CmoCh01G013220 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G013220
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Chloroplast 50S ribosomal protein L13
Location	Cmo_Chr01 : 10509125 .. 10511414 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCTTATCCACACTCAACAGCGGAAATTCCCCAACTGAAAGAGCGCCAGAGCTACAATGGCGATGCTCTGTGCTTCCTCCTCTACCGCCACTTTTTCTTTACATTCCACTCTTAACAATGCGAACGCAAGTAACAGAGCCATTCCTAGAATGTCACTCGTTGCTGGATTTCCTCTCCCTCAATCAAAATCTTCTTTTCTTCAAACTCAGACTACGATTACTCTAACCTCCAAGCCGAAGAGTTCTGTCTTTCAAGTGCGAGCTCAGGAGCTGGATCGCGTCCCTTTGGAGCAGCGGTGGATGTTCGAGGGCGACGAGATTGACGGCCCTGTACGTCTGTAATTCTCTCGATATGTTCGTTTGTTTGCTTGGAAATGATCTTATGGATTTGAGACTAATTGAACGTGTTCTTTTTGTTGGTTTTTTGTTCTTGTTGTTTATTTCGGAGGATGGCGGCTTTGGCTACTTCATTCAATTAGATCTAACTTTTGGCATCTCTGCATTGCAATGTAGCCTTCCATTGATGTACTGAAGTTATTCATACGAACCTTTTTTTTTTTTTTTTGCTTGTTAGGGCAATTTGATGTCCGTTCTCTGAATTTTGAAGAACTATTTCCTGATTTTGTCCGCTGTTTGTTCATTTTCCCTTTTCAAATTGGATATTTAGCAGTCGTTATTCTTTTCCGTGCAGGACATTTGGAATAAAACATGGTACCCGAAGGCTGCTGATCATGTGAACACTGAAAAACCTTGGTATGTGGTTGATGCCACTGATAAGATTTTGGGAAGATTAGCTTCAACCATTGCCAATCATATCCGAGGGAAGGATTTGCCAACCTACACTCCTAGTGTGGATATGGGGGCTTTTGTGATTGTGGTATGTGGTTGTACTTGTACCTAATGTTCTATTGTGGCTGCAATTTCTACAACATTGATTGTGAGCTATGCATATGCTTTTGTCTACTCACCTTGAACTTTCTTGCTATTTGTTTTCAAATGGTTGCTTGAATTCGTATCTATTCTCTTGATCCTACCTAGGTAAATGCAGAAAAAGTTGCCGTGTCTGGTAGAAAGAGGACACAAAAACTGTACAGGAGGCATTCGGGGCGACCGGGTGGCATGACAGTAGAAACTTTTGACCAGCTACAGCAGAGAATTCCTGAAAGAATTATTGAGCATGCTGTTCGCGGTATGCTTCCGAAGGGGAGGGTAAGTGATTCCTACTACTCAAGTGCTATATGTATTATGTATACGCCGACTATTCAGCAAACTGTATGTGAGATCCCACATTGGTTGGAGAGAGGAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAGACACATTTTAGTCTAAAGAGGACAATATCTGCTAGCAGTGGGCTTGAGCTGTTACAAATGGTATCAAAGCCCGTCACGACGGTACGAGGCATTGGTTGGAGTAAGACTATACATTTTCCATAGTAGATGCGTTTAAAAACCTTGAGGGGAAGCCTGAAAGGGAAAACCCAAAGAGAACAATATCTGCTAACGGTGGGCTTGGGTTGTTACACTGTATTTGTTGGTGTAGAGTGATTGCTCGAGCCACACTTCATGTAGGAAAATCGTGTCAGAAGATTATGCACAAAGTATATTTTCTAGATCAATCTTGGTGTGGCTTTAGTAGGTTGGTTAAGATAGCTTTTGTTGGTTTGGTTGCTGTAGACTACTGGTTAGTTCCGCACATCTGGGTAGCATCTGCACATGTTTTCCTTTTGAATGTCTTTTATAAAAGATATTTAACAGTCCCGCTTCATCCTTTGAAAAATTCGTTGGAGACAAACCAGCAGTTTCCTGTAGACTACATCTTATTGTGGTGTTTATGAGTTTCCCCCGTTTCCTGCCTCCATTGACGTTCCTGAGATTTTATTGGCTGTTTCAAACCATGGCAATTATTTGCAGCTTGGAAGAGCACTTTTTAACCACTTGAAGGTTTACAAAGGACCAGACCATCCACATGAGGCACAAAAGCCAGTTGATCTGCCAATTAGGGACAAAAGGATAAACAAGGAAAGATAGTATGAACTACAAAGAAACAAAGCTTTCTTGCTCTAGGATTCCAATGTTCATAGACTCTGAGTTAGAGTTTTCATGCTTCAGCCCAGTCTGATGTTAGTATTTGAGTTGTAATTTCATTCCAAGTTCTAGTCTTCTCTCGGGTAACATGATGCTTGGCCTGAGTGGCATTTGAAAATTATTTATTCACAAAGTGGAAATCTTTAAATCTCGTCTCGTTGAAGGTTGT

