Lsi04G019800.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi04G019800.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	50S ribosomal protein L13, putative
Location	chr04 : 26855033 .. 26858324 (+)
Sequence length	1282

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAATTTATCCGTTCTTCCGGTTTCCCATTTCTCATCTTCGCATTCACAAAGGCAAGAGTCTTATCCACTATCCATAGCAGAAATTTCTCAACTGAAACACCGCCAAAGCTACAATGGCGATGCTCTGTGCTTCCTCCTCTACACCCACTTTCTCTTTACATTCCACTCTTTTCAATGGAAGCACAAGTAACAGAGGCATTCCCAGAAAGTCACTCCTTGCTGGGTTTCCACTCCCACATTCAAAATCTTCTTTTCTTCTAACCCAGACCACGATTTCTCTAAACTCCAACCCCAAGAGTCCGCTCCTTCAAGTGCGAGCTCAGGAGCTGGATCGTGTCCCTTTAGAACAACGGTGGATGTTCGAGGGCGACGAGCTCGACGGCCCTGTACGTCTCTTAATCTTACAATATGTTTGTTTGTTTGCTTGCGCTAAATCTGGTAGTGAAAATGGTCTTGTAGATTTGAGACTAATTGAACTCGTTCTTCGCATAACACGCTAATGGGTTCCTTGCAAACCTAAAACGCCTATCCAATTTTGTTATCCCCAGCTTCCTATGAGCCCTCAATCATTCGTGTTCTTTTAGTTGGGTTGTTGTTTTGTTGTTCCTTTGGGGGCTACTACATCTAACTTTTGGCTTCTCCACATTGCAATTTCGCTTTCCATTAACATACTGAAGTTAATTTTTACAGAAACCATCAATAAAAAAACTGGGTACAACTGTAATTGCCCTTATAACTGAACATACAATCCTCTTTTTACTTGTTAGTTGGTAGGCCAATTTGATGCCCACTTTCTGAATTTTGAAGAATTATTTCCTGTTTTTGCTTGTTTATTTTCCCTTTTCAGATTGGATACTTAGCAGTCGTAATTCTTTTCCATTCAGGACATATGGAATAAAACATGGTACCCGAAGGCTGCAGATCATGTGAACACAGAAAAACCTTGGTATGTGGTTGATGCCACTGATAAGATTTTGGGAAGACTAGCTTCGACCATTGCCAATCATATCCGAGGGAAGGATTTGGCAACCTACACTCCAAGTGTGGATATGGGGGCTTTTGTGATTGTGGTATGTGGTTGTACTTGTACATGATGTTTTATTGTGACTTTCATAAAAAAGAATGATCTATTGTGGCTGCAATCACTACAACAGAGTTTCGGTATCAGCATCAATGAATGGTTTCCGCTTTTGTCTACTCAACTTGAACCTTCTTGCTATTTGTTTACATTTAGTTGTTTATTCACTGTCACCCATGAATTATACTTATTCTCTTGATCCTACATAGGTAAATGCAGAAAAAGTTGCGGTGTCTGGTAGAAAGAGGACACAAAAACTATACAGGAGGCATTCAGGGCGACCAGGTGGTATGACCGTAGAAACTTTTGACCAGCTACAGCAGAGAATTCCTGAAAGAATTATTGAGCATGCTGTTCGTGGTATGCTTCCAAAAGGGAGGGTAAGTGATTCGTACTACTTAAGTGCCATATTGTATTATATGCACGCAGACTGTTCTGCAAACTGAATATTTGTGGGTGATAGAATGATTGTTTAAGTTTTGAGCAACGCTTCATTTAGGAAAACTGTATCAGTTTTGTTAGAAGCTTTAGTAGGTCGGTTAAGATAGCTTTTGGTGTTTTGGTTGTTGTAGACTATTGGTTAGCTATGTTCCATCTTACAGAAGAGTTCCTCAAACTTATCACCAATGGGGTTTTACAGCTTCAGATTCATATGTAAGTTGTTCCAATGGCTCTCACATTCTGTGACATAGGATTCTAGAAGCAACGAGTTGGTGTATATGACAAATAATGGCATCTTTCAGTTTATTAGAACTAGAAGAATCTCCAATGATAAGAAAATAAAATTTCGGGTGGCCTTGTCTTCAAGAGGATTTCACAACCTGCATTGTAATTTGTGGGTTAATGGTGTGGAGGATGTGACAAGAATGAGTTGCTTGGGAAAGTTTGAAGTGTTTGAGAAACTAACATATGGTCTTTTGCTTTATTCCTTGGCTACTCTACTGGCATTCTGTTGGTTACATTTAATAGTAAAAATCTTTGACCATTTATGGTCATATTGTCACTACCAGAATCCAAGATCTGTACGGTTGATGGAGCCTGACAACTGTGTGTAAGGTGATTTCTTGGCAATTCAGGACCAGGAAAGCTAAAAAATTTGCTTTGGCAGTATATTTCGAAATCTTTTGGTTGTCTTTTGAACTACAATCATTGATTTGAAAATTTGATGCCTTCTGAATACCTAGTATATGTTATAGGATAAATTTGGGTATCAGATAACATTATCTTAAATTCAGCTCTCTAACAAGGACACAGTAAAATCTACATTAGGAAAAGGAACGACTTTTCATCTGTGGACAGCGTCTGCACAATATGTTTTCCTTTTGAATCTATTTCAAAAGAATATTAAACAGTCCTGCATCATCCTTTGAAGAATTCGTTTGTGACAAACTGGCAGTTGTTTGTGATGTGTATTCTGACGTTGGAACTTCCCGCCGTTGTCAGTGCTTTGACACGACGTGAATGAAACTTTTTTTTTTAGATTTTTCTCAAGTAGCTGTGAAGTATTTGCCTTGCAATAACAAGGCGCCTTGCTTGTAATACTGTTAACCATCTCACTTTTTATTTCATGTAAACTGCTTCATATTGTGGTGTTTAGGAATTTCCCTGTTTCCTGCCTCCATTGATGTTCCTGATAATTTATTGGCTGTTTCAAACCATGGCAATTTATGTGCAGCTTGGAAGAGCACTTTTTAACCACTTGAAGGTTTACAAAGGACCAGACCATCCACATGATGCACAAAAGCCAGTTGAGCTGCCAATTAGGGACAAAAGGATAAACAAAGAAAGATAGTATGATCTACTAAGAGAAGACAAACGAGGAAGAGACAAAGCTCTCTCATATGAGGTCCCCAATGTTCATAAAATCGAGTTAGAGTTTTCATGCTTCAACTCAGTTTGATATCAGTATTTGATCTGTAATTTGATTCCAAATTCTAGTCTCCTCTGATAACATCTTAGTCCTAAGTTGCGTTTTCGAAGTTATTAATTCAGAAGAGGAAAATTTTCAAATCTTGCCCTGTTGAAGGTCGTGATAATGGTAATTTGATTACATTTGTTGATTGATTTCCCTAAAAGGCATATTAGTATCACAATCCATGAAAGTGGTGATCTTTTGGATTCTAACTTTATATGGATTGAGCTGAATTTGTACAACAATGAACATTAGTTTATAATTACATGCATATATATTTCAGTGGAAGCTTTAGAGGAAA

