Lsi03G017320 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G017320
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	VQ motif-containing protein, putative
Location	chr03 : 28710258 .. 28710773 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGCGATTCTGAAGAAACAACGCTCTCATCTATTGCCTAACTCGGCTCGCCCGCCGGCCATGGCGCTGCACACAGCTTCCCACGCCATTTCAAAGCCCAAACCCAAGATTCGTATCATTCACATCTTCGCACCGGAGATCATTAAAACCGACGTTGCTAATTTCAGAGAGCTCGTTCAGAGACTCACCGGAAAGCCCGCTACGGCGGAGGAGAAGATTCTTCCCGTTGAAATTCGGCCGGAAGCGGTGGCGGTGGCGAGTATTGCTGCGGCGTTCGATGATCGGAAGACGGAGATGAGCGGCGGCGGGGGGTGCCGGAGAGTGGTGAAGAAGGAAGATCGGGAAGAGGAAGAGGATGAAGGAGAAGATGAAGAAGATGTGTTAAACGACGTCGTTGGGATGTGGAACGACGTCGTTGGATTTGAAGGGTTTATTGAAGAATTGGGTGAATTTCCGTTGCTTCCTTCGGCTCATCAAATAATGCATGGTTTTGGAGAAACTCAATTTGCTTAA

mRNA sequence

ATGGACGCGATTCTGAAGAAACAACGCTCTCATCTATTGCCTAACTCGGCTCGCCCGCCGGCCATGGCGCTGCACACAGCTTCCCACGCCATTTCAAAGCCCAAACCCAAGATTCGTATCATTCACATCTTCGCACCGGAGATCATTAAAACCGACGTTGCTAATTTCAGAGAGCTCGTTCAGAGACTCACCGGAAAGCCCGCTACGGCGGAGGAGAAGATTCTTCCCGTTGAAATTCGGCCGGAAGCGGTGGCGGTGGCGAGTATTGCTGCGGCGTTCGATGATCGGAAGACGGAGATGAGCGGCGGCGGGGGGTGCCGGAGAGTGGTGAAGAAGGAAGATCGGGAAGAGGAAGAGGATGAAGGAGAAGATGAAGAAGATGTGTTAAACGACGTCGTTGGGATGTGGAACGACGTCGTTGGATTTGAAGGGTTTATTGAAGAATTGGGTGAATTTCCGTTGCTTCCTTCGGCTCATCAAATAATGCATGGTTTTGGAGAAACTCAATTTGCTTAA

Coding sequence (CDS)

ATGGACGCGATTCTGAAGAAACAACGCTCTCATCTATTGCCTAACTCGGCTCGCCCGCCGGCCATGGCGCTGCACACAGCTTCCCACGCCATTTCAAAGCCCAAACCCAAGATTCGTATCATTCACATCTTCGCACCGGAGATCATTAAAACCGACGTTGCTAATTTCAGAGAGCTCGTTCAGAGACTCACCGGAAAGCCCGCTACGGCGGAGGAGAAGATTCTTCCCGTTGAAATTCGGCCGGAAGCGGTGGCGGTGGCGAGTATTGCTGCGGCGTTCGATGATCGGAAGACGGAGATGAGCGGCGGCGGGGGGTGCCGGAGAGTGGTGAAGAAGGAAGATCGGGAAGAGGAAGAGGATGAAGGAGAAGATGAAGAAGATGTGTTAAACGACGTCGTTGGGATGTGGAACGACGTCGTTGGATTTGAAGGGTTTATTGAAGAATTGGGTGAATTTCCGTTGCTTCCTTCGGCTCATCAAATAATGCATGGTTTTGGAGAAACTCAATTTGCTTAA

Protein sequence

MDAILKKQRSHLLPNSARPPAMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELVQRLTGKPATAEEKILPVEIRPEAVAVASIAAAFDDRKTEMSGGGGCRRVVKKEDREEEEDEGEDEEDVLNDVVGMWNDVVGFEGFIEELGEFPLLPSAHQIMHGFGETQFA