mRNA sequence

GTCTTATCCACACTCAACAGCGGAAATTCCCCAACTGAAAGAGCGCCAGAGCTACAATGGCGATGCTCTGTGCTTCCTCCTCTACCGCCACTTTTTCTTTACATTCCACTCTTAACAATGCGAACGCAAGTAACAGAGCCATTCCTAGAATGTCACTCGTTGCTGGATTTCCTCTCCCTCAATCAAAATCTTCTTTTCTTCAAACTCAGACTACGATTACTCTAACCTCCAAGCCGAAGAGTTCTGTCTTTCAAGTGCGAGCTCAGGAGCTGGATCGCGTCCCTTTGGAGCAGCGGTGGATGTTCGAGGGCGACGAGATTGACGGCCCTGACATTTGGAATAAAACATGGTACCCGAAGGCTGCTGATCATGTGAACACTGAAAAACCTTGGTATGTGGTTGATGCCACTGATAAGATTTTGGGAAGATTAGCTTCAACCATTGCCAATCATATCCGAGGGAAGGATTTGCCAACCTACACTCCTAGTGTGGATATGGGGGCTTTTGTGATTGTGGTAAATGCAGAAAAAGTTGCCGTGTCTGGTAGAAAGAGGACACAAAAACTGTACAGGAGGCATTCGGGGCGACCGGGTGGCATGACAGTAGAAACTTTTGACCAGCTACAGCAGAGAATTCCTGAAAGAATTATTGAGCATGCTGTTCGCGGTATGCTTCCGAAGGGGAGGCTTGGAAGAGCACTTTTTAACCACTTGAAGGTTTACAAAGGACCAGACCATCCACATGAGGCACAAAAGCCAGTTGATCTGCCAATTAGGGACAAAAGGATAAACAAGGAAAGATAGTATGAACTACAAAGAAACAAAGCTTTCTTGCTCTAGGATTCCAATGTTCATAGACTCTGAGTTAGAGTTTTCATGCTTCAGCCCAGTCTGATGTTAGTATTTGAGTTGTAATTTCATTCCAAGTTCTAGTCTTCTCTCGGGTAACATGATGCTTGGCCTGAGTGGCATTTGAAAATTATTTATTCACAAAGTGGAAATCTTTAAATCTCGTCTCGTTGAAGGTTGT

Coding sequence (CDS)

ATGGCGATGCTCTGTGCTTCCTCCTCTACCGCCACTTTTTCTTTACATTCCACTCTTAACAATGCGAACGCAAGTAACAGAGCCATTCCTAGAATGTCACTCGTTGCTGGATTTCCTCTCCCTCAATCAAAATCTTCTTTTCTTCAAACTCAGACTACGATTACTCTAACCTCCAAGCCGAAGAGTTCTGTCTTTCAAGTGCGAGCTCAGGAGCTGGATCGCGTCCCTTTGGAGCAGCGGTGGATGTTCGAGGGCGACGAGATTGACGGCCCTGACATTTGGAATAAAACATGGTACCCGAAGGCTGCTGATCATGTGAACACTGAAAAACCTTGGTATGTGGTTGATGCCACTGATAAGATTTTGGGAAGATTAGCTTCAACCATTGCCAATCATATCCGAGGGAAGGATTTGCCAACCTACACTCCTAGTGTGGATATGGGGGCTTTTGTGATTGTGGTAAATGCAGAAAAAGTTGCCGTGTCTGGTAGAAAGAGGACACAAAAACTGTACAGGAGGCATTCGGGGCGACCGGGTGGCATGACAGTAGAAACTTTTGACCAGCTACAGCAGAGAATTCCTGAAAGAATTATTGAGCATGCTGTTCGCGGTATGCTTCCGAAGGGGAGGCTTGGAAGAGCACTTTTTAACCACTTGAAGGTTTACAAAGGACCAGACCATCCACATGAGGCACAAAAGCCAGTTGATCTGCCAATTAGGGACAAAAGGATAAACAAGGAAAGATAG

Homology

[Close]

BLAST of CmoCh01G013220 vs. Swiss-Prot
Match: RK13_ARATH (50S ribosomal protein L13, chloroplastic OS=Arabidopsis thaliana GN=RPL13 PE=2 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 3.9e-88
Identity = 167/253 (66.01%), Postives = 197/253 (77.87%), Query Frame = 1


Query: 1   MAMLCASSSTATFSLHSTLNNANASNRAIPRMSLVAGFPLPQSKSSFLQTQTTITLTSKP 60
           MA+LC+SS+         L++++  +    R S   GF L    ++  +    + + +  
Sbjct: 1   MAVLCSSSTVI-------LSSSSVKSSGSERKSPFLGFSL----TAISKPSVRVGIYANS 60

Query: 61  KSSVFQVRAQE-----LDRVPLEQRWMFEGDEIDGPDIWNKTWYPKAADHVNTEKPWYVV 120
           K  + QV+ +         VP  QRWMF+ +E +GPDIWN TWYPKA+DHVNT+KPW+VV
Sbjct: 61  KRGL-QVKCEAEPTTTTSLVPANQRWMFDEEEANGPDIWNTTWYPKASDHVNTDKPWFVV 120

