CmoCh14G004240 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh14G004240
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	VQ motif-containing protein, putative
Location	Cmo_Chr14 : 2019164 .. 2019670 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGCGATTATGAAGAAACGGGCTCTGTTGCAGAACTCAGCGCGCCCGGCGGCGATGGCGGTGCACGCAGCTTCACACGCCATTTCGAAGCCCAAACCGAAGATTCGTATCATTCACATCTTCGCACCGGAGATTATTAAAACCGACGTCGCTAATTTCCGCGAGCTCGTTCAGAGACTGACTGGAAAGCCGGCGACGGCGGAGGAGAAGATTGTTCCGCCTCAAATTCCTCCGGTAGCAGTGGCGGATATTGCGACGGCGTTTGATCATCGGAAGTCGGAGATGGGCGGCGGGGAGTGTCGGAGAGTGAAGACGGAAGATCGGGAAGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAGAGGCGTTGAGCGACGTCGTTGGGTTGTGGAACGACGTCGTTGGGTTCGAAGGGTTTATTGAAGAATTGGGTGAAATTCCGCTTCTTCCTTCTGCTCACCAAATAATGCATGGTTTTGAAGAAACTCAATTTGCTTGA

mRNA sequence

ATGGAGGCGATTATGAAGAAACGGGCTCTGTTGCAGAACTCAGCGCGCCCGGCGGCGATGGCGGTGCACGCAGCTTCACACGCCATTTCGAAGCCCAAACCGAAGATTCGTATCATTCACATCTTCGCACCGGAGATTATTAAAACCGACGTCGCTAATTTCCGCGAGCTCGTTCAGAGACTGACTGGAAAGCCGGCGACGGCGGAGGAGAAGATTGTTCCGCCTCAAATTCCTCCGGTAGCAGTGGCGGATATTGCGACGGCGTTTGATCATCGGAAGTCGGAGATGGGCGGCGGGGAGTGTCGGAGAGTGAAGACGGAAGATCGGGAAGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAGAGGCGTTGAGCGACGTCGTTGGGTTGTGGAACGACGTCGTTGGGTTCGAAGGGTTTATTGAAGAATTGGGTGAAATTCCGCTTCTTCCTTCTGCTCACCAAATAATGCATGGTTTTGAAGAAACTCAATTTGCTTGA

Coding sequence (CDS)

ATGGAGGCGATTATGAAGAAACGGGCTCTGTTGCAGAACTCAGCGCGCCCGGCGGCGATGGCGGTGCACGCAGCTTCACACGCCATTTCGAAGCCCAAACCGAAGATTCGTATCATTCACATCTTCGCACCGGAGATTATTAAAACCGACGTCGCTAATTTCCGCGAGCTCGTTCAGAGACTGACTGGAAAGCCGGCGACGGCGGAGGAGAAGATTGTTCCGCCTCAAATTCCTCCGGTAGCAGTGGCGGATATTGCGACGGCGTTTGATCATCGGAAGTCGGAGATGGGCGGCGGGGAGTGTCGGAGAGTGAAGACGGAAGATCGGGAAGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAGAGGCGTTGAGCGACGTCGTTGGGTTGTGGAACGACGTCGTTGGGTTCGAAGGGTTTATTGAAGAATTGGGTGAAATTCCGCTTCTTCCTTCTGCTCACCAAATAATGCATGGTTTTGAAGAAACTCAATTTGCTTGA

Homology

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BLAST of CmoCh14G004240 vs. Swiss-Prot
Match: VQ25_ARATH (VQ motif-containing protein 25 OS=Arabidopsis thaliana GN=VQ25 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.8e-13
Identity = 64/147 (43.54%), Postives = 79/147 (53.74%), Query Frame = 1


Query: 18  AAMAVHAASHAISKPKPKIRIIHIFAPEIIKTDVANFRELVQRLTGKPATAEEKIVPPQI 77
           +++AVH  S++I+K KPKIRIIHIFAPEIIKTDVANFRELVQ LTGKP         P+ 
Sbjct: 14  SSIAVHKQSYSITKSKPKIRIIHIFAPEIIKTDVANFRELVQSLTGKPDDQRTSKAKPR- 73

