Lsi03G006180 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G006180
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Cysteine-rich venom protein
Location	chr03 : 7703271 .. 7703741 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGTTTTTCAACTCCATCTTCTTTTCTTGGCCCTTATAGTTAAATCTTCTTATGCCCAAAACTCAGCTCAAGACTACATCAATGGCCACAACTCAGCAAGATCAATAGTGGGTGTTGGAAATATGGTATGGAACACAACTCTTGCCGCCTATGCTCAAACATATGCCAACTCAAGGAAAGCTGATTGCCAATTGGTGCATTCCAATGGGCCTTATGGAGAGAACCTAGCAAAGGGCAACAATGGATTCACTGGCTCAGCTGCAGTGAAGCTATGGGTTGATGAAAAGCCTTACTATAGTCATAATAACAATGCATGTGTTGGTGGTGAGTGTCTTCATTACACTCAAGTTGTTTGGCAAAGCTCTTATAGAGTTGGATGTGCAAGAGTTCAATGCAATGATGGTTGGTGGTTTGTGTCTTGCAATTATGATCCTCCAGGCAATTGGGATGGGGAGTGGCCTTATTAG

mRNA sequence

ATGAGTGTTTTTCAACTCCATCTTCTTTTCTTGGCCCTTATAGTTAAATCTTCTTATGCCCAAAACTCAGCTCAAGACTACATCAATGGCCACAACTCAGCAAGATCAATAGTGGGTGTTGGAAATATGGTATGGAACACAACTCTTGCCGCCTATGCTCAAACATATGCCAACTCAAGGAAAGCTGATTGCCAATTGGTGCATTCCAATGGGCCTTATGGAGAGAACCTAGCAAAGGGCAACAATGGATTCACTGGCTCAGCTGCAGTGAAGCTATGGGTTGATGAAAAGCCTTACTATAGTCATAATAACAATGCATGTGTTGGTGGTGAGTGTCTTCATTACACTCAAGTTGTTTGGCAAAGCTCTTATAGAGTTGGATGTGCAAGAGTTCAATGCAATGATGGTTGGTGGTTTGTGTCTTGCAATTATGATCCTCCAGGCAATTGGGATGGGGAGTGGCCTTATTAG

Coding sequence (CDS)

ATGAGTGTTTTTCAACTCCATCTTCTTTTCTTGGCCCTTATAGTTAAATCTTCTTATGCCCAAAACTCAGCTCAAGACTACATCAATGGCCACAACTCAGCAAGATCAATAGTGGGTGTTGGAAATATGGTATGGAACACAACTCTTGCCGCCTATGCTCAAACATATGCCAACTCAAGGAAAGCTGATTGCCAATTGGTGCATTCCAATGGGCCTTATGGAGAGAACCTAGCAAAGGGCAACAATGGATTCACTGGCTCAGCTGCAGTGAAGCTATGGGTTGATGAAAAGCCTTACTATAGTCATAATAACAATGCATGTGTTGGTGGTGAGTGTCTTCATTACACTCAAGTTGTTTGGCAAAGCTCTTATAGAGTTGGATGTGCAAGAGTTCAATGCAATGATGGTTGGTGGTTTGTGTCTTGCAATTATGATCCTCCAGGCAATTGGGATGGGGAGTGGCCTTATTAG

Protein sequence

MSVFQLHLLFLALIVKSSYAQNSAQDYINGHNSARSIVGVGNMVWNTTLAAYAQTYANSRKADCQLVHSNGPYGENLAKGNNGFTGSAAVKLWVDEKPYYSHNNNACVGGECLHYTQVVWQSSYRVGCARVQCNDGWWFVSCNYDPPGNWDGEWPY

Homology

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BLAST of Lsi03G006180 vs. Swiss-Prot
Match: PRB1_TOBAC (Basic form of pathogenesis-related protein 1 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 7.0e-51
Identity = 87/145 (60.00%), Postives = 113/145 (77.93%), Query Frame = 1