Query: 121 DATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHS 180
           DATDKILGRLASTIANHIRGK+L +YTPSVDMGAFVIVVNAEKVAVSG+KR QKLYRRHS
Sbjct: 121 DATDKILGRLASTIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHS 180

Query: 181 GRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV 240
           GRPGGMTVETFDQLQQRIPERI+EHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKP+
Sbjct: 181 GRPGGMTVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPL 240

Query: 241 DLPIRDKRINKER 249
           DLPIRDKRI  ++
Sbjct: 241 DLPIRDKRIQLQK 241

[Close]

BLAST of CmoCh01G013220 vs. Swiss-Prot
Match: RK13_SPIOL (50S ribosomal protein L13, chloroplastic OS=Spinacia oleracea GN=RPL13 PE=1 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 3.0e-80
Identity = 160/252 (63.49%), Postives = 188/252 (74.60%), Query Frame = 1


Query: 3   MLCASSSTATFSLHSTLNNANASN------RAIPRMSLVAGFPLPQSKSSFLQTQTTITL 62
           M CASS   TF    T  +   +N       + PR ++ A   +   KS+   T+ T   
Sbjct: 4   MACASS--LTFPSAQTQKSFFGTNVKQTPVLSFPRPTVAAAVAVSARKSTSASTKCTEEW 63

Query: 63  TSKPKSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNKTWYPKAADHVNTEKPWYVVD 122
               K +V +  A  +  VPL+QRWMF  +E  GPDIWN TWYPK+ADHV T+K WYVVD
Sbjct: 64  RQL-KEAVKKEFA--IPHVPLDQRWMFTLEEATGPDIWNTTWYPKSADHVPTDKKWYVVD 123

Query: 123 ATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSG 182
           ATD ILGR+ASTIA HIRGK+L +YTPSVDMGAFVIVVNA+KVAVSG+KRTQKLYRRHSG
Sbjct: 124 ATDLILGRMASTIAIHIRGKNLASYTPSVDMGAFVIVVNADKVAVSGKKRTQKLYRRHSG 183

Query: 183 RPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVD 242
           RPGG+  ETFDQLQ+RIPERIIEHAVRGMLPKGRLGR LFNHLKVYKG +HPH+AQ+P+D
Sbjct: 184 RPGGLKEETFDQLQKRIPERIIEHAVRGMLPKGRLGRYLFNHLKVYKGAEHPHQAQQPID 243

Query: 243 LPIRDKRINKER 249
           LP+RDKRI  E+
Sbjct: 244 LPLRDKRIRVEK 250

[Close]

BLAST of CmoCh01G013220 vs. Swiss-Prot
Match: RL13_CYAP4 (50S ribosomal protein L13 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplM PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 3.3e-50
Identity = 98/146 (67.12%), Postives = 114/146 (78.08%), Query Frame = 1


Query: 95  NKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVV 154
           NKT+ P      + E  WYVVDAT++ LGRLA+ IA  +RGK  P YTPS+D G FVIVV
Sbjct: 2   NKTYLPSTT---SLEPKWYVVDATEQHLGRLATQIAMILRGKTKPIYTPSMDTGDFVIVV 61

Query: 155 NAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRA 214
           NAEKVAV+G+KRTQK+YRRHSGRPGGM  ETF +LQ R+PERIIEHAV+GMLPK  LGR 
Sbjct: 62  NAEKVAVTGKKRTQKIYRRHSGRPGGMKTETFAKLQSRLPERIIEHAVKGMLPKNTLGRN 121

Query: 215 LFNHLKVYKGPDHPHEAQKPVDLPIR 241
           LF  LKVY GPDHPH+AQKP  L ++
Sbjct: 122 LFTKLKVYAGPDHPHQAQKPEVLTLK 144

[Close]

BLAST of CmoCh01G013220 vs. Swiss-Prot
Match: RL13_ANAVT (50S ribosomal protein L13 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplM PE=3 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 9.5e-50
Identity = 98/145 (67.59%), Postives = 114/145 (78.62%), Query Frame = 1


Query: 95  NKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVV 154
           +KT+ P      + E+ WYVVDATDK LGRLAS IA  +RGK+   YTP +D G FVIVV
Sbjct: 2   SKTYLPPQE---SLERDWYVVDATDKRLGRLASEIAMILRGKNKAHYTPHLDTGDFVIVV 61

Query: 155 NAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRA 214
           NAEKVAV+G+KRTQKLYRRHSGRPGGM  ETF +LQQR+PERI+EHAV+GMLPK  LG+ 
Sbjct: 62  NAEKVAVTGKKRTQKLYRRHSGRPGGMKTETFAKLQQRLPERIVEHAVKGMLPKNSLGKQ 121

Query: 215 LFNHLKVYKGPDHPHEAQKPVDLPI 240
           LF  LKVY GP HPH+AQKP +L I
Sbjct: 122 LFTKLKVYAGPTHPHDAQKPKELNI 143

[Close]