Homology

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BLAST of Lsi03G017320 vs. Swiss-Prot
Match: VQ25_ARATH (VQ motif-containing protein 25 OS=Arabidopsis thaliana GN=VQ25 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 8.9e-15
Identity = 70/178 (39.33%), Postives = 89/178 (50.00%), Query Frame = 1


Query: 4   ILKKQRSHLLPNSARPPAMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELVQRL 63
           I +K+RS L        ++A+H  S++I+K KPKIRIIHIFAPEIIKTDVANFRELVQ L
Sbjct: 5   IFEKRRSSL-------SSIAVHKQSYSITKSKPKIRIIHIFAPEIIKTDVANFRELVQSL 64

Query: 64  TGKPATAEEKILPVEIRPEAVAVASIAAAFDDRKTEMSGGGGCRRVVKKEDREEE----- 123
           TGKP                          DD++T  +     RR + +  R+ +     
Sbjct: 65  TGKP--------------------------DDQRTSKAKP---RRDMHRLHRQVQDMINT 124

Query: 124 ----EDEGEDEEDVLN--DVVGMWNDVVG--------------FEGFIEELGEFPLLP 157
               E E  D+E  LN  ++   WN   G              FEGFI+ELGEFP LP
Sbjct: 125 EKLREPEHCDQEFCLNAEELSMTWNGNNGAGESSGGFLNGLGDFEGFIQELGEFPYLP 146

[Close]

BLAST of Lsi03G017320 vs. Swiss-Prot
Match: VQ17_ARATH (VQ motif-containing protein 17 OS=Arabidopsis thaliana GN=VQ17 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.4e-12
Identity = 58/147 (39.46%), Postives = 73/147 (49.66%), Query Frame = 1


Query: 20  PAMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELVQRLTGKPATAEEKI---LP 79
           P +A+H  S  ++K KPKIRIIHIFAPEIIKTDVANFRE+VQ LTGK       +     
Sbjct: 15  PTIAMHKQSRTLTKSKPKIRIIHIFAPEIIKTDVANFREIVQNLTGKQDHHHHDLPHQKG 74

Query: 80  VEIRPEAVAVASIAAAFDDRKTEMSGGGGCRRVVKKEDREEE-------EDEGEDEEDVL 139
           ++  P +          D  K+     G C       D EEE          G++     
Sbjct: 75  LKRNPRSRRSHDHHEVHDMNKSH----GFCIN----SDEEEEGMVSMTWNGNGDESSG-- 134

Query: 140 NDVVGMWNDVVGFEGFIEELGEFPLLP 157
               G  N +   +GFI+ELGEFP LP
Sbjct: 135 ----GFLNGLGDLDGFIQELGEFPYLP 147

[Close]

BLAST of Lsi03G017320 vs. Swiss-Prot
Match: VQ18_ARATH (VQ motif-containing protein 18 OS=Arabidopsis thaliana GN=VQ18 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.6e-11
Identity = 54/149 (36.24%), Postives = 76/149 (51.01%), Query Frame = 1


Query: 22  MALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELVQRLTGKPATAEEKILPVEIRP 81
           ++++  S  ISK KPKIRIIHIFAPE+IKTDV NFR LVQ LTGKPA  E K    + R 
Sbjct: 17  VSMNRNSQVISKIKPKIRIIHIFAPEVIKTDVKNFRSLVQSLTGKPAPGEAK--TGKKRA 76

Query: 82  EAVAVASIAAAFDDRKTEMSGGGGCRRVVKKEDREEEEDEGEDEEDVLNDVVGMWNDVVG 141
           ++          DD +      G    +    + + +E+ G  ++   N      N    
Sbjct: 77  KSRITTPQEPVCDDHQPVNRLSGFTGLLANGGNHQVKEEWGSGDQSTSNT-----NTYFD 136

Query: 142 FEGFIEELGE-----FPLLPSAHQIMHGF 166
            EG I+++GE     FP+  S+   + GF
Sbjct: 137 LEGLIQDVGEDYFSSFPMRSSSSSQVEGF 158

[Close]

BLAST of Lsi03G017320 vs. TrEMBL
Match: A0A0A0LBB1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G807350 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 2.5e-48
Identity = 115/158 (72.78%), Postives = 129/158 (81.65%), Query Frame = 1