Query: 12  ALIVKSSYAQNSAQDYINGHNSARSIVGVGNMVWNTTLAAYAQTYANSRKADCQLVHSNG 71
           A+++ SS AQNS QDY+N HN+AR  VGVG M W+  LAAYAQ YAN R  DC ++HS+G
Sbjct: 15  AILIHSSKAQNSPQDYLNPHNAARRQVGVGPMTWDNRLAAYAQNYANQRIGDCGMIHSHG 74

Query: 72  PYGENLAKGNNGFTGSAAVKLWVDEKPYYSHNNNACVGGECLHYTQVVWQSSYRVGCARV 131
           PYGENLA        + AVK+WVDEK +Y +N+N+CVGG C HYTQVVW++S R+GCARV
Sbjct: 75  PYGENLAAAFPQLNAAGAVKMWVDEKRFYDYNSNSCVGGVCGHYTQVVWRNSVRLGCARV 134

Query: 132 QCNDGWWFVSCNYDPPGNWDGEWPY 157
           + N+GW+F++CNYDPPGN+ G+ P+
Sbjct: 135 RSNNGWFFITCNYDPPGNFIGQRPF 159

[Close]

BLAST of Lsi03G006180 vs. Swiss-Prot
Match: PR06_SOLLC (Pathogenesis-related leaf protein 6 OS=Solanum lycopersicum GN=PR1B1 PE=1 SV=2)

HSP 1 Score: 194.1 bits (492), Expect = 1.1e-48
Identity = 92/161 (57.14%), Postives = 114/161 (70.81%), Query Frame = 1


Query: 1   MSVFQLHLLFLALIVKSSY----AQNSAQDYINGHNSARSIVGVGNMVWNTTLAAYAQTY 60
           M +F + LL   L+V + +    AQNS QDY+  HN AR+ VGVG M W+  LA+ AQ Y
Sbjct: 1   MGLFNISLLLTCLMVLAIFHSCEAQNSPQDYLAVHNDARAQVGVGPMSWDANLASRAQNY 60

Query: 61  ANSRKADCQLVHSNGPYGENLAKGNNGFTGSAAVKLWVDEKPYYSHNNNACVGGE-CLHY 120
           ANSR  DC L+HS    GENLAKG   FTG AAV+LWV E+P Y++  N CVGG+ C HY
Sbjct: 61  ANSRAGDCNLIHSGA--GENLAKGGGDFTGRAAVQLWVSERPSYNYATNQCVGGKKCRHY 120

Query: 121 TQVVWQSSYRVGCARVQCNDGWWFVSCNYDPPGNWDGEWPY 157
           TQVVW++S R+GC R +CN+GWWF+SCNYDP GNW G+ PY
Sbjct: 121 TQVVWRNSVRLGCGRARCNNGWWFISCNYDPVGNWIGQRPY 159

[Close]

BLAST of Lsi03G006180 vs. Swiss-Prot
Match: PR04_SOLLC (Pathogenesis-related leaf protein 4 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.1e-48
Identity = 93/161 (57.76%), Postives = 114/161 (70.81%), Query Frame = 1


Query: 1   MSVFQLHLLFLALIVKSSY----AQNSAQDYINGHNSARSIVGVGNMVWNTTLAAYAQTY 60
           M +F + LL   L+V + +    AQNS QDY+  HN AR+ VGVG M W+  LA+ AQ Y
Sbjct: 1   MGLFNISLLLTCLMVLAIFHSCEAQNSPQDYLAVHNDARAQVGVGPMSWDANLASRAQNY 60

Query: 61  ANSRKADCQLVHSNGPYGENLAKGNNGFTGSAAVKLWVDEKPYYSHNNNACVGGE-CLHY 120
           ANSR  DC L+HS    GENLAKG   FTG AAV+LWV E+P Y++  N CVGG+ C HY
Sbjct: 61  ANSRAGDCNLIHSGA--GENLAKGGGDFTGRAAVQLWVSERPDYNYATNQCVGGKMCGHY 120