BLAST of CmoCh01G013220 vs. Swiss-Prot
Match: RL13_NOSS1 (50S ribosomal protein L13 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rplM PE=3 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 2.8e-49
Identity = 97/145 (66.90%), Postives = 114/145 (78.62%), Query Frame = 1


Query: 95  NKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVV 154
           +KT+ P      + E+ WYVVDATDK LGRLAS IA  +RGK+   YTP +D G FVIVV
Sbjct: 2   SKTYLPPQE---SLERDWYVVDATDKRLGRLASEIAMILRGKNKAHYTPHLDTGDFVIVV 61

Query: 155 NAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRA 214
           NA+KVAV+G+KRTQKLYRRHSGRPGGM  ETF +LQQR+PERI+EHAV+GMLPK  LG+ 
Sbjct: 62  NAKKVAVTGKKRTQKLYRRHSGRPGGMKTETFAKLQQRLPERIVEHAVKGMLPKNSLGKQ 121

Query: 215 LFNHLKVYKGPDHPHEAQKPVDLPI 240
           LF  LKVY GP HPH+AQKP +L I
Sbjct: 122 LFTKLKVYAGPTHPHDAQKPKELNI 143

[Close]

BLAST of CmoCh01G013220 vs. TrEMBL
Match: A0A0A0KZG1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G623380 PE=3 SV=1)

HSP 1 Score: 456.8 bits (1174), Expect = 1.6e-125
Identity = 224/248 (90.32%), Postives = 232/248 (93.55%), Query Frame = 1


Query: 1   MAMLCASSSTATFSLHSTLNNANASNRAIPRMSLVAGFPLPQSKSSFLQTQTTITLTSKP 60
           MAMLCASSST TFSLHSTL N   SN++ PR SL+  FPLP SKSSFL TQT+I+LTS  
Sbjct: 1   MAMLCASSSTPTFSLHSTLTNGTTSNKSFPRNSLLVAFPLPHSKSSFLLTQTSISLTSNS 60

Query: 61  KSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120
           K S  QVRAQELDRVPLEQRWMFEGDE+DGPDIWNKTWYPKAADHVNTEKPWYVVDATDK
Sbjct: 61  KRSALQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEK+AVSG+KRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKIAVSGKKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]

BLAST of CmoCh01G013220 vs. TrEMBL
Match: B9T1K1_RICCO (50S ribosomal protein L13, putative OS=Ricinus communis GN=RCOM_0216630 PE=3 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 5.9e-91
Identity = 180/253 (71.15%), Postives = 202/253 (79.84%), Query Frame = 1


Query: 1   MAMLCASSSTATFSLHSTLNNANASNRAIPRMSLVAGFPLPQSKSSFLQTQTTITLTSKP 60
           MA LCA SS    S  S+ + A+ + R  P  + +AG  L +SK S        T  S  
Sbjct: 1   MAFLCAPSSITLSSSSSSSSTASTTQR--PYTTFIAGSSLLKSKPSVR------TSFSAS 60

Query: 61  KSSVFQVRAQELDR-----VPLEQRWMFEGDEIDGPDIWNKTWYPKAADHVNTEKPWYVV 120
            S  F V +++ D+     VP++QRWMFE  E++GPDIWNKTWYPKAADHVNTEKPWYVV
Sbjct: 61  CSRSFTVLSEKTDKKVVPHVPVDQRWMFEEFELNGPDIWNKTWYPKAADHVNTEKPWYVV 120

Query: 121 DATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHS 180
           DATDKILGRLASTIA +IRGK+L TYTPSVDMGAFVIVVNAEKVAVSG+KRTQKLYRRHS
Sbjct: 121 DATDKILGRLASTIAIYIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHS 180

Query: 181 GRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV 240
           GRPGGM VETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKP+
Sbjct: 181 GRPGGMKVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPI 240

Query: 241 DLPIRDKRINKER 249
           +LPIRDKRI  ++
Sbjct: 241 ELPIRDKRIQIQK 245

[Close]

BLAST of CmoCh01G013220 vs. TrEMBL
Match: M5X202_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010274mg PE=3 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 2.9e-90
Identity = 173/249 (69.48%), Postives = 200/249 (80.32%), Query Frame = 1


Query: 2   AMLCASSSTATFSLHSTLNNANASNRAIPRMSLVAGFPLPQSKSSFLQTQTTITLT--SK 61
           + + +SSST + S     ++++ +    P + L A  P    +  +L T T +     S 
Sbjct: 12  SFMLSSSSTCSSSTKPPFSSSSKNVIKTPFVGLSAAPP----QKLWLPTTTNLGFDNGSN 71

Query: 62  PKSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNKTWYPKAADHVNTEKPWYVVDATD 121
           P+ S      +E+ RVPL+QRWMFE DE+ GPDIWN TWYPKAADHVNTEKPWY+VDATD
Sbjct: 72  PRRSFEVFSTKEIARVPLDQRWMFEDDEVGGPDIWNNTWYPKAADHVNTEKPWYIVDATD 131

