112/145 (77.24%), Query Frame = 1


Query: 95  NKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVV 154
           +KT+ P      + E+ WYVVDATDK LGRLAS IA  +RGK+   YTP +D G FVIVV
Sbjct: 2   SKTYLPPQE---SLERDWYVVDATDKRLGRLASEIAMILRGKNKAHYTPHLDTGDFVIVV 61

Query: 155 NAEKVAVSGKKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRA 214
           NA+KVAV+GKKRTQKLYRRHSGRPGGM  ETF +LQQR+PERI+EHAV+GMLPK  LG+ 
Sbjct: 62  NAKKVAVTGKKRTQKLYRRHSGRPGGMKTETFAKLQQRLPERIVEHAVKGMLPKNSLGKQ 121

Query: 215 LFNHLKVYKGPDHPHEAQKPVELPI 240
           LF  LKVY GP HPH+AQKP EL I
Sbjct: 122 LFTKLKVYAGPTHPHDAQKPKELNI 143

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BLAST of MELO3C025669 vs. TrEMBL
Match: A0A0A0KZG1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G623380 PE=3 SV=1)

HSP 1 Score: 490.7 bits (1262), Expect = 1.0e-135
Identity = 239/248 (96.37%), Postives = 245/248 (98.79%), Query Frame = 1


Query: 1   MAMLCASSSTPTFSLHSSLTNGTTSNRSIPTNSLLVAFPLPHSKSSFLLTQTTIPLTSNS 60
           MAMLCASSSTPTFSLHS+LTNGTTSN+S P NSLLVAFPLPHSKSSFLLTQT+I LTSNS
Sbjct: 1   MAMLCASSSTPTFSLHSTLTNGTTSNKSFPRNSLLVAFPLPHSKSSFLLTQTSISLTSNS 60

Query: 61  KRSALRVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120
           KRSAL+VRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK
Sbjct: 61  KRSALQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEK+AVSGKKRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKIAVSGKKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV+LPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

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BLAST of MELO3C025669 vs. TrEMBL
Match: A0A0D2Q790_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G048000 PE=3 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 4.8e-93
Identity = 179/250 (71.60%), Postives = 201/250 (80.40%), Query Frame = 1


Query: 1   MAMLCASSSTPTFSLHSSLTNGTTSNRSIPTN--SLLVAFPLPHSKSSFLLTQTTIPLTS 60
           MA+LCAS+ST   S  S  T+  +  ++IP+N  S L  FP+    ++     + +P T 
Sbjct: 1   MAILCASTSTIFSS--SERTSFGSLKKTIPSNQSSFLGFFPV----AALSKPGSVLPTTL 60

Query: 61  NSKRSALRVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDAT 120
           +  +   RV  Q+L  VP  QRWMFE  E DGPDIWN TWYPKA DH+NTEK WYVVDAT
Sbjct: 61  SFSKRDFRVCCQDLSLVPENQRWMFEESEADGPDIWNNTWYPKAKDHINTEKTWYVVDAT 120

Query: 121 DKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRP 180
           DKILGRLASTIA HIRGK+L TYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRP
Sbjct: 121 DKILGRLASTIAVHIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRP 180

Query: 181 GGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELP 240
           GGM VETF+QLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPH+AQKP+ELP
Sbjct: 181 GGMKVETFNQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHDAQKPIELP 240

Query: 241 IRDKRINKER 249
           IRDKR+ K+R
Sbjct: 241 IRDKRVQKQR 244

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BLAST of MELO3C025669 vs. TrEMBL
Match: A0A0D2U340_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G175400 PE=3 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 6.3e-93
Identity = 181/250 (72.40%), Postives = 197/250 (78.80%), Query Frame = 1