Query: 78  PPVAVADIATAFDHRKSEMGGGECRRVKTEDREEEEEEEEEEEEEEEALS---------- 137
                 D+     HR+ +        + TE   E E  ++E     E LS          
Sbjct: 74  -----RDMHRL--HRQVQ------DMINTEKLREPEHCDQEFCLNAEELSMTWNGNNGAG 133

Query: 138 -DVVGLWNDVVGFEGFIEELGEIPLLP 154
               G  N +  FEGFI+ELGE P LP
Sbjct: 134 ESSGGFLNGLGDFEGFIQELGEFPYLP 146

[Close]

BLAST of CmoCh14G004240 vs. Swiss-Prot
Match: VQ17_ARATH (VQ motif-containing protein 17 OS=Arabidopsis thaliana GN=VQ17 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.8e-10
Identity = 59/166 (35.54%), Postives = 78/166 (46.99%), Query Frame = 1


Query: 4   IMKKRALLQNSARPAAMAVHAASHAISKPKPKIRIIHIFAPEIIKTDVANFRELVQRLTG 63
           + K+R+L         +A+H  S  ++K KPKIRIIHIFAPEIIKTDVANFRE+VQ LTG
Sbjct: 8   VQKRRSL-------PTIAMHKQSRTLTKSKPKIRIIHIFAPEIIKTDVANFREIVQNLTG 67

Query: 64  KPATAEEKIVPPQIPPVAVADIATAFDHRKSEMGGGECRRVKTEDREEEEEEEE------ 123
           K       +                  H+K        RR  + D  E  +  +      
Sbjct: 68  KQDHHHHDL-----------------PHQKGLKRNPRSRR--SHDHHEVHDMNKSHGFCI 127

Query: 124 EEEEEEEALSDVV----------GLWNDVVGFEGFIEELGEIPLLP 154
             +EEEE +  +           G  N +   +GFI+ELGE P LP
Sbjct: 128 NSDEEEEGMVSMTWNGNGDESSGGFLNGLGDLDGFIQELGEFPYLP 147

[Close]

BLAST of CmoCh14G004240 vs. Swiss-Prot
Match: VQ18_ARATH (VQ motif-containing protein 18 OS=Arabidopsis thaliana GN=VQ18 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 7.9e-08
Identity = 57/157 (36.31%), Postives = 74/157 (47.13%), Query Frame = 1


Query: 20  MAVHAASHAISKPKPKIRIIHIFAPEIIKTDVANFRELVQRLTGKPATAEEK-------- 79
           ++++  S  ISK KPKIRIIHIFAPE+IKTDV NFR LVQ LTGKPA  E K        
Sbjct: 17  VSMNRNSQVISKIKPKIRIIHIFAPEVIKTDVKNFRSLVQSLTGKPAPGEAKTGKKRAKS 76

Query: 80  -IVPPQIPPVAVADIATAFDHRKSEMGGGECRRVKTEDREEEEEEEEEEEEEEEALSDVV 139
            I  PQ P   V D     DH+      G    +      + +EE    ++         
Sbjct: 77  RITTPQEP---VCD-----DHQPVNRLSGFTGLLANGGNHQVKEEWGSGDQSTSNT---- 136

Query: 140 GLWNDVVGFEGFIEELGE-----IPLLPSAHQIMHGF 163
              N     EG I+++GE      P+  S+   + GF
Sbjct: 137 ---NTYFDLEGLIQDVGEDYFSSFPMRSSSSSQVEGF 158

[Close]

BLAST of CmoCh14G004240 vs. TrEMBL
Match: A0A0A0LBB1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G807350 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 9.3e-40
Identity = 104/157 (66.24%), Postives = 123/157 (78.34%), Query Frame = 1


Query: 1   MEAIMKKRA-----LLQNSARPAAMAVHAASHAISKPKPKIRIIHIFAPEIIKTDVANFR 60
           MEAI+ K+      LL  SARP++MA+H+ASH ISKPKPKIRIIHIFAPEIIKTDVANFR
Sbjct: 1   MEAILIKKQRQRPHLLPTSARPSSMALHSASHPISKPKPKIRIIHIFAPEIIKTDVANFR 60