mRNA sequence

CAAATTTATCCGTTCTTCCGGTTTCCCATTTCTCATCTTCGCATTCACAAAGGCAAGAGTCTTATCCACTATCCATAGCAGAAATTTCTCAACTGAAACACCGCCAAAGCTACAATGGCGATGCTCTGTGCTTCCTCCTCTACACCCACTTTCTCTTTACATTCCACTCTTTTCAATGGAAGCACAAGTAACAGAGGCATTCCCAGAAAGTCACTCCTTGCTGGGTTTCCACTCCCACATTCAAAATCTTCTTTTCTTCTAACCCAGACCACGATTTCTCTAAACTCCAACCCCAAGAGTCCGCTCCTTCAAGTGCGAGCTCAGGAGCTGGATCGTGTCCCTTTAGAACAACGGTGGATGTTCGAGGGCGACGAGCTCGACGGCCCTGACATATGGAATAAAACATGGTACCCGAAGGCTGCAGATCATGTGAACACAGAAAAACCTTGGTATGTGGTTGATGCCACTGATAAGATTTTGGGAAGACTAGCTTCGACCATTGCCAATCATATCCGAGGGAAGGATTTGGCAACCTACACTCCAAGTGTGGATATGGGGGCTTTTGTGATTGTGGTAAATGCAGAAAAAGTTGCGGTGTCTGGTAGAAAGAGGACACAAAAACTATACAGGAGGCATTCAGGGCGACCAGGTGGTATGACCGTAGAAACTTTTGACCAGCTACAGCAGAGAATTCCTGAAAGAATTATTGAGCATGCTGTTCGTGGTATGCTTCCAAAAGGGAGGCTTGGAAGAGCACTTTTTAACCACTTGAAGGTTTACAAAGGACCAGACCATCCACATGATGCACAAAAGCCAGTTGAGCTGCCAATTAGGGACAAAAGGATAAACAAAGAAAGATAGTATGATCTACTAAGAGAAGACAAACGAGGAAGAGACAAAGCTCTCTCATATGAGGTCCCCAATGTTCATAAAATCGAGTTAGAGTTTTCATGCTTCAACTCAGTTTGATATCAGTATTTGATCTGTAATTTGATTCCAAATTCTAGTCTCCTCTGATAACATCTTAGTCCTAAGTTGCGTTTTCGAAGTTATTAATTCAGAAGAGGAAAATTTTCAAATCTTGCCCTGTTGAAGGTCGTGATAATGGTAATTTGATTACATTTGTTGATTGATTTCCCTAAAAGGCATATTAGTATCACAATCCATGAAAGTGGTGATCTTTTGGATTCTAACTTTATATGGATTGAGCTGAATTTGTACAACAATGAACATTAGTTTATAATTACATGCATATATATTTCAGTGGAAGCTTTAGAGGAAA

Coding sequence (CDS)