Query: 1   MAMLCASSSTPTFSLHSSLTNGTTSNRSIPTN--SLLVAFPLPHSKSSFLLTQTTIPLTS 60
           MA+LCAS+S    S  S   +  +  R+IP+N  S L  FP+           TT+   S
Sbjct: 1   MALLCASTSVIFSSSSSERPSFASLKRTIPSNQSSFLGFFPVVALSKPSSARTTTL---S 60

Query: 61  NSKRSALRVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDAT 120
            SKR   RV  Q+L  VP  QRWMFE  E DGPDIWN TWYPKA DH+NTEK WY+VDA 
Sbjct: 61  FSKRD-FRVCCQDLSLVPENQRWMFEESEADGPDIWNNTWYPKAKDHINTEKTWYIVDAA 120

Query: 121 DKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRP 180
           DKILGRLASTIA HIRGK+LPTYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRP
Sbjct: 121 DKILGRLASTIAVHIRGKNLPTYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRP 180

Query: 181 GGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELP 240
           GGM VETF+QLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKG DHPHEAQKP+ELP
Sbjct: 181 GGMKVETFNQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGADHPHEAQKPIELP 240

Query: 241 IRDKRINKER 249
           IRDKR+ K+R
Sbjct: 241 IRDKRVQKQR 246

[Close]

BLAST of MELO3C025669 vs. TrEMBL
Match: U5GW75_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s39310g PE=3 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 6.3e-93
Identity = 178/251 (70.92%), Postives = 196/251 (78.09%), Query Frame = 1


Query: 1   MAMLCASSSTPTFSLHSSLTNGTTSNRSIPTNSLLVAFPLPHSKSSFLLTQTTIPLTSNS 60
           MAMLCASSS    S   S +       SI T   +  F    SK    +  +  PL + S
Sbjct: 1   MAMLCASSSFT--STKPSCSYSARHGTSICTTPFVAGFSFSQSKLKPCVKTSLFPLNNGS 60

Query: 61  KRSALRVRAQE---LDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDA 120
           +   +R   +E   + RVPL+QRW+FE  EL+GPDIWN TWYPKAADH+NTEK WY+VDA
Sbjct: 61  RSVEVRCEKKEKNVVTRVPLDQRWLFEESELNGPDIWNTTWYPKAADHINTEKTWYIVDA 120

Query: 121 TDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGR 180
           TDKILGRLASTIA +IRGK+L TYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGR
Sbjct: 121 TDKILGRLASTIAIYIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGR 180

Query: 181 PGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVEL 240
           PGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVY GP HPHEAQKP++L
Sbjct: 181 PGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYTGPTHPHEAQKPIDL 240

Query: 241 PIRDKRINKER 249
           PIRDKRI  ER
Sbjct: 241 PIRDKRIQMER 249

[Close]

BLAST of MELO3C025669 vs. TrEMBL
Match: M5X202_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010274mg PE=3 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 1.4e-92
Identity = 178/256 (69.53%), Postives = 202/256 (78.91%), Query Frame = 1


Query: 1   MAMLCASSSTPTFSLHSSLTNGTTSNRSIPTNSL------LVAFPLPHSKSSFLLTQTTI 60
           M +L  S+S+ +F L SS T  +++     ++S        V       +  +L T T +
Sbjct: 1   MTILSLSASSSSFMLSSSSTCSSSTKPPFSSSSKNVIKTPFVGLSAAPPQKLWLPTTTNL 60

Query: 61  PLT--SNSKRSALRVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPW 120
                SN +RS      +E+ RVPL+QRWMFE DE+ GPDIWN TWYPKAADHVNTEKPW
Sbjct: 61  GFDNGSNPRRSFEVFSTKEIARVPLDQRWMFEDDEVGGPDIWNNTWYPKAADHVNTEKPW 120

Query: 121 YVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYR 180
           Y+VDATDKILGR+ASTIA +IRGK+L TYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYR
Sbjct: 121 YIVDATDKILGRMASTIAIYIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYR 180

Query: 181 RHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQ 240
           RHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQ
Sbjct: 181 RHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQ 240