Query: 61  ELVQRLTGKP-ATAEEKIVPPQIPPVAVADIATAFDHRKSE-MGGGECRRVKTEDREEEE 120
           ELVQRLTGKP AT + KI+PP+IPP      A AFD+RK+E + G  CRR      ++E+
Sbjct: 61  ELVQRLTGKPEATEDGKILPPEIPP------AAAFDNRKTEIVSGVGCRRRMV---KKED 120

Query: 121 EEEEEEEEEEEALSDVVGLWNDVVGFEGFIEELGEIP 151
           E +EE+EEEEE L DVVG+WNDVVGFEGFI+ELGE P
Sbjct: 121 EYQEEDEEEEEMLEDVVGMWNDVVGFEGFIQELGEFP 148

[Close]

BLAST of CmoCh14G004240 vs. TrEMBL
Match: A0A061EXT4_THECC (VQ motif-containing protein, putative OS=Theobroma cacao GN=TCM_024904 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 5.1e-22
Identity = 82/187 (43.85%), Postives = 100/187 (53.48%), Query Frame = 1


Query: 1   MEAIMKKRALLQNSARPAAMAVHAASHAISKPKPKIRIIHIFAPEIIKTDVANFRELVQR 60
           ME IM +       + P+A+++H  S  ISK KPKIRIIHIFAPEIIKTDVANFRELVQR
Sbjct: 46  MENIMIRNQTRMPPSTPSALSIHKDSQTISKAKPKIRIIHIFAPEIIKTDVANFRELVQR 105

Query: 61  LTGKPA----------TAEEKIVPPQIPPVAVADIATAFDHRKSEMGGGECRRVKTEDRE 120
           LTGKPA                  P+I       +A A   +K E+  G    ++T +R 
Sbjct: 106 LTGKPAQEKGCKKKARIGRRDHQEPRITRFCDKPVAAAV-AKKMELRTGFLAGLETRERV 165

Query: 121 EEEEEEEEEEEEEEALSDVVGLWND------VVGF---EGFIEELGEIPLLPSAHQIMHG 169
           +EEE                G+WND      + GF   +GFI+ELGE PLLP     MHG
Sbjct: 166 KEEE----------------GMWNDENSGGFLSGFGDLDGFIQELGEFPLLPLDASHMHG 215

[Close]

BLAST of CmoCh14G004240 vs. TrEMBL
Match: A0A0D2RRJ1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G068000 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 9.4e-16
Identity = 74/173 (42.77%), Postives = 99/173 (57.23%), Query Frame = 1


Query: 1   MEAIMKKRALLQNSARPAA-MAVHAASHAISKPKPKIRIIHIFAPEIIKTDVANFRELVQ 60
           ME +M +       + P+  +++H  S  ISKPKPKIRIIHIFAPEIIKTDVANFRELVQ
Sbjct: 1   MENLMIRNQTRMPPSNPSPPLSIHRDSKTISKPKPKIRIIHIFAPEIIKTDVANFRELVQ 60

Query: 61  RLTGKPATAE-EKIVPPQIPPVAVADIAT-AFDHRKSEMGGGECRRVKTEDREEEEEEEE 120
           RLTGKP   +  K  P +        ++T A   +K E+  G    ++  +R  +EEE  
Sbjct: 61  RLTGKPPQEKGSKRKPRKDHSFCDKSVSTAAMASKKMEVRSGFVLGLEMRERVVKEEEGM 120

Query: 121 EEEEEEEALSDVVGLWNDVVGFEGFIEELGEIPLLP--SAHQIMHGFEETQFA 169
                 +  S  +G        +GFI++LGE PLLP  +++  MHGFEE Q A
Sbjct: 121 LWGNIGDNSSGFLG------DLDGFIQQLGEFPLLPLDASNDHMHGFEEVQLA 167

[Close]

BLAST of CmoCh14G004240 vs. TrEMBL
Match: A0A067FXP8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g044113mg PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.7e-15
Identity = 69/154 (44.81%), Postives = 82/154 (53.25%), Query Frame = 1