ATGGCGATGCTCTGTGCTTCCTCCTCTACACCCACTTTCTCTTTACATTCCACTCTTTTCAATGGAAGCACAAGTAACAGAGGCATTCCCAGAAAGTCACTCCTTGCTGGGTTTCCACTCCCACATTCAAAATCTTCTTTTCTTCTAACCCAGACCACGATTTCTCTAAACTCCAACCCCAAGAGTCCGCTCCTTCAAGTGCGAGCTCAGGAGCTGGATCGTGTCCCTTTAGAACAACGGTGGATGTTCGAGGGCGACGAGCTCGACGGCCCTGACATATGGAATAAAACATGGTACCCGAAGGCTGCAGATCATGTGAACACAGAAAAACCTTGGTATGTGGTTGATGCCACTGATAAGATTTTGGGAAGACTAGCTTCGACCATTGCCAATCATATCCGAGGGAAGGATTTGGCAACCTACACTCCAAGTGTGGATATGGGGGCTTTTGTGATTGTGGTAAATGCAGAAAAAGTTGCGGTGTCTGGTAGAAAGAGGACACAAAAACTATACAGGAGGCATTCAGGGCGACCAGGTGGTATGACCGTAGAAACTTTTGACCAGCTACAGCAGAGAATTCCTGAAAGAATTATTGAGCATGCTGTTCGTGGTATGCTTCCAAAAGGGAGGCTTGGAAGAGCACTTTTTAACCACTTGAAGGTTTACAAAGGACCAGACCATCCACATGATGCACAAAAGCCAGTTGAGCTGCCAATTAGGGACAAAAGGATAAACAAAGAAAGATAG

Protein sequence

MAMLCASSSTPTFSLHSTLFNGSTSNRGIPRKSLLAGFPLPHSKSSFLLTQTTISLNSNPKSPLLQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHDAQKPVELPIRDKRINKER

Homology

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BLAST of Lsi04G019800.1 vs. Swiss-Prot
Match: RK13_ARATH (50S ribosomal protein L13, chloroplastic OS=Arabidopsis thaliana GN=RPL13 PE=2 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 1.4e-90
Identity = 171/253 (67.59%), Postives = 198/253 (78.26%), Query Frame = 1


Query: 1   MAMLCASSSTPTFSLHSTLFNGSTSNRGIPRKSLLAGFPLPHSKSSFLLTQTTISLNSNP 60
           MA+LC+SS+         L + S  + G  RKS   GF L    ++       + + +N 
Sbjct: 1   MAVLCSSSTV-------ILSSSSVKSSGSERKSPFLGFSL----TAISKPSVRVGIYANS 60

Query: 61  KSPLLQVRAQE-----LDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVV 120
           K  L QV+ +         VP  QRWMF+ +E +GPDIWN TWYPKA+DHVNT+KPW+VV
Sbjct: 61  KRGL-QVKCEAEPTTTTSLVPANQRWMFDEEEANGPDIWNTTWYPKASDHVNTDKPWFVV 120

Query: 121 DATDKILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHS 180
           DATDKILGRLASTIANHIRGK+LA+YTPSVDMGAFVIVVNAEKVAVSG+KR QKLYRRHS
Sbjct: 121 DATDKILGRLASTIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHS 180

Query: 181 GRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHDAQKPV 240
           GRPGGMTVETFDQLQQRIPERI+EHAVRGMLPKGRLGRALFNHLKVYKGPDHPH+AQKP+
Sbjct: 181 GRPGGMTVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPL 240

Query: 241 ELPIRDKRINKER 249
           +LPIRDKRI  ++
Sbjct: 241 DLPIRDKRIQLQK 241

[Close]

BLAST of Lsi04G019800.1 vs. Swiss-Prot
Match: RK13_SPIOL (50S ribosomal protein L13, chloroplastic OS=Spinacia oleracea GN=RPL13 PE=1 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 4.7e-81
Identity = 156/250 (62.40%), Postives = 186/250 (74.40%), Query Frame = 1


Query: 3   MLCASSST-PTFSLHSTLFNGSTSNRGI---PRKSLLAGFPLPHSKSSFLLTQTTISLNS 62
           M CASS T P+     + F  +     +   PR ++ A   +   KS+   T+ T     
Sbjct: 4   MACASSLTFPSAQTQKSFFGTNVKQTPVLSFPRPTVAAAVAVSARKSTSASTKCTEEWRQ 63

Query: 63  NPKSPLLQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDAT 122
             ++   +     +  VPL+QRWMF  +E  GPDIWN TWYPK+ADHV T+K WYVVDAT
Sbjct: 64  LKEAVKKEFA---IPHVPLDQRWMFTLEEATGPDIWNTTWYPKSADHVPTDKKWYVVDAT 123

Query: 123 DKILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRP 182
           D ILGR+ASTIA HIRGK+LA+YTPSVDMGAFVIVVNA+KVAVSG+KRTQKLYRRHSGRP
Sbjct: 124 DLILGRMASTIAIHIRGKNLASYTPSVDMGAFVIVVNADKVAVSGKKRTQKLYRRHSGRP 183

Query: 183 GGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHDAQKPVELP 242
           GG+  ETFDQLQ+RIPERIIEHAVRGMLPKGRLGR LFNHLKVYKG +HPH AQ+P++LP
Sbjct: 184 GGLKEETFDQLQKRIPERIIEHAVRGMLPKGRLGRYLFNHLKVYKGAEHPHQAQQPIDLP 243