Query: 241 KPVELPIRDKRINKER 249
           KPVELPI+DKRI  ++
Sbjct: 241 KPVELPIKDKRIQIQK 256

[Close]

BLAST of MELO3C025669 vs. TAIR10
Match: AT1G78630.1 (AT1G78630.1 Ribosomal protein L13 family protein)

HSP 1 Score: 335.1 bits (858), Expect = 3.7e-92
Identity = 173/253 (68.38%), Postives = 195/253 (77.08%), Query Frame = 1


Query: 1   MAMLCASSSTPTFSLHSSLTNGTTSNRSIPTNSLLVAFPLPHSKSSFLLTQTTIPLTSNS 60
           MA+LC+SS   T  L SS    + S R  P         L  S ++       + + +NS
Sbjct: 1   MAVLCSSS---TVILSSSSVKSSGSERKSPF--------LGFSLTAISKPSVRVGIYANS 60

Query: 61  KRSALRVRAQE-----LDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVV 120
           KR  L+V+ +         VP  QRWMF+ +E +GPDIWN TWYPKA+DHVNT+KPW+VV
Sbjct: 61  KRG-LQVKCEAEPTTTTSLVPANQRWMFDEEEANGPDIWNTTWYPKASDHVNTDKPWFVV 120

Query: 121 DATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHS 180
           DATDKILGRLASTIANHIRGK+L +YTPSVDMGAFVIVVNAEKVAVSGKKR QKLYRRHS
Sbjct: 121 DATDKILGRLASTIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHS 180

Query: 181 GRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV 240
           GRPGGMTVETFDQLQQRIPERI+EHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKP+
Sbjct: 181 GRPGGMTVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPL 240

Query: 241 ELPIRDKRINKER 249
           +LPIRDKRI  ++
Sbjct: 241 DLPIRDKRIQLQK 241

[Close]

BLAST of MELO3C025669 vs. TAIR10
Match: AT3G01790.1 (AT3G01790.1 Ribosomal protein L13 family protein)

HSP 1 Score: 88.6 bits (218), Expect = 6.0e-18
Identity = 47/125 (37.60%), Postives = 68/125 (54.40%), Query Frame = 1


Query: 112 WYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLY 171
           W V DA  ++LGRLAS I+  ++ KD PTY P+ D G   IV+NA+++  +G+K T K Y
Sbjct: 32  WRVFDARGQVLGRLASQISTVLQAKDKPTYCPNRDDGDICIVLNAKEIGFTGRKLTDKFY 91

Query: 172 RRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEA 231
           R H+G  G +   +      + P  +I  AV  MLP   L       L++++G +HP   
Sbjct: 92  RWHTGYIGHLKERSLKDQMAKDPTEVIRKAVWRMLPSNNLRDDRDRKLRIFEGGEHPF-G 151

Query: 232 QKPVE 237
            KP+E
Sbjct: 152 DKPLE 155

[Close]

BLAST of MELO3C025669 vs. NCBI nr
Match: gi|659127588|ref|XP_008463780.1| (PREDICTED: 50S ribosomal protein L13, chloroplastic [Cucumis melo])

HSP 1 Score: 504.6 bits (1298), Expect = 9.9e-140
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 1


Query: 1   MAMLCASSSTPTFSLHSSLTNGTTSNRSIPTNSLLVAFPLPHSKSSFLLTQTTIPLTSNS 60
           MAMLCASSSTPTFSLHSSLTNGTTSNRSIPTNSLLVAFPLPHSKSSFLLTQTTIPLTSNS
Sbjct: 1   MAMLCASSSTPTFSLHSSLTNGTTSNRSIPTNSLLVAFPLPHSKSSFLLTQTTIPLTSNS 60

Query: 61  KRSALRVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120
           KRSALRVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK
Sbjct: 61  KRSALRVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]