Query: 1   MDAIL---KKQRSHLLPNSARPPAMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFR 60
           M+AIL   ++QR HLLP SARP +MALH+ASH ISKPKPKIRIIHIFAPEIIKTDVANFR
Sbjct: 1   MEAILIKKQRQRPHLLPTSARPSSMALHSASHPISKPKPKIRIIHIFAPEIIKTDVANFR 60

Query: 61  ELVQRLTGKP-ATAEEKILPVEIRPEAVAVASIAAAFDDRKTEMSGGGGCRR-VVKKEDR 120
           ELVQRLTGKP AT + KILP EI P        AAAFD+RKTE+  G GCRR +VKKED 
Sbjct: 61  ELVQRLTGKPEATEDGKILPPEIPP--------AAAFDNRKTEIVSGVGCRRRMVKKEDE 120

Query: 121 EEEEDEGEDEEDVLNDVVGMWNDVVGFEGFIEELGEFP 154
            +EEDE  +EE++L DVVGMWNDVVGFEGFI+ELGEFP
Sbjct: 121 YQEEDE--EEEEMLEDVVGMWNDVVGFEGFIQELGEFP 148

[Close]

BLAST of Lsi03G017320 vs. TrEMBL
Match: A0A061EXT4_THECC (VQ motif-containing protein, putative OS=Theobroma cacao GN=TCM_024904 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 6.8e-22
Identity = 83/195 (42.56%), Postives = 104/195 (53.33%), Query Frame = 1


Query: 1   MDAILKKQRSHLLPNSARPPAMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELV 60
           M+ I+ + ++ + P++  P A+++H  S  ISK KPKIRIIHIFAPEIIKTDVANFRELV
Sbjct: 46  MENIMIRNQTRMPPST--PSALSIHKDSQTISKAKPKIRIIHIFAPEIIKTDVANFRELV 105

Query: 61  QRLTGKPAT---------------AEEKILPVEIRPEAVAVASIAAAFDDRKTEMSGGGG 120
           QRLTGKPA                 E +I     +P A AVA        +K E+  G  
Sbjct: 106 QRLTGKPAQEKGCKKKARIGRRDHQEPRITRFCDKPVAAAVA--------KKMELRTGFL 165

Query: 121 CRRVVKKEDREEEEDEGEDEEDVLNDVVGMWND------VVGF---EGFIEELGEFPLLP 172
                ++  +EEE               GMWND      + GF   +GFI+ELGEFPLLP
Sbjct: 166 AGLETRERVKEEE---------------GMWNDENSGGFLSGFGDLDGFIQELGEFPLLP 215

[Close]

BLAST of Lsi03G017320 vs. TrEMBL
Match: A0A0D2RRJ1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G068000 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.8e-20
Identity = 78/180 (43.33%), Postives = 110/180 (61.11%), Query Frame = 1


Query: 1   MDAILKKQRSHLLPNSARPPAMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELV 60
           M+ ++ + ++ + P++  PP +++H  S  ISKPKPKIRIIHIFAPEIIKTDVANFRELV
Sbjct: 1   MENLMIRNQTRMPPSNPSPP-LSIHRDSKTISKPKPKIRIIHIFAPEIIKTDVANFRELV 60

Query: 61  QRLTGKPATAEEKILPVEIRPE-AVAVASIA-AAFDDRKTEMSGGGGC-----RRVVKKE 120
           QRLTGKP   +EK    + R + +    S++ AA   +K E+  G         RVVK+E
Sbjct: 61  QRLTGKP--PQEKGSKRKPRKDHSFCDKSVSTAAMASKKMEVRSGFVLGLEMRERVVKEE 120

Query: 121 DREEEEDEGEDEEDVLNDVVGMWNDVVGFEGFIEELGEFPLLP--SAHQIMHGFGETQFA 172
           +     + G++    L D+          +GFI++LGEFPLLP  +++  MHGF E Q A
Sbjct: 121 EGMLWGNIGDNSSGFLGDL----------DGFIQQLGEFPLLPLDASNDHMHGFEEVQLA 167

[Close]