Query: 243 IRDKRINKER 249
           +RDKRI  E+
Sbjct: 244 LRDKRIRVEK 250

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BLAST of Lsi04G019800.1 vs. Swiss-Prot
Match: RL13_ANAVT (50S ribosomal protein L13 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplM PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 6.5e-51
Identity = 101/145 (69.66%), Postives = 115/145 (79.31%), Query Frame = 1


Query: 95  NKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLATYTPSVDMGAFVIVV 154
           +KT+ P      + E+ WYVVDATDK LGRLAS IA  +RGK+ A YTP +D G FVIVV
Sbjct: 2   SKTYLPPQE---SLERDWYVVDATDKRLGRLASEIAMILRGKNKAHYTPHLDTGDFVIVV 61

Query: 155 NAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRA 214
           NAEKVAV+G+KRTQKLYRRHSGRPGGM  ETF +LQQR+PERI+EHAV+GMLPK  LG+ 
Sbjct: 62  NAEKVAVTGKKRTQKLYRRHSGRPGGMKTETFAKLQQRLPERIVEHAVKGMLPKNSLGKQ 121

Query: 215 LFNHLKVYKGPDHPHDAQKPVELPI 240
           LF  LKVY GP HPHDAQKP EL I
Sbjct: 122 LFTKLKVYAGPTHPHDAQKPKELNI 143

[Close]

BLAST of Lsi04G019800.1 vs. Swiss-Prot
Match: RL13_NOSS1 (50S ribosomal protein L13 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rplM PE=3 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.9e-50
Identity = 100/145 (68.97%), Postives = 115/145 (79.31%), Query Frame = 1


Query: 95  NKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLATYTPSVDMGAFVIVV 154
           +KT+ P      + E+ WYVVDATDK LGRLAS IA  +RGK+ A YTP +D G FVIVV
Sbjct: 2   SKTYLPPQE---SLERDWYVVDATDKRLGRLASEIAMILRGKNKAHYTPHLDTGDFVIVV 61

Query: 155 NAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRA 214
           NA+KVAV+G+KRTQKLYRRHSGRPGGM  ETF +LQQR+PERI+EHAV+GMLPK  LG+ 
Sbjct: 62  NAKKVAVTGKKRTQKLYRRHSGRPGGMKTETFAKLQQRLPERIVEHAVKGMLPKNSLGKQ 121

Query: 215 LFNHLKVYKGPDHPHDAQKPVELPI 240
           LF  LKVY GP HPHDAQKP EL I
Sbjct: 122 LFTKLKVYAGPTHPHDAQKPKELNI 143

[Close]

BLAST of Lsi04G019800.1 vs. Swiss-Prot
Match: RL13_CYAP4 (50S ribosomal protein L13 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplM PE=3 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 4.7e-49
Identity = 97/146 (66.44%), Postives = 112/146 (76.71%), Query Frame = 1


Query: 95  NKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLATYTPSVDMGAFVIVV 154
           NKT+ P      + E  WYVVDAT++ LGRLA+ IA  +RGK    YTPS+D G FVIVV
Sbjct: 2   NKTYLPSTT---SLEPKWYVVDATEQHLGRLATQIAMILRGKTKPIYTPSMDTGDFVIVV 61

Query: 155 NAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRA 214
           NAEKVAV+G+KRTQK+YRRHSGRPGGM  ETF +LQ R+PERIIEHAV+GMLPK  LGR 
Sbjct: 62  NAEKVAVTGKKRTQKIYRRHSGRPGGMKTETFAKLQSRLPERIIEHAVKGMLPKNTLGRN 121

Query: 215 LFNHLKVYKGPDHPHDAQKPVELPIR 241
           LF  LKVY GPDHPH AQKP  L ++
Sbjct: 122 LFTKLKVYAGPDHPHQAQKPEVLTLK 144

[Close]

BLAST of Lsi04G019800.1 vs. TrEMBL
Match: A0A0A0KZG1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G623380 PE=3 SV=1)

HSP 1 Score: 468.4 bits (1204), Expect = 5.5e-129
Identity = 229/248 (92.34%), Postives = 236/248 (95.16%), Query Frame = 1


Query: 1   MAMLCASSSTPTFSLHSTLFNGSTSNRGIPRKSLLAGFPLPHSKSSFLLTQTTISLNSNP 60
           MAMLCASSSTPTFSLHSTL NG+TSN+  PR SLL  FPLPHSKSSFLLTQT+ISL SN 
Sbjct: 1   MAMLCASSSTPTFSLHSTLTNGTTSNKSFPRNSLLVAFPLPHSKSSFLLTQTSISLTSNS 60

Query: 61  KSPLLQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120
           K   LQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK
Sbjct: 61  KRSALQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDL TYTPSVDMGAFVIVVNAEK+AVSG+KRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKIAVSGKKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHDAQKPVELPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPH+AQKPV+LPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]

BLAST of Lsi04G019800.1 vs. TrEMBL
Match: A0A0D2Q790_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G048000 PE=3 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 2.4e-92
Identity = 177/248 (71.37%), Postives = 193/248 (77.82%), Query Frame = 1