BLAST of MELO3C025669 vs. NCBI nr
Match: gi|449456559|ref|XP_004146016.1| (PREDICTED: 50S ribosomal protein L13, chloroplastic [Cucumis sativus])

HSP 1 Score: 490.7 bits (1262), Expect = 1.5e-135
Identity = 239/248 (96.37%), Postives = 245/248 (98.79%), Query Frame = 1


Query: 1   MAMLCASSSTPTFSLHSSLTNGTTSNRSIPTNSLLVAFPLPHSKSSFLLTQTTIPLTSNS 60
           MAMLCASSSTPTFSLHS+LTNGTTSN+S P NSLLVAFPLPHSKSSFLLTQT+I LTSNS
Sbjct: 1   MAMLCASSSTPTFSLHSTLTNGTTSNKSFPRNSLLVAFPLPHSKSSFLLTQTSISLTSNS 60

Query: 61  KRSALRVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120
           KRSAL+VRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK
Sbjct: 61  KRSALQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEK+AVSGKKRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKIAVSGKKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV+LPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]

BLAST of MELO3C025669 vs. NCBI nr
Match: gi|645239868|ref|XP_008226334.1| (PREDICTED: 50S ribosomal protein L13, chloroplastic [Prunus mume])

HSP 1 Score: 352.8 bits (904), Expect = 4.8e-94
Identity = 180/256 (70.31%), Postives = 205/256 (80.08%), Query Frame = 1


Query: 1   MAMLCASSSTPTFSLHSSLTNGTTSNRSIPTNSL------LVAFPLPHSKSSFLLTQTTI 60
           M +L  S+S+ +F L SS T  +++     ++S        V   +   +  +L T T +
Sbjct: 1   MTVLSLSASSSSFMLSSSSTCSSSTKPPFSSSSKNVIKAPFVGLSVAPPQKLWLPTTTNL 60

Query: 61  PLT--SNSKRSALRVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPW 120
                SN +RS      +E+ RVPL+QRWMFE DE+DGPDIWNKTWYPKAADHVNTEKPW
Sbjct: 61  GFDNGSNPRRSFEVFSTKEIARVPLDQRWMFEDDEVDGPDIWNKTWYPKAADHVNTEKPW 120

Query: 121 YVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYR 180
           Y+VDATDKILGR+ASTIA +IRGK+L TYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYR
Sbjct: 121 YIVDATDKILGRMASTIAIYIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYR 180

Query: 181 RHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQ 240
           RHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQ
Sbjct: 181 RHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQ 240

Query: 241 KPVELPIRDKRINKER 249
           KPVELPI+DKRI  ++
Sbjct: 241 KPVELPIKDKRIQIQK 256

[Close]

BLAST of MELO3C025669 vs. NCBI nr
Match: gi|1009162121|ref|XP_015899265.1| (PREDICTED: 50S ribosomal protein L13, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 352.4 bits (903), Expect = 6.3e-94
Identity = 181/254 (71.26%), Postives = 204/254 (80.31%), Query Frame = 1


Query: 1   MAMLCASSSTPTFSLHSSLTNGTTSNRSIPTNSLLVAFPLPHSKSSFLLTQTTI-----P 60
           MA+   S+S+ +  L SS    ++S+R +P  S L     P    S      TI     P
Sbjct: 1   MAIQIVSASSSSLVLSSS----SSSSRPLPFTSSLSNSKTPFVGFSIAPCFPTISTPRFP 60

Query: 61  LTSNSKRSALRVRA-QELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYV 120
           L  N  RS+ RV + +++  +PL+QRWMFE  E+DGPDIWNKTWYPKAADHVNT+KPW++
Sbjct: 61  LADNKGRSSFRVHSSKDIPHIPLDQRWMFEQSEVDGPDIWNKTWYPKAADHVNTDKPWFI 120

Query: 121 VDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRH 180
           VDATDKILGRLASTIA +IRGK+L TYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRH
Sbjct: 121 VDATDKILGRLASTIAIYIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRH 180