Query: 22  VHAASHAISKPKPKIRIIHIFAPEIIKTDVANFRELVQRLTGKPA--------------- 81
           +H  SH ISK KPKIRIIHIFAPEIIKTDV NFRELVQRLTGKP                
Sbjct: 1   MHKNSHPISKTKPKIRIIHIFAPEIIKTDVENFRELVQRLTGKPTEHDHHHHHQKVGKKR 60

Query: 82  ----TAEEKIVPPQIPPVAVADIATAFDHRKSEMGGGECRRVKTEDREEEEEEEEEEEEE 141
               T EE+  P     +   D+ T     +S   G E R          E+ +EEEEEE
Sbjct: 61  PRNPTREEE--PRSTSVLEKPDLVTKNVELRSTFFGFETR----------EKVKEEEEEE 120

Query: 142 EEAL---SDVVGLWNDVVGFEGFIEELGEIPLLP 154
           E+ L   ++  G  +    F+GFI+EL E PLLP
Sbjct: 121 EQILWNGANSGGFLHGFADFDGFIQELDEFPLLP 142

[Close]

BLAST of CmoCh14G004240 vs. TrEMBL
Match: B9IHZ2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s04530g PE=4 SV=2)

HSP 1 Score: 89.4 bits (220), Expect = 4.7e-15
Identity = 71/175 (40.57%), Postives = 94/175 (53.71%), Query Frame = 1


Query: 2   EAIMKKR--ALLQNSARPAAMAVHAASHAISKPKPKIRIIHIFAPEIIKTDVANFRELVQ 61
           E +M+K+  A +  S  P+ + +H  SH I+K KPKIRIIHIFAPEIIKTD ANFRELVQ
Sbjct: 3   ELMMRKQPAACIPTSITPSPITMHKNSHTIAKVKPKIRIIHIFAPEIIKTDAANFRELVQ 62

Query: 62  RLTGKPATAEEKIVPPQIPPVAVADIATAFDHRKSEMGGG---ECRRVKTEDREEEEEEE 121
           RLTGKP                            S+  GG   + RR +T+D+      +
Sbjct: 63  RLTGKP----------------------------SDQKGGCRQKPRRARTQDQPRNCNSD 122

Query: 122 EEEEEEEEALSDVVGLWNDVVGF---EGFIEELGEIPLLPSAHQIMHGFEETQFA 169
             EE+ EE + +     + + GF   +GFI+ELGE PLLP     +H   +TQ A
Sbjct: 123 LCEEKPEEEMWNGAYSGSFLGGFTDLDGFIQELGEFPLLPMDANHIHELGQTQLA 149

[Close]

BLAST of CmoCh14G004240 vs. TAIR10
Match: AT3G58000.1 (AT3G58000.1 VQ motif-containing protein)

HSP 1 Score: 76.6 bits (187), Expect = 1.6e-14
Identity = 64/147 (43.54%), Postives = 79/147 (53.74%), Query Frame = 1


Query: 18  AAMAVHAASHAISKPKPKIRIIHIFAPEIIKTDVANFRELVQRLTGKPATAEEKIVPPQI 77
           +++AVH  S++I+K KPKIRIIHIFAPEIIKTDVANFRELVQ LTGKP         P+ 
Sbjct: 14  SSIAVHKQSYSITKSKPKIRIIHIFAPEIIKTDVANFRELVQSLTGKPDDQRTSKAKPR- 73

Query: 78  PPVAVADIATAFDHRKSEMGGGECRRVKTEDREEEEEEEEEEEEEEEALS---------- 137
                 D+     HR+ +        + TE   E E  ++E     E LS          
Sbjct: 74  -----RDMHRL--HRQVQ------DMINTEKLREPEHCDQEFCLNAEELSMTWNGNNGAG 133

Query: 138 -DVVGLWNDVVGFEGFIEELGEIPLLP 154
               G  N +  FEGFI+ELGE P LP
Sbjct: 134 ESSGGFLNGLGDFEGFIQELGEFPYLP 146

[Close]

BLAST of CmoCh14G004240 vs. TAIR10
Match: AT2G42140.1 (AT2G42140.1 VQ motif-containing protein)

HSP 1 Score: 66.2 bits (160), Expect = 2.1e-11
Identity = 59/166 (35.54%), Postives = 78/166 (46.99%), Query Frame = 1