Query: 1   MAMLCASSSTPTFSLHSTLFNGSTSNRGIPRKSLLAGFPLPHSKSSFLLTQTTISLNSNP 60
           MA+LCAS+ST   S   T F          + S L  FP+        +  TT+S +   
Sbjct: 1   MAILCASTSTIFSSSERTSFGSLKKTIPSNQSSFLGFFPVAALSKPGSVLPTTLSFSKRD 60

Query: 61  KSPLLQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120
                +V  Q+L  VP  QRWMFE  E DGPDIWN TWYPKA DH+NTEK WYVVDATDK
Sbjct: 61  ----FRVCCQDLSLVPENQRWMFEESEADGPDIWNNTWYPKAKDHINTEKTWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180
           ILGRLASTIA HIRGK+LATYTPSVDMGAFVIVVNAEKVAVSG+KRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIAVHIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHDAQKPVELPIR 240
           M VETF+QLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHDAQKP+ELPIR
Sbjct: 181 MKVETFNQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHDAQKPIELPIR 240

Query: 241 DKRINKER 249
           DKR+ K+R
Sbjct: 241 DKRVQKQR 244

[Close]

BLAST of Lsi04G019800.1 vs. TrEMBL
Match: B9T1K1_RICCO (50S ribosomal protein L13, putative OS=Ricinus communis GN=RCOM_0216630 PE=3 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 4.1e-92
Identity = 180/250 (72.00%), Postives = 202/250 (80.80%), Query Frame = 1


Query: 1   MAMLCASSSTPTFSLHSTLFNGSTSNRGIPRKSLLAGFPLPHSKSSFLLTQTTISLNSNP 60
           MA LCA SS    S  S+    ST+ R  P  + +AG  L  SK S    +T+ S + + 
Sbjct: 1   MAFLCAPSSITLSSSSSSSSTASTTQR--PYTTFIAGSSLLKSKPS---VRTSFSASCSR 60

Query: 61  KSPLLQVRAQE--LDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDAT 120
              +L  +  +  +  VP++QRWMFE  EL+GPDIWNKTWYPKAADHVNTEKPWYVVDAT
Sbjct: 61  SFTVLSEKTDKKVVPHVPVDQRWMFEEFELNGPDIWNKTWYPKAADHVNTEKPWYVVDAT 120

Query: 121 DKILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRP 180
           DKILGRLASTIA +IRGK+LATYTPSVDMGAFVIVVNAEKVAVSG+KRTQKLYRRHSGRP
Sbjct: 121 DKILGRLASTIAIYIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRP 180

Query: 181 GGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHDAQKPVELP 240
           GGM VETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPH+AQKP+ELP
Sbjct: 181 GGMKVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPIELP 240

Query: 241 IRDKRINKER 249
           IRDKRI  ++
Sbjct: 241 IRDKRIQIQK 245

[Close]

BLAST of Lsi04G019800.1 vs. TrEMBL
Match: M5X202_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010274mg PE=3 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 7.0e-92
Identity = 176/246 (71.54%), Postives = 198/246 (80.49%), Query Frame = 1


Query: 5   CASSSTPTFSLHSTLFNGSTSNRGIPRKSLLAGFPLPHSKSSFLLTQTTISLN--SNPKS 64
           C+SS+ P FS        S+S   I  K+   G      +  +L T T +  +  SNP+ 
Sbjct: 21  CSSSTKPPFS--------SSSKNVI--KTPFVGLSAAPPQKLWLPTTTNLGFDNGSNPRR 80

Query: 65  PLLQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDKIL 124
                  +E+ RVPL+QRWMFE DE+ GPDIWN TWYPKAADHVNTEKPWY+VDATDKIL
Sbjct: 81  SFEVFSTKEIARVPLDQRWMFEDDEVGGPDIWNNTWYPKAADHVNTEKPWYIVDATDKIL 140

Query: 125 GRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMT 184
           GR+ASTIA +IRGK+LATYTPSVDMGAFVIVVNAEKVAVSG+KRTQKLYRRHSGRPGGMT
Sbjct: 141 GRMASTIAIYIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMT 200

Query: 185 VETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHDAQKPVELPIRDK 244
           VETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPH+AQKPVELPI+DK
Sbjct: 201 VETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIKDK 256

Query: 245 RINKER 249
           RI  ++
Sbjct: 261 RIQIQK 256

[Close]

BLAST of Lsi04G019800.1 vs. TrEMBL
Match: M1AA76_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400007062 PE=3 SV=1)

HSP 1 Score: 343.6 bits (880), Expect = 2.0e-91
Identity = 179/249 (71.89%), Postives = 201/249 (80.72%), Query Frame = 1


Query: 1   MAMLCASSSTPTFSLHSTLFNGSTSNRGIPRKSLLAGFPLPHSKSSFLLTQTTISLNSNP 60
           MA+ C+SSS   F+ HS     S+S    P K+L  GF +  SK S ++ +T  +     
Sbjct: 1   MAVQCSSSSV-IFASHSPAKTFSSS----PNKTLFLGFSIS-SKPSIVVAKTHRAT---- 60