Query: 181 SGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKP 240
           SGRPGGM VETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKP
Sbjct: 181 SGRPGGMKVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKP 240

Query: 241 VELPIRDKRINKER 249
           ++LPIRDKRI KER
Sbjct: 241 IDLPIRDKRIKKER 250

[Close]

BLAST of MELO3C025669 vs. NCBI nr
Match: gi|823130882|ref|XP_012455255.1| (PREDICTED: 50S ribosomal protein L13, chloroplastic isoform X1 [Gossypium raimondii])

HSP 1 Score: 349.0 bits (894), Expect = 6.9e-93
Identity = 179/250 (71.60%), Postives = 201/250 (80.40%), Query Frame = 1


Query: 1   MAMLCASSSTPTFSLHSSLTNGTTSNRSIPTN--SLLVAFPLPHSKSSFLLTQTTIPLTS 60
           MA+LCAS+ST   S  S  T+  +  ++IP+N  S L  FP+    ++     + +P T 
Sbjct: 1   MAILCASTSTIFSS--SERTSFGSLKKTIPSNQSSFLGFFPV----AALSKPGSVLPTTL 60

Query: 61  NSKRSALRVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDAT 120
           +  +   RV  Q+L  VP  QRWMFE  E DGPDIWN TWYPKA DH+NTEK WYVVDAT
Sbjct: 61  SFSKRDFRVCCQDLSLVPENQRWMFEESEADGPDIWNNTWYPKAKDHINTEKTWYVVDAT 120

Query: 121 DKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRP 180
           DKILGRLASTIA HIRGK+L TYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRP
Sbjct: 121 DKILGRLASTIAVHIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRP 180

Query: 181 GGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELP 240
           GGM VETF+QLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPH+AQKP+ELP
Sbjct: 181 GGMKVETFNQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHDAQKPIELP 240

Query: 241 IRDKRINKER 249
           IRDKR+ K+R
Sbjct: 241 IRDKRVQKQR 244

The following BLAST results are available for this feature:

BLAST of MELO3C025669 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RK13_ARATH	6.5e-91	68.38	50S ribosomal protein L13, chloroplastic OS=Arabidopsis thaliana GN=RPL13 PE=2 S...	[more]
RK13_SPIOL	6.1e-81	63.75	50S ribosomal protein L13, chloroplastic OS=Spinacia oleracea GN=RPL13 PE=1 SV=1	[more]
RL13_CYAP4	7.3e-50	67.81	50S ribosomal protein L13 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rp...	[more]
RL13_ANAVT	1.6e-49	68.97	50S ribosomal protein L13 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) ...	[more]
RL13_NOSS1	4.7e-49	68.28	50S ribosomal protein L13 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rplM PE...	[more]

BLAST of MELO3C025669 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZG1_CUCSA	1.0e-135	96.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G623380 PE=3 SV=1	[more]
A0A0D2Q790_GOSRA	4.8e-93	71.60	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G048000 PE=3 SV=1	[more]
A0A0D2U340_GOSRA	6.3e-93	72.40	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G175400 PE=3 SV=1	[more]
U5GW75_POPTR	6.3e-93	70.92	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s39310g PE=3 SV=1	[more]
M5X202_PRUPE	1.4e-92	69.53	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010274mg PE=3 SV=1	[more]

BLAST of MELO3C025669 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G78630.1	3.7e-92	68.38	Ribosomal protein L13 family protein	[more]
AT3G01790.1	6.0e-18	37.60	Ribosomal protein L13 family protein	[more]