Query: 4   IMKKRALLQNSARPAAMAVHAASHAISKPKPKIRIIHIFAPEIIKTDVANFRELVQRLTG 63
           + K+R+L         +A+H  S  ++K KPKIRIIHIFAPEIIKTDVANFRE+VQ LTG
Sbjct: 8   VQKRRSL-------PTIAMHKQSRTLTKSKPKIRIIHIFAPEIIKTDVANFREIVQNLTG 67

Query: 64  KPATAEEKIVPPQIPPVAVADIATAFDHRKSEMGGGECRRVKTEDREEEEEEEE------ 123
           K       +                  H+K        RR  + D  E  +  +      
Sbjct: 68  KQDHHHHDL-----------------PHQKGLKRNPRSRR--SHDHHEVHDMNKSHGFCI 127

Query: 124 EEEEEEEALSDVV----------GLWNDVVGFEGFIEELGEIPLLP 154
             +EEEE +  +           G  N +   +GFI+ELGE P LP
Sbjct: 128 NSDEEEEGMVSMTWNGNGDESSGGFLNGLGDLDGFIQELGEFPYLP 147

[Close]

BLAST of CmoCh14G004240 vs. TAIR10
Match: AT3G60090.1 (AT3G60090.1 VQ motif-containing protein)

HSP 1 Score: 63.5 bits (153), Expect = 1.4e-10
Identity = 39/77 (50.65%), Postives = 47/77 (61.04%), Query Frame = 1


Query: 26  SHAISKPKPKIRIIHIFAPEIIKTDVANFRELVQRLTGKP----ATAEEKI------VPP 85
           S  I+K KPKIRIIHIFAPEII TDV NFR LVQ LTGKP      +++KI       PP
Sbjct: 35  SQIITKIKPKIRIIHIFAPEIINTDVKNFRTLVQSLTGKPEITKTGSKKKITNTNFPAPP 94

Query: 86  QIPPVAVADIATAFDHR 93
            +P  +  +     D+R
Sbjct: 95  GLPQDSGQEHTAELDNR 111

[Close]

BLAST of CmoCh14G004240 vs. TAIR10
Match: AT2G44340.1 (AT2G44340.1 VQ motif-containing protein)

HSP 1 Score: 58.5 bits (140), Expect = 4.5e-09
Identity = 57/157 (36.31%), Postives = 74/157 (47.13%), Query Frame = 1


Query: 20  MAVHAASHAISKPKPKIRIIHIFAPEIIKTDVANFRELVQRLTGKPATAEEK-------- 79
           ++++  S  ISK KPKIRIIHIFAPE+IKTDV NFR LVQ LTGKPA  E K        
Sbjct: 17  VSMNRNSQVISKIKPKIRIIHIFAPEVIKTDVKNFRSLVQSLTGKPAPGEAKTGKKRAKS 76

Query: 80  -IVPPQIPPVAVADIATAFDHRKSEMGGGECRRVKTEDREEEEEEEEEEEEEEEALSDVV 139
            I  PQ P   V D     DH+      G    +      + +EE    ++         
Sbjct: 77  RITTPQEP---VCD-----DHQPVNRLSGFTGLLANGGNHQVKEEWGSGDQSTSNT---- 136

Query: 140 GLWNDVVGFEGFIEELGE-----IPLLPSAHQIMHGF 163
              N     EG I+++GE      P+  S+   + GF
Sbjct: 137 ---NTYFDLEGLIQDVGEDYFSSFPMRSSSSSQVEGF 158

[Close]

BLAST of CmoCh14G004240 vs. NCBI nr
Match: gi|449437914|ref|XP_004136735.1| (PREDICTED: VQ motif-containing protein 25-like [Cucumis sativus])

HSP 1 Score: 208.0 bits (528), Expect = 1.3e-50
Identity = 121/175 (69.14%), Postives = 141/175 (80.57%), Query Frame = 1


Query: 1   MEAIMKKRA-----LLQNSARPAAMAVHAASHAISKPKPKIRIIHIFAPEIIKTDVANFR 60
           MEAI+ K+      LL  SARP++MA+H+ASH ISKPKPKIRIIHIFAPEIIKTDVANFR
Sbjct: 1   MEAILIKKQRQRPHLLPTSARPSSMALHSASHPISKPKPKIRIIHIFAPEIIKTDVANFR 60