Query: 122 KILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPG 181
           KILGR+ASTIA +IRGK+L TYTPSVDMGAFVIVVNAEKVAVSG+KRTQKLYRRHSGRPG
Sbjct: 132 KILGRMASTIAIYIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPG 191

Query: 182 GMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPI 241
           GMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV+LPI
Sbjct: 192 GMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPI 251

Query: 242 RDKRINKER 249
           +DKRI  ++
Sbjct: 252 KDKRIQIQK 256

[Close]

BLAST of CmoCh01G013220 vs. TrEMBL
Match: A0A067L1A7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03565 PE=3 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 3.8e-90
Identity = 183/263 (69.58%), Postives = 203/263 (77.19%), Query Frame = 1


Query: 1   MAMLCASSSTATFSLHSTLNNANAS----------NRAIPRMSLVAGFPLPQSKSSFLQT 60
           MA+LCA S     S  S+ ++   S            AI       GF L   K   ++T
Sbjct: 1   MALLCAQSPAMLLSSASSSSSTTPSAPKSYFSCARKDAICCSPFTVGFSLV--KKPCVRT 60

Query: 61  QTTITLTSKPKSSVFQVRAQE------LDRVPLEQRWMFEGDEIDGPDIWNKTWYPKAAD 120
           +   +  S   SS F VR+Q+      + RVPL+QRWMFE +EI+GPDIWNKTWYPKAAD
Sbjct: 61  EFPFSSWS---SSNFVVRSQKKKEETAIARVPLDQRWMFEENEINGPDIWNKTWYPKAAD 120

Query: 121 HVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGR 180
           H+NT+KPWYVVDATDKILGRLASTIA +IRGK+L TYTPSVDMGAFVIVVNAEKVAVSG+
Sbjct: 121 HINTDKPWYVVDATDKILGRLASTIAIYIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGK 180

Query: 181 KRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKG 240
           KRTQKLYRRHSGRPGGM VETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKG
Sbjct: 181 KRTQKLYRRHSGRPGGMKVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKG 240

Query: 241 PDHPHEAQKPVDLPIRDKRINKE 248
           PDHPHEAQKPV+LPIRDKRI KE
Sbjct: 241 PDHPHEAQKPVELPIRDKRIQKE 258

[Close]

BLAST of CmoCh01G013220 vs. TrEMBL
Match: A0A0D2U340_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G175400 PE=3 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 5.0e-90
Identity = 177/251 (70.52%), Postives = 200/251 (79.68%), Query Frame = 1


Query: 1   MAMLCASSSTATFSLHSTLNNANASNRAIP--RMSLVAGFPLPQ-SKSSFLQTQTTITLT 60
           MA+LCAS+S    S  S   +  +  R IP  + S +  FP+   SK S  +T TT++ +
Sbjct: 1   MALLCASTSVIFSSSSSERPSFASLKRTIPSNQSSFLGFFPVVALSKPSSART-TTLSFS 60

Query: 61  SKPKSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNKTWYPKAADHVNTEKPWYVVDA 120
            +     F+V  Q+L  VP  QRWMFE  E DGPDIWN TWYPKA DH+NTEK WY+VDA
Sbjct: 61  KRD----FRVCCQDLSLVPENQRWMFEESEADGPDIWNNTWYPKAKDHINTEKTWYIVDA 120

Query: 121 TDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGR 180
            DKILGRLASTIA HIRGK+LPTYTPSVDMGAFVIVVNAEKVAVSG+KRTQKLYRRHSGR
Sbjct: 121 ADKILGRLASTIAVHIRGKNLPTYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGR 180

Query: 181 PGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDL 240
           PGGM VETF+QLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKG DHPHEAQKP++L
Sbjct: 181 PGGMKVETFNQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGADHPHEAQKPIEL 240

Query: 241 PIRDKRINKER 249
           PIRDKR+ K+R
Sbjct: 241 PIRDKRVQKQR 246

[Close]

BLAST of CmoCh01G013220 vs. TAIR10
Match: AT1G78630.1 (AT1G78630.1 Ribosomal protein L13 family protein)

HSP 1 Score: 325.9 bits (834), Expect = 2.2e-89
Identity = 167/253 (66.01%), Postives = 197/253 (77.87%), Query Frame = 1


Query: 1   MAMLCASSSTATFSLHSTLNNANASNRAIPRMSLVAGFPLPQSKSSFLQTQTTITLTSKP 60
           MA+LC+SS+         L++++  +    R S   GF L    ++  +    + + +  
Sbjct: 1   MAVLCSSSTVI-------LSSSSVKSSGSERKSPFLGFSL----TAISKPSVRVGIYANS 60

Query: 61  KSSVFQVRAQE-----LDRVPLEQRWMFEGDEIDGPDIWNKTWYPKAADHVNTEKPWYVV 120
           K  + QV+ +         VP  QRWMF+ +E +GPDIWN TWYPKA+DHVNT+KPW+VV
Sbjct: 61  KRGL-QVKCEAEPTTTTSLVPANQRWMFDEEEANGPDIWNTTWYPKASDHVNTDKPWFVV 120