BLAST of Lsi03G017320 vs. TrEMBL
Match: B9HAC3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s20650g PE=4 SV=2)

HSP 1 Score: 105.1 bits (261), Expect = 8.4e-20
Identity = 74/182 (40.66%), Postives = 96/182 (52.75%), Query Frame = 1


Query: 1   MDAILKKQRSHLLPNSARPPA-MALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFREL 60
           M+ ++ ++R   +P+S  P + + +H  SH I K KPKIRIIHIFAPEIIKTDVANFREL
Sbjct: 1   MEDLMMRKRPAFMPSSITPASPLTMHRDSHTIDKVKPKIRIIHIFAPEIIKTDVANFREL 60

Query: 61  VQRLTGKPAT----AEEKILPVEIRPEAVAVASIAAAFDD------RKTEMSGGGGCRRV 120
           VQRLTGKP       ++K      + +     +      D      +K E+  G G    
Sbjct: 61  VQRLTGKPTVQKGGCKKKATSARTQDQPRNCNNNNYYLCDNKPVTTKKVELRSGFGSTLG 120

Query: 121 VKKEDREEEEDEGEDEEDVLNDVVGMWNDVVGFEGFIEELGEFPLLPSAHQIMHGFGETQ 172
            ++  +EEEE              G        +GFI+ELGEFPLLP     M GFGETQ
Sbjct: 121 SRERVKEEEEIWNGPNSG------GFLGGFTDLDGFIQELGEFPLLPMDANHMQGFGETQ 176

[Close]

BLAST of Lsi03G017320 vs. TrEMBL
Match: B9SXI6_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0503670 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.1e-19
Identity = 82/198 (41.41%), Postives = 102/198 (51.52%), Query Frame = 1


Query: 1   MDAILKKQR-------SHLLPNSARPPAMALHTASHAISKPKPKIRIIHIFAPEIIKTDV 60
           M  ++KKQ+       SH    S+    +++H  S  ISK KPKIRIIHIFAPEIIKTDV
Sbjct: 5   MKMMMKKQQQQVPCVSSHRTTTSS---PLSMHKDSQTISKVKPKIRIIHIFAPEIIKTDV 64

Query: 61  ANFRELVQRLTGKPATAEEKILPVEIRPEAV-----------AVASIAAAFDDRKTEMSG 120
           ANFRELVQRLTGKPA  ++       +P  V              +   A   +K E+  
Sbjct: 65  ANFRELVQRLTGKPAADQKGSKSKIKKPRRVDHHHQHHHHHHQPRTNLPAVVTKKVEIRS 124

Query: 121 GGGCRRVVKKEDREEEEDEGEDEEDVLNDVVGMWN------DVVGF---EGFIEELGEFP 172
           G G   +VKKE+ EEE                MWN       + GF   +GFI+EL EF 
Sbjct: 125 GLG---MVKKEEEEEE---------------AMWNCANSGGFLAGFADLDGFIQELDEFS 181

[Close]

BLAST of Lsi03G017320 vs. TAIR10
Match: AT3G58000.1 (AT3G58000.1 VQ motif-containing protein)

HSP 1 Score: 81.6 bits (200), Expect = 5.0e-16
Identity = 70/178 (39.33%), Postives = 89/178 (50.00%), Query Frame = 1


Query: 4   ILKKQRSHLLPNSARPPAMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELVQRL 63
           I +K+RS L        ++A+H  S++I+K KPKIRIIHIFAPEIIKTDVANFRELVQ L
Sbjct: 5   IFEKRRSSL-------SSIAVHKQSYSITKSKPKIRIIHIFAPEIIKTDVANFRELVQSL 64

Query: 64  TGKPATAEEKILPVEIRPEAVAVASIAAAFDDRKTEMSGGGGCRRVVKKEDREEE----- 123
           TGKP                          DD++T  +     RR + +  R+ +     
Sbjct: 65  TGKP--------------------------DDQRTSKAKP---RRDMHRLHRQVQDMINT 124