Query: 121 TQVVWQSSYRVGCARVQCNDGWWFVSCNYDPPGNWDGEWPY 157
           TQVVW++S R+GC R +CN+GWWF+SCNYDP GNW GE PY
Sbjct: 121 TQVVWRNSVRLGCGRARCNNGWWFISCNYDPVGNWVGERPY 159

[Close]

BLAST of Lsi03G006180 vs. Swiss-Prot
Match: PR1A_TOBAC (Pathogenesis-related protein 1A OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.2e-47
Identity = 90/151 (59.60%), Postives = 113/151 (74.83%), Query Frame = 1


Query: 8   LLFLALIVKSSYAQNSAQDYINGHNSARSIVGVGNMVWNTTLAAYAQTYANSRKADCQLV 67
           LL   +I  S  AQNS QDY++ HN+AR+ VGV  + W+  +AAYAQ YA+   ADC LV
Sbjct: 18  LLLFLVISHSCRAQNSQQDYLDAHNTARADVGVEPLTWDDQVAAYAQNYASQLAADCNLV 77

Query: 68  HSNGPYGENLAKGNNGF-TGSAAVKLWVDEKPYYSHNNNACVGGE-CLHYTQVVWQSSYR 127
           HS+G YGENLA+G+  F T + AV++WVDEK YY H++N C  G+ C HYTQVVW++S R
Sbjct: 78  HSHGQYGENLAEGSGDFMTAAKAVEMWVDEKQYYDHDSNTCAQGQVCGHYTQVVWRNSVR 137

Query: 128 VGCARVQCNDGWWFVSCNYDPPGNWDGEWPY 157
           VGCARVQCN+G + VSCNYDPPGN+ GE PY
Sbjct: 138 VGCARVQCNNGGYVVSCNYDPPGNYRGESPY 168

[Close]

BLAST of Lsi03G006180 vs. Swiss-Prot
Match: PR1B_TOBAC (Pathogenesis-related protein 1B OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.1e-46
Identity = 91/158 (57.59%), Postives = 117/158 (74.05%), Query Frame = 1


Query: 2   SVFQLHLLFLALIVK-SSYAQNSAQDYINGHNSARSIVGVGNMVWNTTLAAYAQTYANSR 61
           S F +  L L LI+  SS+AQNS QDY++ HN+AR+ VGV  + W+  +AAYAQ Y +  
Sbjct: 11  SFFLVSTLLLFLIISHSSHAQNSQQDYLDAHNTARADVGVEPLTWDNGVAAYAQNYVSQL 70

Query: 62  KADCQLVHSNGPYGENLAKGNNGF-TGSAAVKLWVDEKPYYSHNNNACVGGE-CLHYTQV 121
            ADC LVHS+G YGENLA+G+  F T + AV++WVDEK YY H++N C  G+ C HYTQV
Sbjct: 71  AADCNLVHSHGQYGENLAQGSGDFMTAAKAVEMWVDEKQYYDHDSNTCAQGQVCGHYTQV 130

Query: 122 VWQSSYRVGCARVQCNDGWWFVSCNYDPPGNWDGEWPY 157
           VW++S RVGCARV+CN+G + VSCNYDPPGN  G+ PY
Sbjct: 131 VWRNSVRVGCARVKCNNGGYVVSCNYDPPGNVIGQSPY 168

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BLAST of Lsi03G006180 vs. TrEMBL
Match: A0A0A0K2D0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070252 PE=3 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 6.4e-75
Identity = 130/157 (82.80%), Postives = 145/157 (92.36%), Query Frame = 1


Query: 1   MSVFQLHLL-FLALIVKSSYAQNSAQDYINGHNSARSIVGVGNMVWNTTLAAYAQTYANS 60
           MSVFQL LL  + L++K   AQNSAQDYINGHNSARS VGVGN+VWNTTLAAYAQTYANS
Sbjct: 7   MSVFQLFLLAVVVLVLKRCEAQNSAQDYINGHNSARSTVGVGNIVWNTTLAAYAQTYANS 66