Query: 61  ELVQRLTGKP-ATAEEKIVPPQIPPVAVADIATAFDHRKSE-MGGGECRRVKTEDREEEE 120
           ELVQRLTGKP AT + KI+PP+IPP      A AFD+RK+E + G  CRR      ++E+
Sbjct: 61  ELVQRLTGKPEATEDGKILPPEIPP------AAAFDNRKTEIVSGVGCRRRMV---KKED 120

Query: 121 EEEEEEEEEEEALSDVVGLWNDVVGFEGFIEELGEIPLLPSAHQIMHGFEETQFA 169
           E +EE+EEEEE L DVVG+WNDVVGFEGFI+ELGE PL+PSAHQIMHGFEETQFA
Sbjct: 121 EYQEEDEEEEEMLEDVVGMWNDVVGFEGFIQELGEFPLIPSAHQIMHGFEETQFA 166

[Close]

BLAST of CmoCh14G004240 vs. NCBI nr
Match: gi|659084764|ref|XP_008443061.1| (PREDICTED: nucleosome assembly protein 1-like 5 [Cucumis melo])

HSP 1 Score: 201.1 bits (510), Expect = 1.6e-48
Identity = 123/184 (66.85%), Postives = 140/184 (76.09%), Query Frame = 1


Query: 1   MEAIMKKRA----LLQNSARPAAMAVHAASHAISKPKPKIRIIHIFAPEIIKTDVANFRE 60
           M+AI+K +     LL  S RP+ M +H+ASHAISKPKPKIRIIHIFAPEIIKTDVANFRE
Sbjct: 1   MDAILKNQRQRPHLLPTSPRPSTMPLHSASHAISKPKPKIRIIHIFAPEIIKTDVANFRE 60

Query: 61  LVQRLTGKP---ATAEEKIVPPQIPPVAVADIATAFDHRKSEMGGGECRR-VKTEDREEE 120
           LVQRLTGKP    T E+KI+PPQIP  A      AFD+RK+EM    CRR VK ED ++E
Sbjct: 61  LVQRLTGKPEAITTQEDKILPPQIPAAA------AFDNRKTEMVS--CRRMVKKEDEDQE 120

Query: 121 E---EEEEEEE------EEEEALSDVVGLWNDVVGFEGFIEELGEIPLLPSAHQIMHGFE 168
           E   EEEEEEE      EEEE L +VVG+WNDVVGFEGFI+ELGE PL+PSAHQIMHGFE
Sbjct: 121 EDYDEEEEEEEGEGEGEEEEEMLDEVVGMWNDVVGFEGFIQELGEFPLIPSAHQIMHGFE 176

[Close]

BLAST of CmoCh14G004240 vs. NCBI nr
Match: gi|700204172|gb|KGN59305.1| (hypothetical protein Csa_3G807350 [Cucumis sativus])

HSP 1 Score: 171.4 bits (433), Expect = 1.3e-39
Identity = 104/157 (66.24%), Postives = 123/157 (78.34%), Query Frame = 1


Query: 1   MEAIMKKRA-----LLQNSARPAAMAVHAASHAISKPKPKIRIIHIFAPEIIKTDVANFR 60
           MEAI+ K+      LL  SARP++MA+H+ASH ISKPKPKIRIIHIFAPEIIKTDVANFR
Sbjct: 1   MEAILIKKQRQRPHLLPTSARPSSMALHSASHPISKPKPKIRIIHIFAPEIIKTDVANFR 60

Query: 61  ELVQRLTGKP-ATAEEKIVPPQIPPVAVADIATAFDHRKSE-MGGGECRRVKTEDREEEE 120
           ELVQRLTGKP AT + KI+PP+IPP      A AFD+RK+E + G  CRR      ++E+
Sbjct: 61  ELVQRLTGKPEATEDGKILPPEIPP------AAAFDNRKTEIVSGVGCRRRMV---KKED 120