Query: 121 DATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHS 180
           DATDKILGRLASTIANHIRGK+L +YTPSVDMGAFVIVVNAEKVAVSG+KR QKLYRRHS
Sbjct: 121 DATDKILGRLASTIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHS 180

Query: 181 GRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV 240
           GRPGGMTVETFDQLQQRIPERI+EHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKP+
Sbjct: 181 GRPGGMTVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPL 240

Query: 241 DLPIRDKRINKER 249
           DLPIRDKRI  ++
Sbjct: 241 DLPIRDKRIQLQK 241

[Close]

BLAST of CmoCh01G013220 vs. TAIR10
Match: AT3G01790.1 (AT3G01790.1 Ribosomal protein L13 family protein)

HSP 1 Score: 90.5 bits (223), Expect = 1.6e-18
Identity = 47/125 (37.60%), Postives = 70/125 (56.00%), Query Frame = 1


Query: 112 WYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLY 171
           W V DA  ++LGRLAS I+  ++ KD PTY P+ D G   IV+NA+++  +GRK T K Y
Sbjct: 32  WRVFDARGQVLGRLASQISTVLQAKDKPTYCPNRDDGDICIVLNAKEIGFTGRKLTDKFY 91

Query: 172 RRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEA 231
           R H+G  G +   +      + P  +I  AV  MLP   L       L++++G +HP   
Sbjct: 92  RWHTGYIGHLKERSLKDQMAKDPTEVIRKAVWRMLPSNNLRDDRDRKLRIFEGGEHPF-G 151

Query: 232 QKPVD 237
            KP++
Sbjct: 152 DKPLE 155

[Close]

BLAST of CmoCh01G013220 vs. NCBI nr
Match: gi|449456559|ref|XP_004146016.1| (PREDICTED: 50S ribosomal protein L13, chloroplastic [Cucumis sativus])

HSP 1 Score: 456.8 bits (1174), Expect = 2.4e-125
Identity = 224/248 (90.32%), Postives = 232/248 (93.55%), Query Frame = 1


Query: 1   MAMLCASSSTATFSLHSTLNNANASNRAIPRMSLVAGFPLPQSKSSFLQTQTTITLTSKP 60
           MAMLCASSST TFSLHSTL N   SN++ PR SL+  FPLP SKSSFL TQT+I+LTS  
Sbjct: 1   MAMLCASSSTPTFSLHSTLTNGTTSNKSFPRNSLLVAFPLPHSKSSFLLTQTSISLTSNS 60

Query: 61  KSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120
           K S  QVRAQELDRVPLEQRWMFEGDE+DGPDIWNKTWYPKAADHVNTEKPWYVVDATDK
Sbjct: 61  KRSALQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEK+AVSG+KRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKIAVSGKKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]

BLAST of CmoCh01G013220 vs. NCBI nr
Match: gi|659127588|ref|XP_008463780.1| (PREDICTED: 50S ribosomal protein L13, chloroplastic [Cucumis melo])

HSP 1 Score: 453.8 bits (1166), Expect = 2.0e-124
Identity = 224/248 (90.32%), Postives = 231/248 (93.15%), Query Frame = 1


Query: 1   MAMLCASSSTATFSLHSTLNNANASNRAIPRMSLVAGFPLPQSKSSFLQTQTTITLTSKP 60
           MAMLCASSST TFSLHS+L N   SNR+IP  SL+  FPLP SKSSFL TQTTI LTS  
Sbjct: 1   MAMLCASSSTPTFSLHSSLTNGTTSNRSIPTNSLLVAFPLPHSKSSFLLTQTTIPLTSNS 60

Query: 61  KSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120
           K S  +VRAQELDRVPLEQRWMFEGDE+DGPDIWNKTWYPKAADHVNTEKPWYVVDATDK
Sbjct: 61  KRSALRVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSG+KRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV+LPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]

BLAST of CmoCh01G013220 vs. NCBI nr
Match: gi|645239868|ref|XP_008226334.1| (PREDICTED: 50S ribosomal protein L13, chloroplastic [Prunus mume])

HSP 1 Score: 344.7 bits (883), Expect = 1.3e-91
Identity = 177/252 (70.24%), Postives = 205/252 (81.35%), Query Frame = 1


Query: 4   LCASSSTATFSLHSTLNNA-----NASNRAIPRMSLVAGFPLPQSKSSFLQTQTTITLT- 63
           L ASSS+   S  ST +++     ++S++ + +   V G  +   +  +L T T +    
Sbjct: 6   LSASSSSFMLSSSSTCSSSTKPPFSSSSKNVIKAPFV-GLSVAPPQKLWLPTTTNLGFDN 65

Query: 64  -SKPKSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNKTWYPKAADHVNTEKPWYVVD 123
            S P+ S      +E+ RVPL+QRWMFE DE+DGPDIWNKTWYPKAADHVNTEKPWY+VD
Sbjct: 66  GSNPRRSFEVFSTKEIARVPLDQRWMFEDDEVDGPDIWNKTWYPKAADHVNTEKPWYIVD 125