Query: 61  RKADCQLVHSNGPYGENLAKGNNGFTGSAAVKLWVDEKPYYSHNNNACVGGECLHYTQVV 120
           RK+DCQL+HSNGPYGEN+AKGNNGF+G+AAVKLWVDEKPYYS++ NAC GGECLHYTQVV
Sbjct: 67  RKSDCQLIHSNGPYGENIAKGNNGFSGAAAVKLWVDEKPYYSYSKNACDGGECLHYTQVV 126

Query: 121 WQSSYRVGCARVQCNDGWWFVSCNYDPPGNWDGEWPY 157
           W++SYRVGCARVQCN+GWWF+SCNYDPPGNWD E PY
Sbjct: 127 WETSYRVGCARVQCNNGWWFISCNYDPPGNWDEERPY 163

[Close]

BLAST of Lsi03G006180 vs. TrEMBL
Match: B9HN40_POPTR (Pathogenesis-related family protein OS=Populus trichocarpa GN=POPTR_0009s08700g PE=3 SV=2)

HSP 1 Score: 231.5 bits (589), Expect = 7.1e-58
Identity = 104/151 (68.87%), Postives = 126/151 (83.44%), Query Frame = 1


Query: 6   LHLLFLALIVKSSYAQNSAQDYINGHNSARSIVGVGNMVWNTTLAAYAQTYANSRKADCQ 65
           ++L+ LAL    S+AQNS QDY+N HN+ARS V V N++W+ T+AAYA  YANSR +DC 
Sbjct: 11  VYLVSLAL-AHPSHAQNSQQDYLNAHNAARSQVTVANIIWDNTVAAYALNYANSRISDCN 70

Query: 66  LVHSNGPYGENLAKGNNGFTGSAAVKLWVDEKPYYSHNNNACVGGECLHYTQVVWQSSYR 125
           LVHSNGPYGENLAKG+  FTG+AAV LWV EKPYY + +N+CVGG+CLHYTQVVW++S R
Sbjct: 71  LVHSNGPYGENLAKGSGSFTGTAAVNLWVAEKPYYDYASNSCVGGQCLHYTQVVWRNSVR 130

Query: 126 VGCARVQCNDGWWFVSCNYDPPGNWDGEWPY 157
           VGCARV+C +GWWFVSCNYDPPGN+ GE PY
Sbjct: 131 VGCARVKCTNGWWFVSCNYDPPGNYIGERPY 160

[Close]

BLAST of Lsi03G006180 vs. TrEMBL
Match: F6HBN8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0088g00700 PE=3 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 4.6e-57
Identity = 98/137 (71.53%), Postives = 115/137 (83.94%), Query Frame = 1


Query: 20  AQNSAQDYINGHNSARSIVGVGNMVWNTTLAAYAQTYANSRKADCQLVHSNGPYGENLAK 79
           AQNS QDY+N HN+AR+ VGVG+M WN T+AAYAQ YAN R +DC LVHS GPYGENLAK
Sbjct: 25  AQNSPQDYVNAHNAARAQVGVGSMTWNDTVAAYAQNYANKRISDCNLVHSGGPYGENLAK 84

Query: 80  GNNGFTGSAAVKLWVDEKPYYSHNNNACVGGECLHYTQVVWQSSYRVGCARVQCNDGWWF 139
           G+   TG+ AV LWV EKP Y +N+N+CVGGECLHYTQVVW +S R+GCARVQCN+GWWF
Sbjct: 85  GSGSLTGTDAVNLWVGEKPNYDYNSNSCVGGECLHYTQVVWSNSVRLGCARVQCNNGWWF 144

Query: 140 VSCNYDPPGNWDGEWPY 157
           V+CNYDPPGN+ G+ PY
Sbjct: 145 VTCNYDPPGNYVGQRPY 161

[Close]

BLAST of Lsi03G006180 vs. TrEMBL
Match: E2GEW7_9ROSI (Pathogenesis-related protein 1 OS=Vitis hybrid cultivar GN=PR-1 PE=3 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.3e-56
Identity = 103/161 (63.98%), Postives = 125/161 (77.64%), Query Frame = 1