BLAST of MELO3C025669 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659127588\|ref\|XP_008463780.1\|	9.9e-140	100.00	PREDICTED: 50S ribosomal protein L13, chloroplastic [Cucumis melo]	[more]
gi\|449456559\|ref\|XP_004146016.1\|	1.5e-135	96.37	PREDICTED: 50S ribosomal protein L13, chloroplastic [Cucumis sativus]	[more]
gi\|645239868\|ref\|XP_008226334.1\|	4.8e-94	70.31	PREDICTED: 50S ribosomal protein L13, chloroplastic [Prunus mume]	[more]
gi\|1009162121\|ref\|XP_015899265.1\|	6.3e-94	71.26	PREDICTED: 50S ribosomal protein L13, chloroplastic [Ziziphus jujuba]	[more]
gi\|823130882\|ref\|XP_012455255.1\|	6.9e-93	71.60	PREDICTED: 50S ribosomal protein L13, chloroplastic isoform X1 [Gossypium raimon...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005822	Ribosomal_L13
IPR005823	Ribosomal_L13_bac-type
IPR023563	Ribosomal_L13_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009735	response to cytokinin
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0045036	protein targeting to chloroplast
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009579	thylakoid
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0043229	intracellular organelle
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003729	mRNA binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU54513	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C025669T1	MELO3C025669T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU54513	MU54513	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005822	Ribosomal protein L13	GENE3D	G3DSA:3.90.1180.10		coord: 106..238 score: 1.2
IPR005822	Ribosomal protein L13	HAMAP	MF_01366	Ribosomal_L13	coord: 112..238 score: 27
IPR005822	Ribosomal protein L13	PANTHER	PTHR11545	RIBOSOMAL PROTEIN L13	coord: 95..248 score: 5.0E
IPR005822	Ribosomal protein L13	PFAM	PF00572	Ribosomal_L13	coord: 112..234 score: 1.8
IPR005822	Ribosomal protein L13	unknown	SSF52161	Ribosomal protein L13	coord: 106..240 score: 2.75
IPR005823	Ribosomal protein L13, bacterial-type	TIGRFAMs	TIGR01066	TIGR01066	coord: 106..237 score: 1.6
IPR023563	Ribosomal protein L13, conserved site	PROSITE	PS00783	RIBOSOMAL_L13	coord: 202..224 scor
None	No IPR available	PANTHER	PTHR11545:SF7	50S RIBOSOMAL PROTEIN L13, CHLOROPLASTIC	coord: 95..248 score: 5.0E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C025669	Csa4G623380	Cucumber (Chinese Long) v2	cumeB299
MELO3C025669	Cla023307	Watermelon (97103) v1	mewmB539
MELO3C025669	ClCG11G017210	Watermelon (Charleston Gray)	mewcgB457
MELO3C025669	Cla97C11G223270	Watermelon (97103) v2	mewmbB467
MELO3C025669	Bhi09G002906	Wax gourd	mewgoB603
MELO3C025669	CSPI04G22520	Wild cucumber (PI 183967)	cpimeB293
MELO3C025669	Cucsa.057950	Cucumber (Gy14) v1	cgymeB042
MELO3C025669	CmaCh09G006770	Cucurbita maxima (Rimu)	cmameB046
MELO3C025669	CmaCh01G012680	Cucurbita maxima (Rimu)	cmameB443
MELO3C025669	CmoCh01G013220	Cucurbita moschata (Rifu)	cmomeB433
MELO3C025669	CmoCh09G006570	Cucurbita moschata (Rifu)	cmomeB035
MELO3C025669	Lsi04G019800	Bottle gourd (USVL1VR-Ls)	lsimeB315
MELO3C025669	Cp4.1LG02g02180	Cucurbita pepo (Zucchini)	cpemeB532
MELO3C025669	Cp4.1LG06g05300	Cucurbita pepo (Zucchini)	cpemeB737
MELO3C025669	CsGy4G021030	Cucumber (Gy14) v2	cgybmeB254
MELO3C025669	Carg03079	Silver-seed gourd	carmeB0635
MELO3C025669	Carg14749	Silver-seed gourd	carmeB0317
MELO3C025669	CsaV3_4G032830	Cucumber (Chinese Long) v3	cucmeB299

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None