Query: 124 ----EDEGEDEEDVLN--DVVGMWNDVVG--------------FEGFIEELGEFPLLP 157
               E E  D+E  LN  ++   WN   G              FEGFI+ELGEFP LP
Sbjct: 125 EKLREPEHCDQEFCLNAEELSMTWNGNNGAGESSGGFLNGLGDFEGFIQELGEFPYLP 146

[Close]

BLAST of Lsi03G017320 vs. TAIR10
Match: AT2G42140.1 (AT2G42140.1 VQ motif-containing protein)

HSP 1 Score: 73.6 bits (179), Expect = 1.4e-13
Identity = 58/147 (39.46%), Postives = 73/147 (49.66%), Query Frame = 1


Query: 20  PAMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELVQRLTGKPATAEEKI---LP 79
           P +A+H  S  ++K KPKIRIIHIFAPEIIKTDVANFRE+VQ LTGK       +     
Sbjct: 15  PTIAMHKQSRTLTKSKPKIRIIHIFAPEIIKTDVANFREIVQNLTGKQDHHHHDLPHQKG 74

Query: 80  VEIRPEAVAVASIAAAFDDRKTEMSGGGGCRRVVKKEDREEE-------EDEGEDEEDVL 139
           ++  P +          D  K+     G C       D EEE          G++     
Sbjct: 75  LKRNPRSRRSHDHHEVHDMNKSH----GFCIN----SDEEEEGMVSMTWNGNGDESSG-- 134

Query: 140 NDVVGMWNDVVGFEGFIEELGEFPLLP 157
               G  N +   +GFI+ELGEFP LP
Sbjct: 135 ----GFLNGLGDLDGFIQELGEFPYLP 147

[Close]

BLAST of Lsi03G017320 vs. TAIR10
Match: AT2G44340.1 (AT2G44340.1 VQ motif-containing protein)

HSP 1 Score: 70.9 bits (172), Expect = 8.8e-13
Identity = 54/149 (36.24%), Postives = 76/149 (51.01%), Query Frame = 1


Query: 22  MALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELVQRLTGKPATAEEKILPVEIRP 81
           ++++  S  ISK KPKIRIIHIFAPE+IKTDV NFR LVQ LTGKPA  E K    + R 
Sbjct: 17  VSMNRNSQVISKIKPKIRIIHIFAPEVIKTDVKNFRSLVQSLTGKPAPGEAK--TGKKRA 76

Query: 82  EAVAVASIAAAFDDRKTEMSGGGGCRRVVKKEDREEEEDEGEDEEDVLNDVVGMWNDVVG 141
           ++          DD +      G    +    + + +E+ G  ++   N      N    
Sbjct: 77  KSRITTPQEPVCDDHQPVNRLSGFTGLLANGGNHQVKEEWGSGDQSTSNT-----NTYFD 136

Query: 142 FEGFIEELGE-----FPLLPSAHQIMHGF 166
            EG I+++GE     FP+  S+   + GF
Sbjct: 137 LEGLIQDVGEDYFSSFPMRSSSSSQVEGF 158

[Close]

BLAST of Lsi03G017320 vs. TAIR10
Match: AT3G60090.1 (AT3G60090.1 VQ motif-containing protein)

HSP 1 Score: 63.5 bits (153), Expect = 1.4e-10
Identity = 32/40 (80.00%), Postives = 33/40 (82.50%), Query Frame = 1


Query: 28 SHAISKPKPKIRIIHIFAPEIIKTDVANFRELVQRLTGKP 68
          S  I+K KPKIRIIHIFAPEII TDV NFR LVQ LTGKP
Sbjct: 35 SQIITKIKPKIRIIHIFAPEIINTDVKNFRTLVQSLTGKP 74

[Close]

BLAST of Lsi03G017320 vs. NCBI nr
Match: gi|449437914|ref|XP_004136735.1| (PREDICTED: VQ motif-containing protein 25-like [Cucumis sativus])

HSP 1 Score: 234.2 bits (596), Expect = 1.7e-58
Identity = 131/176 (74.43%), Postives = 146/176 (82.95%), Query Frame = 1


Query: 1   MDAIL---KKQRSHLLPNSARPPAMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFR 60
           M+AIL   ++QR HLLP SARP +MALH+ASH ISKPKPKIRIIHIFAPEIIKTDVANFR
Sbjct: 1   MEAILIKKQRQRPHLLPTSARPSSMALHSASHPISKPKPKIRIIHIFAPEIIKTDVANFR 60