Query: 124 ATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSG 183
           ATDKILGR+ASTIA +IRGK+L TYTPSVDMGAFVIVVNAEKVAVSG+KRTQKLYRRHSG
Sbjct: 126 ATDKILGRMASTIAIYIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSG 185

Query: 184 RPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVD 243
           RPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV+
Sbjct: 186 RPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVE 245

Query: 244 LPIRDKRINKER 249
           LPI+DKRI  ++
Sbjct: 246 LPIKDKRIQIQK 256

[Close]

BLAST of CmoCh01G013220 vs. NCBI nr
Match: gi|255582683|ref|XP_002532120.1| (PREDICTED: 50S ribosomal protein L13, chloroplastic [Ricinus communis])

HSP 1 Score: 342.0 bits (876), Expect = 8.5e-91
Identity = 180/253 (71.15%), Postives = 202/253 (79.84%), Query Frame = 1


Query: 1   MAMLCASSSTATFSLHSTLNNANASNRAIPRMSLVAGFPLPQSKSSFLQTQTTITLTSKP 60
           MA LCA SS    S  S+ + A+ + R  P  + +AG  L +SK S        T  S  
Sbjct: 1   MAFLCAPSSITLSSSSSSSSTASTTQR--PYTTFIAGSSLLKSKPSVR------TSFSAS 60

Query: 61  KSSVFQVRAQELDR-----VPLEQRWMFEGDEIDGPDIWNKTWYPKAADHVNTEKPWYVV 120
            S  F V +++ D+     VP++QRWMFE  E++GPDIWNKTWYPKAADHVNTEKPWYVV
Sbjct: 61  CSRSFTVLSEKTDKKVVPHVPVDQRWMFEEFELNGPDIWNKTWYPKAADHVNTEKPWYVV 120

Query: 121 DATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHS 180
           DATDKILGRLASTIA +IRGK+L TYTPSVDMGAFVIVVNAEKVAVSG+KRTQKLYRRHS
Sbjct: 121 DATDKILGRLASTIAIYIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHS 180

Query: 181 GRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV 240
           GRPGGM VETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKP+
Sbjct: 181 GRPGGMKVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPI 240

Query: 241 DLPIRDKRINKER 249
           +LPIRDKRI  ++
Sbjct: 241 ELPIRDKRIQIQK 245

[Close]

BLAST of CmoCh01G013220 vs. NCBI nr
Match: gi|1009162121|ref|XP_015899265.1| (PREDICTED: 50S ribosomal protein L13, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 341.3 bits (874), Expect = 1.4e-90
Identity = 175/254 (68.90%), Postives = 206/254 (81.10%), Query Frame = 1


Query: 1   MAMLCASSSTATFSLHSTLNNANASNRAIPRMSLVAGFPLPQSKSSFLQTQTTITLTSKP 60
           MA+   S+S+++      L+++++S+R +P  S ++    P    S      TI+    P
Sbjct: 1   MAIQIVSASSSSL----VLSSSSSSSRPLPFTSSLSNSKTPFVGFSIAPCFPTISTPRFP 60

Query: 61  KS-----SVFQVRA-QELDRVPLEQRWMFEGDEIDGPDIWNKTWYPKAADHVNTEKPWYV 120
            +     S F+V + +++  +PL+QRWMFE  E+DGPDIWNKTWYPKAADHVNT+KPW++
Sbjct: 61  LADNKGRSSFRVHSSKDIPHIPLDQRWMFEQSEVDGPDIWNKTWYPKAADHVNTDKPWFI 120

Query: 121 VDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRH 180
           VDATDKILGRLASTIA +IRGK+L TYTPSVDMGAFVIVVNAEKVAVSG+KRTQKLYRRH
Sbjct: 121 VDATDKILGRLASTIAIYIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRH 180

Query: 181 SGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKP 240
           SGRPGGM VETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKP
Sbjct: 181 SGRPGGMKVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKP 240

Query: 241 VDLPIRDKRINKER 249
           +DLPIRDKRI KER
Sbjct: 241 IDLPIRDKRIKKER 250

The following BLAST results are available for this feature:

BLAST of CmoCh01G013220 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RK13_ARATH	3.9e-88	66.01	50S ribosomal protein L13, chloroplastic OS=Arabidopsis thaliana GN=RPL13 PE=2 S...	[more]
RK13_SPIOL	3.0e-80	63.49	50S ribosomal protein L13, chloroplastic OS=Spinacia oleracea GN=RPL13 PE=1 SV=1	[more]
RL13_CYAP4	3.3e-50	67.12	50S ribosomal protein L13 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rp...	[more]
RL13_ANAVT	9.5e-50	67.59	50S ribosomal protein L13 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) ...	[more]
RL13_NOSS1	2.8e-49	66.90	50S ribosomal protein L13 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rplM PE...	[more]