Query: 121 EEEEEEEEEEEALSDVVGLWNDVVGFEGFIEELGEIP 151
           E +EE+EEEEE L DVVG+WNDVVGFEGFI+ELGE P
Sbjct: 121 EYQEEDEEEEEMLEDVVGMWNDVVGFEGFIQELGEFP 148

[Close]

BLAST of CmoCh14G004240 vs. NCBI nr
Match: gi|590636957|ref|XP_007028986.1| (VQ motif-containing protein, putative [Theobroma cacao])

HSP 1 Score: 112.5 bits (280), Expect = 7.4e-22
Identity = 82/187 (43.85%), Postives = 100/187 (53.48%), Query Frame = 1


Query: 1   MEAIMKKRALLQNSARPAAMAVHAASHAISKPKPKIRIIHIFAPEIIKTDVANFRELVQR 60
           ME IM +       + P+A+++H  S  ISK KPKIRIIHIFAPEIIKTDVANFRELVQR
Sbjct: 46  MENIMIRNQTRMPPSTPSALSIHKDSQTISKAKPKIRIIHIFAPEIIKTDVANFRELVQR 105

Query: 61  LTGKPA----------TAEEKIVPPQIPPVAVADIATAFDHRKSEMGGGECRRVKTEDRE 120
           LTGKPA                  P+I       +A A   +K E+  G    ++T +R 
Sbjct: 106 LTGKPAQEKGCKKKARIGRRDHQEPRITRFCDKPVAAAV-AKKMELRTGFLAGLETRERV 165

Query: 121 EEEEEEEEEEEEEEALSDVVGLWND------VVGF---EGFIEELGEIPLLPSAHQIMHG 169
           +EEE                G+WND      + GF   +GFI+ELGE PLLP     MHG
Sbjct: 166 KEEE----------------GMWNDENSGGFLSGFGDLDGFIQELGEFPLLPLDASHMHG 215

[Close]

BLAST of CmoCh14G004240 vs. NCBI nr
Match: gi|1009161541|ref|XP_015898955.1| (PREDICTED: VQ motif-containing protein 25 [Ziziphus jujuba])

HSP 1 Score: 97.1 bits (240), Expect = 3.2e-17
Identity = 70/149 (46.98%), Postives = 91/149 (61.07%), Query Frame = 1


Query: 20  MAVHAASHAISKPKPKIRIIHIFAPEIIKTDVANFRELVQRLTGKPAT---AEEKIVPPQ 79
           +A+H  S  ISK KPKIRIIHIFAPEIIKTDVANFRELVQRLTGKP      ++KI  P+
Sbjct: 30  LAIHKDSKTISKTKPKIRIIHIFAPEIIKTDVANFRELVQRLTGKPTEVVHCKKKIKKPR 89

Query: 80  IPPVAVADI--ATAFDHRKSEMGGGECRRVKTEDREEEEEEEEEEEEEEEALSDVVGLWN 139
           +     + +  ++AF  +K E+  G   R   + +E  +EEEEE     E     +  + 
Sbjct: 90  VSGREESKMISSSAFSDKKLELKSG--FRAALDAKERVKEEEEEGMWISENSGGFLDRFA 149

Query: 140 DVVGFEGFIEELGEIPLLPSAHQIMHGFE 164
           D+ GF  +I+ELGE P+LP     MHG E
Sbjct: 150 DLEGF-NYIQELGEFPMLPLDTSHMHGLE 175

The following BLAST results are available for this feature:

BLAST of CmoCh14G004240 vs. Swiss-Prot


Match Name	E-value	Identity	Description
VQ25_ARATH	2.8e-13	43.54	VQ motif-containing protein 25 OS=Arabidopsis thaliana GN=VQ25 PE=3 SV=1	[more]
VQ17_ARATH	3.8e-10	35.54	VQ motif-containing protein 17 OS=Arabidopsis thaliana GN=VQ17 PE=2 SV=1	[more]
VQ18_ARATH	7.9e-08	36.31	VQ motif-containing protein 18 OS=Arabidopsis thaliana GN=VQ18 PE=3 SV=1	[more]