Query: 61  KSPLLQVRAQELDR-VPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATD 120
                Q+  QE    VPLEQRWMFE  E++GPDIWN+TWYPK ADHVNT+KPWY+VDATD
Sbjct: 61  -----QICCQEKTALVPLEQRWMFEDSEINGPDIWNETWYPKGADHVNTDKPWYIVDATD 120

Query: 121 KILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPG 180
           KILGRLASTIA HIRGK+LATYTPSVDMGAFVIVVNAEKVAVSG+KR QKLYRRHSGRPG
Sbjct: 121 KILGRLASTIAIHIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHSGRPG 180

Query: 181 GMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHDAQKPVELPI 240
           GMTVETFDQLQQRIPERI+EHAVRGMLPKGRLGR LFNHLKVY+GPDHPHDAQKP+ELPI
Sbjct: 181 GMTVETFDQLQQRIPERILEHAVRGMLPKGRLGRQLFNHLKVYEGPDHPHDAQKPIELPI 234

Query: 241 RDKRINKER 249
           RDKRI K+R
Sbjct: 241 RDKRIQKQR 234

[Close]

BLAST of Lsi04G019800.1 vs. TAIR10
Match: AT1G78630.1 (AT1G78630.1 Ribosomal protein L13 family protein)

HSP 1 Score: 334.0 bits (855), Expect = 8.1e-92
Identity = 171/253 (67.59%), Postives = 198/253 (78.26%), Query Frame = 1


Query: 1   MAMLCASSSTPTFSLHSTLFNGSTSNRGIPRKSLLAGFPLPHSKSSFLLTQTTISLNSNP 60
           MA+LC+SS+         L + S  + G  RKS   GF L    ++       + + +N 
Sbjct: 1   MAVLCSSSTV-------ILSSSSVKSSGSERKSPFLGFSL----TAISKPSVRVGIYANS 60

Query: 61  KSPLLQVRAQE-----LDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVV 120
           K  L QV+ +         VP  QRWMF+ +E +GPDIWN TWYPKA+DHVNT+KPW+VV
Sbjct: 61  KRGL-QVKCEAEPTTTTSLVPANQRWMFDEEEANGPDIWNTTWYPKASDHVNTDKPWFVV 120

Query: 121 DATDKILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHS 180
           DATDKILGRLASTIANHIRGK+LA+YTPSVDMGAFVIVVNAEKVAVSG+KR QKLYRRHS
Sbjct: 121 DATDKILGRLASTIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHS 180

Query: 181 GRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHDAQKPV 240
           GRPGGMTVETFDQLQQRIPERI+EHAVRGMLPKGRLGRALFNHLKVYKGPDHPH+AQKP+
Sbjct: 181 GRPGGMTVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPL 240

Query: 241 ELPIRDKRINKER 249
           +LPIRDKRI  ++
Sbjct: 241 DLPIRDKRIQLQK 241

[Close]

BLAST of Lsi04G019800.1 vs. TAIR10
Match: AT3G01790.1 (AT3G01790.1 Ribosomal protein L13 family protein)

HSP 1 Score: 87.8 bits (216), Expect = 1.0e-17
Identity = 47/125 (37.60%), Postives = 69/125 (55.20%), Query Frame = 1


Query: 112 WYVVDATDKILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLY 171
           W V DA  ++LGRLAS I+  ++ KD  TY P+ D G   IV+NA+++  +GRK T K Y
Sbjct: 32  WRVFDARGQVLGRLASQISTVLQAKDKPTYCPNRDDGDICIVLNAKEIGFTGRKLTDKFY 91

Query: 172 RRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHDA 231
           R H+G  G +   +      + P  +I  AV  MLP   L       L++++G +HP   
Sbjct: 92  RWHTGYIGHLKERSLKDQMAKDPTEVIRKAVWRMLPSNNLRDDRDRKLRIFEGGEHPF-G 151

Query: 232 QKPVE 237
            KP+E
Sbjct: 152 DKPLE 155

[Close]

BLAST of Lsi04G019800.1 vs. NCBI nr
Match: gi|449456559|ref|XP_004146016.1| (PREDICTED: 50S ribosomal protein L13, chloroplastic [Cucumis sativus])

HSP 1 Score: 468.4 bits (1204), Expect = 7.8e-129
Identity = 229/248 (92.34%), Postives = 236/248 (95.16%), Query Frame = 1


Query: 1   MAMLCASSSTPTFSLHSTLFNGSTSNRGIPRKSLLAGFPLPHSKSSFLLTQTTISLNSNP 60
           MAMLCASSSTPTFSLHSTL NG+TSN+  PR SLL  FPLPHSKSSFLLTQT+ISL SN 
Sbjct: 1   MAMLCASSSTPTFSLHSTLTNGTTSNKSFPRNSLLVAFPLPHSKSSFLLTQTSISLTSNS 60

Query: 61  KSPLLQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120
           K   LQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK
Sbjct: 61  KRSALQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDL TYTPSVDMGAFVIVVNAEK+AVSG+KRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKIAVSGKKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHDAQKPVELPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPH+AQKPV+LPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]

BLAST of Lsi04G019800.1 vs. NCBI nr
Match: gi|659127588|ref|XP_008463780.1| (PREDICTED: 50S ribosomal protein L13, chloroplastic [Cucumis melo])