Query: 61  ELVQRLTGKP-ATAEEKILPVEIRPEAVAVASIAAAFDDRKTEMSGGGGC-RRVVKKEDR 120
           ELVQRLTGKP AT + KILP EI P        AAAFD+RKTE+  G GC RR+VKKED 
Sbjct: 61  ELVQRLTGKPEATEDGKILPPEIPP--------AAAFDNRKTEIVSGVGCRRRMVKKEDE 120

Query: 121 EEEEDEGEDEEDVLNDVVGMWNDVVGFEGFIEELGEFPLLPSAHQIMHGFGETQFA 172
            +EED  E+EE++L DVVGMWNDVVGFEGFI+ELGEFPL+PSAHQIMHGF ETQFA
Sbjct: 121 YQEED--EEEEEMLEDVVGMWNDVVGFEGFIQELGEFPLIPSAHQIMHGFEETQFA 166

[Close]

BLAST of Lsi03G017320 vs. NCBI nr
Match: gi|659084764|ref|XP_008443061.1| (PREDICTED: nucleosome assembly protein 1-like 5 [Cucumis melo])

HSP 1 Score: 225.3 bits (573), Expect = 8.0e-56
Identity = 127/187 (67.91%), Postives = 143/187 (76.47%), Query Frame = 1


Query: 1   MDAILK--KQRSHLLPNSARPPAMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRE 60
           MDAILK  +QR HLLP S RP  M LH+ASHAISKPKPKIRIIHIFAPEIIKTDVANFRE
Sbjct: 1   MDAILKNQRQRPHLLPTSPRPSTMPLHSASHAISKPKPKIRIIHIFAPEIIKTDVANFRE 60

Query: 61  LVQRLTGKP---ATAEEKILPVEIRPEAVAVASIAAAFDDRKTEMSGGGGCRRVVKKEDR 120
           LVQRLTGKP    T E+KILP +I          AAAFD+RKTEM     CRR+VKKED 
Sbjct: 61  LVQRLTGKPEAITTQEDKILPPQI--------PAAAAFDNRKTEMV---SCRRMVKKEDE 120

Query: 121 EEEED------------EGEDEEDVLNDVVGMWNDVVGFEGFIEELGEFPLLPSAHQIMH 171
           ++EED            EGE+EE++L++VVGMWNDVVGFEGFI+ELGEFPL+PSAHQIMH
Sbjct: 121 DQEEDYDEEEEEEEGEGEGEEEEEMLDEVVGMWNDVVGFEGFIQELGEFPLIPSAHQIMH 176

[Close]

BLAST of Lsi03G017320 vs. NCBI nr
Match: gi|700204172|gb|KGN59305.1| (hypothetical protein Csa_3G807350 [Cucumis sativus])

HSP 1 Score: 199.9 bits (507), Expect = 3.6e-48
Identity = 115/158 (72.78%), Postives = 129/158 (81.65%), Query Frame = 1


Query: 1   MDAIL---KKQRSHLLPNSARPPAMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFR 60
           M+AIL   ++QR HLLP SARP +MALH+ASH ISKPKPKIRIIHIFAPEIIKTDVANFR
Sbjct: 1   MEAILIKKQRQRPHLLPTSARPSSMALHSASHPISKPKPKIRIIHIFAPEIIKTDVANFR 60

Query: 61  ELVQRLTGKP-ATAEEKILPVEIRPEAVAVASIAAAFDDRKTEMSGGGGCRR-VVKKEDR 120
           ELVQRLTGKP AT + KILP EI P        AAAFD+RKTE+  G GCRR +VKKED 
Sbjct: 61  ELVQRLTGKPEATEDGKILPPEIPP--------AAAFDNRKTEIVSGVGCRRRMVKKEDE 120

Query: 121 EEEEDEGEDEEDVLNDVVGMWNDVVGFEGFIEELGEFP 154
            +EEDE  +EE++L DVVGMWNDVVGFEGFI+ELGEFP
Sbjct: 121 YQEEDE--EEEEMLEDVVGMWNDVVGFEGFIQELGEFP 148