BLAST of CmoCh14G004240 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBB1_CUCSA	9.3e-40	66.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G807350 PE=4 SV=1	[more]
A0A061EXT4_THECC	5.1e-22	43.85	VQ motif-containing protein, putative OS=Theobroma cacao GN=TCM_024904 PE=4 SV=1	[more]
A0A0D2RRJ1_GOSRA	9.4e-16	42.77	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G068000 PE=4 SV=1	[more]
A0A067FXP8_CITSI	4.7e-15	44.81	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g044113mg PE=4 SV=1	[more]
B9IHZ2_POPTR	4.7e-15	40.57	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s04530g PE=4 SV=2	[more]

BLAST of CmoCh14G004240 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G58000.1	1.6e-14	43.54	VQ motif-containing protein	[more]
AT2G42140.1	2.1e-11	35.54	VQ motif-containing protein	[more]
AT3G60090.1	1.4e-10	50.65	VQ motif-containing protein	[more]
AT2G44340.1	4.5e-09	36.31	VQ motif-containing protein	[more]

BLAST of CmoCh14G004240 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449437914\|ref\|XP_004136735.1\|	1.3e-50	69.14	PREDICTED: VQ motif-containing protein 25-like [Cucumis sativus]	[more]
gi\|659084764\|ref\|XP_008443061.1\|	1.6e-48	66.85	PREDICTED: nucleosome assembly protein 1-like 5 [Cucumis melo]	[more]
gi\|700204172\|gb\|KGN59305.1\|	1.3e-39	66.24	hypothetical protein Csa_3G807350 [Cucumis sativus]	[more]
gi\|590636957\|ref\|XP_007028986.1\|	7.4e-22	43.85	VQ motif-containing protein, putative [Theobroma cacao]	[more]
gi\|1009161541\|ref\|XP_015898955.1\|	3.2e-17	46.98	PREDICTED: VQ motif-containing protein 25 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008889	VQ

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G004240.1	CmoCh14G004240.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 41..67 score: 4.8
None	No IPR available	unknown	Coil	Coil	coord: 101..129 scor
None	No IPR available	PANTHER	PTHR33143	FAMILY NOT NAMED	coord: 17..153 score: 2.9
None	No IPR available	PANTHER	PTHR33143:SF12	SUBFAMILY NOT NAMED	coord: 17..153 score: 2.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh14G004240	Cucsa.242710	Cucumber (Gy14) v1	cgycmoB0675
CmoCh14G004240	CmaCh14G004200	Cucurbita maxima (Rimu)	cmacmoB244
CmoCh14G004240	Cla017540	Watermelon (97103) v1	cmowmB214
CmoCh14G004240	Csa3G807350	Cucumber (Chinese Long) v2	cmocuB226
CmoCh14G004240	MELO3C009629	Melon (DHL92) v3.5.1	cmomeB215
CmoCh14G004240	ClCG10G017500	Watermelon (Charleston Gray)	cmowcgB207
CmoCh14G004240	CSPI03G36510	Wild cucumber (PI 183967)	cmocpiB229
CmoCh14G004240	Lsi03G017320	Bottle gourd (USVL1VR-Ls)	cmolsiB230
CmoCh14G004240	MELO3C009629.2	Melon (DHL92) v3.6.1	cmomedB244
CmoCh14G004240	CsaV3_3G038860	Cucumber (Chinese Long) v3	cmocucB0270
CmoCh14G004240	Cla97C10G200360	Watermelon (97103) v2	cmowmbB230
CmoCh14G004240	Bhi11G002125	Wax gourd	cmowgoB0283
CmoCh14G004240	CsGy3G033970	Cucumber (Gy14) v2	cgybcmoB279
CmoCh14G004240	Carg03567	Silver-seed gourd	carcmoB0347

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh14G004240	Silver-seed gourd	carcmoB0213
CmoCh14G004240	Wax gourd	cmowgoB0351
CmoCh14G004240	Cucurbita moschata (Rifu)	cmocmoB225
CmoCh14G004240	Cucurbita maxima (Rimu)	cmacmoB798
CmoCh14G004240	Cucurbita pepo (Zucchini)	cmocpeB245
CmoCh14G004240	Cucurbita pepo (Zucchini)	cmocpeB255
CmoCh14G004240	Cucumber (Gy14) v2	cgybcmoB898