HSP 1 Score: 466.8 bits (1200), Expect = 2.3e-128
Identity = 230/248 (92.74%), Postives = 235/248 (94.76%), Query Frame = 1


Query: 1   MAMLCASSSTPTFSLHSTLFNGSTSNRGIPRKSLLAGFPLPHSKSSFLLTQTTISLNSNP 60
           MAMLCASSSTPTFSLHS+L NG+TSNR IP  SLL  FPLPHSKSSFLLTQTTI L SN 
Sbjct: 1   MAMLCASSSTPTFSLHSSLTNGTTSNRSIPTNSLLVAFPLPHSKSSFLLTQTTIPLTSNS 60

Query: 61  KSPLLQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120
           K   L+VRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK
Sbjct: 61  KRSALRVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDL TYTPSVDMGAFVIVVNAEKVAVSG+KRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHDAQKPVELPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPH+AQKPVELPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]

BLAST of Lsi04G019800.1 vs. NCBI nr
Match: gi|645239868|ref|XP_008226334.1| (PREDICTED: 50S ribosomal protein L13, chloroplastic [Prunus mume])

HSP 1 Score: 350.5 bits (898), Expect = 2.4e-93
Identity = 178/246 (72.36%), Postives = 201/246 (81.71%), Query Frame = 1


Query: 5   CASSSTPTFSLHSTLFNGSTSNRGIPRKSLLAGFPLPHSKSSFLLTQTTISLN--SNPKS 64
           C+SS+ P FS        S+S   I  K+   G  +   +  +L T T +  +  SNP+ 
Sbjct: 21  CSSSTKPPFS--------SSSKNVI--KAPFVGLSVAPPQKLWLPTTTNLGFDNGSNPRR 80

Query: 65  PLLQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDKIL 124
                  +E+ RVPL+QRWMFE DE+DGPDIWNKTWYPKAADHVNTEKPWY+VDATDKIL
Sbjct: 81  SFEVFSTKEIARVPLDQRWMFEDDEVDGPDIWNKTWYPKAADHVNTEKPWYIVDATDKIL 140

Query: 125 GRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMT 184
           GR+ASTIA +IRGK+LATYTPSVDMGAFVIVVNAEKVAVSG+KRTQKLYRRHSGRPGGMT
Sbjct: 141 GRMASTIAIYIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMT 200

Query: 185 VETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHDAQKPVELPIRDK 244
           VETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPH+AQKPVELPI+DK
Sbjct: 201 VETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIKDK 256

Query: 245 RINKER 249
           RI  ++
Sbjct: 261 RIQIQK 256

[Close]

BLAST of Lsi04G019800.1 vs. NCBI nr
Match: gi|823130882|ref|XP_012455255.1| (PREDICTED: 50S ribosomal protein L13, chloroplastic isoform X1 [Gossypium raimondii])

HSP 1 Score: 346.7 bits (888), Expect = 3.4e-92
Identity = 177/248 (71.37%), Postives = 193/248 (77.82%), Query Frame = 1


Query: 1   MAMLCASSSTPTFSLHSTLFNGSTSNRGIPRKSLLAGFPLPHSKSSFLLTQTTISLNSNP 60
           MA+LCAS+ST   S   T F          + S L  FP+        +  TT+S +   
Sbjct: 1   MAILCASTSTIFSSSERTSFGSLKKTIPSNQSSFLGFFPVAALSKPGSVLPTTLSFSKRD 60

Query: 61  KSPLLQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120
                +V  Q+L  VP  QRWMFE  E DGPDIWN TWYPKA DH+NTEK WYVVDATDK
Sbjct: 61  ----FRVCCQDLSLVPENQRWMFEESEADGPDIWNNTWYPKAKDHINTEKTWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180
           ILGRLASTIA HIRGK+LATYTPSVDMGAFVIVVNAEKVAVSG+KRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIAVHIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHDAQKPVELPIR 240
           M VETF+QLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHDAQKP+ELPIR
Sbjct: 181 MKVETFNQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHDAQKPIELPIR 240

Query: 241 DKRINKER 249
           DKR+ K+R
Sbjct: 241 DKRVQKQR 244

[Close]

BLAST of Lsi04G019800.1 vs. NCBI nr
Match: gi|255582683|ref|XP_002532120.1| (PREDICTED: 50S ribosomal protein L13, chloroplastic [Ricinus communis])

HSP 1 Score: 345.9 bits (886), Expect = 5.9e-92
Identity = 180/250 (72.00%), Postives = 202/250 (80.80%), Query Frame = 1


Query: 1   MAMLCASSSTPTFSLHSTLFNGSTSNRGIPRKSLLAGFPLPHSKSSFLLTQTTISLNSNP 60
           MA LCA SS    S  S+    ST+ R  P  + +AG  L  SK S    +T+ S + + 
Sbjct: 1   MAFLCAPSSITLSSSSSSSSTASTTQR--PYTTFIAGSSLLKSKPS---VRTSFSASCSR 60

Query: 61  KSPLLQVRAQE--LDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDAT 120
              +L  +  +  +  VP++QRWMFE  EL+GPDIWNKTWYPKAADHVNTEKPWYVVDAT
Sbjct: 61  SFTVLSEKTDKKVVPHVPVDQRWMFEEFELNGPDIWNKTWYPKAADHVNTEKPWYVVDAT 120