BLAST of CmoCh01G013220 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZG1_CUCSA	1.6e-125	90.32	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G623380 PE=3 SV=1	[more]
B9T1K1_RICCO	5.9e-91	71.15	50S ribosomal protein L13, putative OS=Ricinus communis GN=RCOM_0216630 PE=3 SV=...	[more]
M5X202_PRUPE	2.9e-90	69.48	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010274mg PE=3 SV=1	[more]
A0A067L1A7_JATCU	3.8e-90	69.58	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03565 PE=3 SV=1	[more]
A0A0D2U340_GOSRA	5.0e-90	70.52	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G175400 PE=3 SV=1	[more]

BLAST of CmoCh01G013220 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G78630.1	2.2e-89	66.01	Ribosomal protein L13 family protein	[more]
AT3G01790.1	1.6e-18	37.60	Ribosomal protein L13 family protein	[more]

BLAST of CmoCh01G013220 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449456559\|ref\|XP_004146016.1\|	2.4e-125	90.32	PREDICTED: 50S ribosomal protein L13, chloroplastic [Cucumis sativus]	[more]
gi\|659127588\|ref\|XP_008463780.1\|	2.0e-124	90.32	PREDICTED: 50S ribosomal protein L13, chloroplastic [Cucumis melo]	[more]
gi\|645239868\|ref\|XP_008226334.1\|	1.3e-91	70.24	PREDICTED: 50S ribosomal protein L13, chloroplastic [Prunus mume]	[more]
gi\|255582683\|ref\|XP_002532120.1\|	8.5e-91	71.15	PREDICTED: 50S ribosomal protein L13, chloroplastic [Ricinus communis]	[more]
gi\|1009162121\|ref\|XP_015899265.1\|	1.4e-90	68.90	PREDICTED: 50S ribosomal protein L13, chloroplastic [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005822	Ribosomal_L13
IPR005823	Ribosomal_L13_bac-type
IPR023563	Ribosomal_L13_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009735	response to cytokinin
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009579	thylakoid
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G013220.1	CmoCh01G013220.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005822	Ribosomal protein L13	GENE3D	G3DSA:3.90.1180.10		coord: 106..238 score: 3.4
IPR005822	Ribosomal protein L13	HAMAP	MF_01366	Ribosomal_L13	coord: 112..238 score: 27
IPR005822	Ribosomal protein L13	PANTHER	PTHR11545	RIBOSOMAL PROTEIN L13	coord: 95..248 score: 3.9E
IPR005822	Ribosomal protein L13	PFAM	PF00572	Ribosomal_L13	coord: 112..234 score: 3.8
IPR005822	Ribosomal protein L13	unknown	SSF52161	Ribosomal protein L13	coord: 106..239 score: 8.9
IPR005823	Ribosomal protein L13, bacterial-type	TIGRFAMs	TIGR01066	TIGR01066	coord: 106..237 score: 3.6
IPR023563	Ribosomal protein L13, conserved site	PROSITE	PS00783	RIBOSOMAL_L13	coord: 202..224 scor
None	No IPR available	PANTHER	PTHR11545:SF7	50S RIBOSOMAL PROTEIN L13, CHLOROPLASTIC	coord: 95..248 score: 3.9E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh01G013220	Cucsa.057950	Cucumber (Gy14) v1	cgycmoB0073
CmoCh01G013220	CmaCh09G006770	Cucurbita maxima (Rimu)	cmacmoB041
CmoCh01G013220	CmaCh01G012680	Cucurbita maxima (Rimu)	cmacmoB468
CmoCh01G013220	Cla023307	Watermelon (97103) v1	cmowmB457
CmoCh01G013220	Csa4G623380	Cucumber (Chinese Long) v2	cmocuB462
CmoCh01G013220	MELO3C025669	Melon (DHL92) v3.5.1	cmomeB433
CmoCh01G013220	ClCG11G017210	Watermelon (Charleston Gray)	cmowcgB392
CmoCh01G013220	CSPI04G22520	Wild cucumber (PI 183967)	cmocpiB466
CmoCh01G013220	Lsi04G019800	Bottle gourd (USVL1VR-Ls)	cmolsiB421
CmoCh01G013220	Cp4.1LG02g02180	Cucurbita pepo (Zucchini)	cmocpeB448
CmoCh01G013220	Cp4.1LG06g05300	Cucurbita pepo (Zucchini)	cmocpeB461
CmoCh01G013220	MELO3C025669.2	Melon (DHL92) v3.6.1	cmomedB497
CmoCh01G013220	CsaV3_4G032830	Cucumber (Chinese Long) v3	cmocucB0552
CmoCh01G013220	Cla97C11G223270	Watermelon (97103) v2	cmowmbB436
CmoCh01G013220	CsGy4G021030	Cucumber (Gy14) v2	cgybcmoB484
CmoCh01G013220	Carg03079	Silver-seed gourd	carcmoB0871
CmoCh01G013220	Carg14749	Silver-seed gourd	carcmoB0430

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh01G013220	CmoCh09G006570	Cucurbita moschata (Rifu)	cmocmoB013

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh01G013220	Wax gourd	cmowgoB0599
CmoCh01G013220	Cucurbita moschata (Rifu)	cmocmoB330
CmoCh01G013220	Melon (DHL92) v3.5.1	cmomeB384