[Close]

BLAST of Lsi03G017320 vs. NCBI nr
Match: gi|590636957|ref|XP_007028986.1| (VQ motif-containing protein, putative [Theobroma cacao])

HSP 1 Score: 112.1 bits (279), Expect = 9.8e-22
Identity = 83/195 (42.56%), Postives = 104/195 (53.33%), Query Frame = 1


Query: 1   MDAILKKQRSHLLPNSARPPAMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELV 60
           M+ I+ + ++ + P++  P A+++H  S  ISK KPKIRIIHIFAPEIIKTDVANFRELV
Sbjct: 46  MENIMIRNQTRMPPST--PSALSIHKDSQTISKAKPKIRIIHIFAPEIIKTDVANFRELV 105

Query: 61  QRLTGKPAT---------------AEEKILPVEIRPEAVAVASIAAAFDDRKTEMSGGGG 120
           QRLTGKPA                 E +I     +P A AVA        +K E+  G  
Sbjct: 106 QRLTGKPAQEKGCKKKARIGRRDHQEPRITRFCDKPVAAAVA--------KKMELRTGFL 165

Query: 121 CRRVVKKEDREEEEDEGEDEEDVLNDVVGMWND------VVGF---EGFIEELGEFPLLP 172
                ++  +EEE               GMWND      + GF   +GFI+ELGEFPLLP
Sbjct: 166 AGLETRERVKEEE---------------GMWNDENSGGFLSGFGDLDGFIQELGEFPLLP 215

[Close]

BLAST of Lsi03G017320 vs. NCBI nr
Match: gi|743862652|ref|XP_010943593.1| (PREDICTED: uncharacterized protein LOC105061282 [Elaeis guineensis])

HSP 1 Score: 108.6 bits (270), Expect = 1.1e-20
Identity = 71/153 (46.41%), Postives = 93/153 (60.78%), Query Frame = 1


Query: 18  RPPAMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELVQRLTGKP---ATAEEKI 77
           RPP +A+H  SHAI+K KPKIRI+HIFAPEIIKTD ANFRELVQRLTGKP     A++K 
Sbjct: 16  RPPTLAMHDNSHAITKLKPKIRIVHIFAPEIIKTDPANFRELVQRLTGKPTKRTAAKKKT 75

Query: 78  LPVEIRPEAVAVASIAAAFDDRKTEMSGGGGCRRVVKKEDREEEEDEGEDEEDVLNDVVG 137
           +PV I  EA+           ++   + GG  R  VK+E  EEE +  E E  V N+  G
Sbjct: 76  IPVTINGEALPRCKRFEVVGSQQENENSGG--RDGVKRE-LEEEVEVVEKELRVENNTGG 135

Query: 138 MWNDVVGFEGFIEELGEFPLLPSAHQIMHGFGE 168
            ++D+   + F++ L + PL P +   M   GE
Sbjct: 136 FFHDLGEIDSFLQGLSDLPLPPLSSSPMDTIGE 165

The following BLAST results are available for this feature:

BLAST of Lsi03G017320 vs. Swiss-Prot


Match Name	E-value	Identity	Description
VQ25_ARATH	8.9e-15	39.33	VQ motif-containing protein 25 OS=Arabidopsis thaliana GN=VQ25 PE=3 SV=1	[more]
VQ17_ARATH	2.4e-12	39.46	VQ motif-containing protein 17 OS=Arabidopsis thaliana GN=VQ17 PE=2 SV=1	[more]
VQ18_ARATH	1.6e-11	36.24	VQ motif-containing protein 18 OS=Arabidopsis thaliana GN=VQ18 PE=3 SV=1	[more]

BLAST of Lsi03G017320 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBB1_CUCSA	2.5e-48	72.78	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G807350 PE=4 SV=1	[more]
A0A061EXT4_THECC	6.8e-22	42.56	VQ motif-containing protein, putative OS=Theobroma cacao GN=TCM_024904 PE=4 SV=1	[more]
A0A0D2RRJ1_GOSRA	3.8e-20	43.33	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G068000 PE=4 SV=1	[more]
B9HAC3_POPTR	8.4e-20	40.66	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s20650g PE=4 SV=2	[more]
B9SXI6_RICCO	1.1e-19	41.41	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0503670 PE=4 SV=1	[more]