Query: 121 DKILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRP 180
           DKILGRLASTIA +IRGK+LATYTPSVDMGAFVIVVNAEKVAVSG+KRTQKLYRRHSGRP
Sbjct: 121 DKILGRLASTIAIYIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRP 180

Query: 181 GGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHDAQKPVELP 240
           GGM VETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPH+AQKP+ELP
Sbjct: 181 GGMKVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPIELP 240

Query: 241 IRDKRINKER 249
           IRDKRI  ++
Sbjct: 241 IRDKRIQIQK 245

The following BLAST results are available for this feature:

BLAST of Lsi04G019800.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RK13_ARATH	1.4e-90	67.59	50S ribosomal protein L13, chloroplastic OS=Arabidopsis thaliana GN=RPL13 PE=2 S...	[more]
RK13_SPIOL	4.7e-81	62.40	50S ribosomal protein L13, chloroplastic OS=Spinacia oleracea GN=RPL13 PE=1 SV=1	[more]
RL13_ANAVT	6.5e-51	69.66	50S ribosomal protein L13 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) ...	[more]
RL13_NOSS1	1.9e-50	68.97	50S ribosomal protein L13 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rplM PE...	[more]
RL13_CYAP4	4.7e-49	66.44	50S ribosomal protein L13 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rp...	[more]

BLAST of Lsi04G019800.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZG1_CUCSA	5.5e-129	92.34	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G623380 PE=3 SV=1	[more]
A0A0D2Q790_GOSRA	2.4e-92	71.37	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G048000 PE=3 SV=1	[more]
B9T1K1_RICCO	4.1e-92	72.00	50S ribosomal protein L13, putative OS=Ricinus communis GN=RCOM_0216630 PE=3 SV=...	[more]
M5X202_PRUPE	7.0e-92	71.54	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010274mg PE=3 SV=1	[more]
M1AA76_SOLTU	2.0e-91	71.89	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400007062 PE=3 SV=1	[more]

BLAST of Lsi04G019800.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G78630.1	8.1e-92	67.59	Ribosomal protein L13 family protein	[more]
AT3G01790.1	1.0e-17	37.60	Ribosomal protein L13 family protein	[more]

BLAST of Lsi04G019800.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449456559\|ref\|XP_004146016.1\|	7.8e-129	92.34	PREDICTED: 50S ribosomal protein L13, chloroplastic [Cucumis sativus]	[more]
gi\|659127588\|ref\|XP_008463780.1\|	2.3e-128	92.74	PREDICTED: 50S ribosomal protein L13, chloroplastic [Cucumis melo]	[more]
gi\|645239868\|ref\|XP_008226334.1\|	2.4e-93	72.36	PREDICTED: 50S ribosomal protein L13, chloroplastic [Prunus mume]	[more]
gi\|823130882\|ref\|XP_012455255.1\|	3.4e-92	71.37	PREDICTED: 50S ribosomal protein L13, chloroplastic isoform X1 [Gossypium raimon...	[more]
gi\|255582683\|ref\|XP_002532120.1\|	5.9e-92	72.00	PREDICTED: 50S ribosomal protein L13, chloroplastic [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR023563	Ribosomal_L13_CS
IPR005823	Ribosomal_L13_bac-type
IPR005822	Ribosomal_L13

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0009735	response to cytokinin
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0009579	thylakoid
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003729	mRNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi04G019800	Lsi04G019800	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi04G019800.1	Lsi04G019800.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi04G019800.1.five_prime_UTR.1	Lsi04G019800.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi04G019800.1.CDS.1	Lsi04G019800.1.CDS.1	CDS
Lsi04G019800.1.CDS.2	Lsi04G019800.1.CDS.2	CDS
Lsi04G019800.1.CDS.3	Lsi04G019800.1.CDS.3	CDS
Lsi04G019800.1.CDS.4	Lsi04G019800.1.CDS.4	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi04G019800.1.three_prime_UTR.1	Lsi04G019800.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005822	Ribosomal protein L13	GENE3D	G3DSA:3.90.1180.10		coord: 106..238 score: 1.5
IPR005822	Ribosomal protein L13	HAMAP	MF_01366	Ribosomal_L13	coord: 112..238 score: 26
IPR005822	Ribosomal protein L13	PANTHER	PTHR11545	RIBOSOMAL PROTEIN L13	coord: 95..248 score: 8.3E
IPR005822	Ribosomal protein L13	PFAM	PF00572	Ribosomal_L13	coord: 112..234 score: 4.7
IPR005822	Ribosomal protein L13	unknown	SSF52161	Ribosomal protein L13	coord: 106..240 score: 4.97
IPR005823	Ribosomal protein L13, bacterial-type	TIGRFAMs	TIGR01066	TIGR01066	coord: 106..237 score: 1.0
IPR023563	Ribosomal protein L13, conserved site	PROSITE	PS00783	RIBOSOMAL_L13	coord: 202..224 scor
None	No IPR available	PANTHER	PTHR11545:SF7	50S RIBOSOMAL PROTEIN L13, CHLOROPLASTIC	coord: 95..248 score: 8.3E