Query: 1   MSVFQLHLLFLALIVKSSYA-----QNSAQDYINGHNSARSIVGVGNMVWNTTLAAYAQT 60
           M +F++ L  L  +V  + A     QNS QDY+N HN+AR+ VGVG+M WN T+AAYAQ 
Sbjct: 1   MGLFKISLPLLVGLVGLALAHVCCAQNSPQDYVNAHNAARAQVGVGSMTWNDTVAAYAQN 60

Query: 61  YANSRKADCQLVHSNGPYGENLAKGNNGFTGSAAVKLWVDEKPYYSHNNNACVGGECLHY 120
           YAN R +DC LVHS GPYGENLAKG+   TG+ AV LWV EKP Y +N+N+CVGGECLHY
Sbjct: 61  YANKRISDCNLVHSGGPYGENLAKGSGSLTGTDAVNLWVGEKPNYDYNSNSCVGGECLHY 120

Query: 121 TQVVWQSSYRVGCARVQCNDGWWFVSCNYDPPGNWDGEWPY 157
           TQVVW +S R+GCARVQCN+GWWFV+CNYDPPGN+ G+ PY
Sbjct: 121 TQVVWSNSVRLGCARVQCNNGWWFVTCNYDPPGNYVGQRPY 161

[Close]

BLAST of Lsi03G006180 vs. TrEMBL
Match: D7TY78_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0097g00700 PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 1.7e-56
Identity = 101/156 (64.74%), Postives = 124/156 (79.49%), Query Frame = 1


Query: 1   MSVFQLHLLFLALIVKSSYAQNSAQDYINGHNSARSIVGVGNMVWNTTLAAYAQTYANSR 60
           +SV    L+  AL+V +SYAQNS QDY+N HN+AR+ V VG M WN T+AAYAQ+YAN +
Sbjct: 6   ISVALACLIGSALLVHTSYAQNSQQDYLNAHNTARAQVSVGPMTWNNTVAAYAQSYANKQ 65

Query: 61  KADCQLVHSNGPYGENLAKGNNGFTGSAAVKLWVDEKPYYSHNNNACVGGECLHYTQVVW 120
             DC LVHSNGPYGENLAKG+  FTG+AAV LWV EKP Y +N+N+CVGGEC HYTQVVW
Sbjct: 66  IGDCNLVHSNGPYGENLAKGSGSFTGTAAVNLWVAEKPNYDYNSNSCVGGECRHYTQVVW 125

Query: 121 QSSYRVGCARVQCNDGWWFVSCNYDPPGNWDGEWPY 157
           ++S  +GCAR QCN+GWW++ CNY PPGN+ G+ PY
Sbjct: 126 RNSVSLGCARAQCNNGWWYIICNYYPPGNYIGQRPY 161

[Close]

BLAST of Lsi03G006180 vs. TAIR10
Match: AT1G50060.1 (AT1G50060.1 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein)

HSP 1 Score: 219.9 bits (559), Expect = 1.1e-57
Identity = 99/153 (64.71%), Postives = 125/153 (81.70%), Query Frame = 1


Query: 6   LHLLFLALIVKSSYAQNSAQDYINGHNSARSIVGVGNMVWNTTLAAYAQTYANSRKADCQ 65
           L ++ ++ +V ++ AQN+ QDY+N HN+AR+ VGV N+VW+TTLAAYA  Y+N RKADC 
Sbjct: 9   LVIVAISFLVVATNAQNTPQDYLNSHNTARAQVGVPNVVWDTTLAAYALNYSNFRKADCN 68

Query: 66  LVHSNGPYGENLAKG-NNGFTGSAAVKLWVDEKPYYSHNNNACVGG-ECLHYTQVVWQSS 125
           LVHSNGPYGENLAKG ++ F+  +AVKLWVDEKPYYS+  N C GG +CLHYTQVVW+ S
Sbjct: 69  LVHSNGPYGENLAKGSSSSFSAISAVKLWVDEKPYYSYAYNNCTGGKQCLHYTQVVWRDS 128