BLAST of Lsi03G017320 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G58000.1	5.0e-16	39.33	VQ motif-containing protein	[more]
AT2G42140.1	1.4e-13	39.46	VQ motif-containing protein	[more]
AT2G44340.1	8.8e-13	36.24	VQ motif-containing protein	[more]
AT3G60090.1	1.4e-10	80.00	VQ motif-containing protein	[more]

BLAST of Lsi03G017320 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449437914\|ref\|XP_004136735.1\|	1.7e-58	74.43	PREDICTED: VQ motif-containing protein 25-like [Cucumis sativus]	[more]
gi\|659084764\|ref\|XP_008443061.1\|	8.0e-56	67.91	PREDICTED: nucleosome assembly protein 1-like 5 [Cucumis melo]	[more]
gi\|700204172\|gb\|KGN59305.1\|	3.6e-48	72.78	hypothetical protein Csa_3G807350 [Cucumis sativus]	[more]
gi\|590636957\|ref\|XP_007028986.1\|	9.8e-22	42.56	VQ motif-containing protein, putative [Theobroma cacao]	[more]
gi\|743862652\|ref\|XP_010943593.1\|	1.1e-20	46.41	PREDICTED: uncharacterized protein LOC105061282 [Elaeis guineensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008889	VQ

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G017320.1	Lsi03G017320.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 43..69 score: 4.9
None	No IPR available	PANTHER	PTHR33143	FAMILY NOT NAMED	coord: 22..156 score: 7.7
None	No IPR available	PANTHER	PTHR33143:SF12	SUBFAMILY NOT NAMED	coord: 22..156 score: 7.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi03G017320	Csa3G807350	Cucumber (Chinese Long) v2	culsiB186
Lsi03G017320	CSPI03G36510	Wild cucumber (PI 183967)	cpilsiB184
Lsi03G017320	Cucsa.242710	Cucumber (Gy14) v1	cgylsiB402
Lsi03G017320	CmaCh14G004200	Cucurbita maxima (Rimu)	cmalsiB242
Lsi03G017320	CmoCh14G004240	Cucurbita moschata (Rifu)	cmolsiB230
Lsi03G017320	Cla017540	Watermelon (97103) v1	lsiwmB240
Lsi03G017320	MELO3C009629	Melon (DHL92) v3.5.1	lsimeB260
Lsi03G017320	ClCG10G017500	Watermelon (Charleston Gray)	lsiwcgB219
Lsi03G017320	MELO3C009629.2	Melon (DHL92) v3.6.1	lsimedB273
Lsi03G017320	Cla97C10G200360	Watermelon (97103) v2	lsiwmbB218
Lsi03G017320	Bhi11G002125	Wax gourd	lsiwgoB301
Lsi03G017320	CsGy3G033970	Cucumber (Gy14) v2	cgyblsiB171
Lsi03G017320	Carg03567	Silver-seed gourd	carlsiB225
Lsi03G017320	CsaV3_3G038860	Cucumber (Chinese Long) v3	cuclsiB203

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G017320	Bottle gourd (USVL1VR-Ls)	lsilsiB092
Lsi03G017320	Cucumber (Gy14) v1	cgylsiB031
Lsi03G017320	Cucurbita maxima (Rimu)	cmalsiB352
Lsi03G017320	Cucurbita maxima (Rimu)	cmalsiB751
Lsi03G017320	Cucurbita moschata (Rifu)	cmolsiB341
Lsi03G017320	Cucurbita moschata (Rifu)	cmolsiB744
Lsi03G017320	Cucurbita pepo (Zucchini)	cpelsiB503
Lsi03G017320	Wild cucumber (PI 183967)	cpilsiB535
Lsi03G017320	Cucumber (Chinese Long) v2	culsiB521
Lsi03G017320	Melon (DHL92) v3.5.1	lsimeB249
Lsi03G017320	Silver-seed gourd	carlsiB143