Query: 126 YRVGCARVQCNDGWWFVSCNYDPPGNWDGEWPY 157
            ++GCARVQC + WWFVSCNY+ PGNW GE+PY
Sbjct: 129 VKIGCARVQCTNTWWFVSCNYNSPGNWVGEYPY 161

[Close]

BLAST of Lsi03G006180 vs. TAIR10
Match: AT2G14580.1 (AT2G14580.1 basic pathogenesis-related protein 1)

HSP 1 Score: 182.6 bits (462), Expect = 1.9e-46
Identity = 82/137 (59.85%), Postives = 102/137 (74.45%), Query Frame = 1


Query: 20  AQNSAQDYINGHNSARSIVGVGNMVWNTTLAAYAQTYANSRKADCQLVHSNGPYGENLAK 79
           AQ+S QDY+N HN ARS +GVG M W+  LAAYA+ YAN  K DC+LVHS GPYGENLAK
Sbjct: 26  AQDSQQDYVNAHNQARSQIGVGPMQWDEGLAAYARNYANQLKGDCRLVHSRGPYGENLAK 85

Query: 80  GNNGFTGSAAVKLWVDEKPYYSHNNNACVGGECLHYTQVVWQSSYRVGCARVQCNDGWWF 139
                +G AAV LWV+EK  Y+++ N C  G C HYTQVVW++S R+GCA+V+CN+G   
Sbjct: 86  SGGDLSGVAAVNLWVNEKANYNYDTNTC-NGVCGHYTQVVWRNSVRLGCAKVRCNNGGTI 145

Query: 140 VSCNYDPPGNWDGEWPY 157
           +SCNYDPPGN+  + PY
Sbjct: 146 ISCNYDPPGNYANQKPY 161

[Close]

BLAST of Lsi03G006180 vs. TAIR10
Match: AT1G50050.1 (AT1G50050.1 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein)

HSP 1 Score: 179.5 bits (454), Expect = 1.6e-45
Identity = 84/143 (58.74%), Postives = 109/143 (76.22%), Query Frame = 1


Query: 6   LHLLFLALIVKSSYAQNSAQDYINGHNSARSIVGVGNMVWNTTLAAYAQTYANSRKADCQ 65
           L ++ ++ +V ++ AQN+ QDY+N HN+AR+ VGV N+VW+T +AAYA  YAN+RK DC 
Sbjct: 9   LIIVAISFLVLATNAQNAQQDYLNTHNTARAQVGVANVVWDTVVAAYATNYANARKVDCS 68

Query: 66  LVHS-NGPYGENLAKGNNG-FTGSAAVKLWVDEKPYYSHNNNACVGG-ECLHYTQVVWQS 125
           L  S  G YGENLA GNN  FTG AAV LWV+EKPYY++  NAC+G  +C HYTQVVW +
Sbjct: 69  LTPSTGGSYGENLANGNNALFTGVAAVNLWVNEKPYYNYTANACIGAQQCKHYTQVVWSN 128

Query: 126 SYRVGCARVQCNDGWWFVSCNYD 146
           S ++GCARV CN+G +FV CNYD
Sbjct: 129 SVKIGCARVLCNNGGYFVGCNYD 151

[Close]

BLAST of Lsi03G006180 vs. TAIR10
Match: AT4G33720.1 (AT4G33720.1 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein)

HSP 1 Score: 177.9 bits (450), Expect = 4.7e-45
Identity = 83/156 (53.21%), Postives = 111/156 (71.15%), Query Frame = 1


Query: 2   SVFQLHLLFLALIVKSSYAQNSAQDYINGHNSARSIVGVGNMVWNTTLAAYAQTYANSRK 61
           ++F     FL LIV    AQ+S QD++  HN AR+ VGVG + W+  +AAYA+ YAN RK
Sbjct: 9   NLFLAITFFLVLIVHLK-AQDSPQDFLAVHNRARAEVGVGPLRWDEKVAAYARNYANQRK 68

Query: 62  ADCQLVHSNGPYGENLAKGNNGFTGSAAVKLWVDEKPYYSHNNNACV-GGECLHYTQVVW 121
            DC + HS+G YGEN+A  +   TG AAV +WVDE+  Y +++N C    +C HYTQVVW
Sbjct: 69  GDCAMKHSSGSYGENIAWSSGSMTGVAAVDMWVDEQFDYDYDSNTCAWDKQCGHYTQVVW 128

Query: 122 QSSYRVGCARVQCNDGWWFVSCNYDPPGNWDGEWPY 157
           ++S R+GCA+V+CN+G  F++CNYDPPGNW GEWPY
Sbjct: 129 RNSERLGCAKVRCNNGQTFITCNYDPPGNWVGEWPY 163

[Close]

BLAST of Lsi03G006180 vs. TAIR10
Match: AT3G19690.1 (AT3G19690.1 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein)

HSP 1 Score: 169.5 bits (428), Expect = 1.7e-42
Identity = 77/161 (47.83%), Postives = 111/161 (68.94%), Query Frame = 1


Query: 1   MSVFQLHLLFLALIVK--SSYAQNSAQDYINGHNSARSIVGVGNMVWNTTLAAYAQTYAN 60
           MS+ + ++LFL  I     S A++  Q ++  HN AR+ VG+  +VW+  +AAYA +YAN
Sbjct: 1   MSLLKTNILFLLAIALFYGSLAEDLQQQFLEAHNEARNEVGLDPLVWDDEVAAYAASYAN 60

Query: 61  SRKADCQLVHSNGPYGENLAKGNNGFTGSAAVKLWVDEKPYYSHNNNAC---VGGECLHY 120
            R  DC LVHSNGP+GEN+A  +   +   A ++W++EK YY +++N C    GG CLHY
Sbjct: 61  QRINDCALVHSNGPFGENIAMSSGEMSAEDAAEMWINEKQYYDYDSNTCNDPNGGTCLHY 120

Query: 121 TQVVWQSSYRVGCARVQCNDGWWFVSCNYDPPGNWDGEWPY 157
           TQVVW+++ R+GCA+V CN G  F++CNYDPPGN+ GE P+
Sbjct: 121 TQVVWKNTVRLGCAKVVCNSGGTFITCNYDPPGNYIGEKPF 161

[Close]

BLAST of Lsi03G006180 vs. NCBI nr
Match: gi|659110131|ref|XP_008455065.1| (PREDICTED: pathogenesis-related leaf protein 6-like [Cucumis melo])

HSP 1 Score: 291.6 bits (745), Expect = 8.2e-76
Identity = 131/156 (83.97%), Postives = 143/156 (91.67%), Query Frame = 1


Query: 2   SVFQLHLL-FLALIVKSSYAQNSAQDYINGHNSARSIVGVGNMVWNTTLAAYAQTYANSR 61
           SVFQL LL  + L ++   AQNSAQDYINGHNSARS V VGN+VWN TLAAYAQTYANSR
Sbjct: 8   SVFQLFLLAVVVLTLRCCEAQNSAQDYINGHNSARSTVKVGNIVWNATLAAYAQTYANSR 67

Query: 62  KADCQLVHSNGPYGENLAKGNNGFTGSAAVKLWVDEKPYYSHNNNACVGGECLHYTQVVW 121
           K DCQL+HSNGPYGENLAKGNNGF+G+AAVKLWVDEKPYYS++NNAC GGECLHYTQVVW
Sbjct: 68  KGDCQLIHSNGPYGENLAKGNNGFSGAAAVKLWVDEKPYYSYSNNACNGGECLHYTQVVW 127

Query: 122 QSSYRVGCARVQCNDGWWFVSCNYDPPGNWDGEWPY 157
           ++SYRVGCARVQCNDGWWF+SCNYDPPGNWDGEWPY
Sbjct: 128 KTSYRVGCARVQCNDGWWFISCNYDPPGNWDGEWPY 163

[Close]

BLAST of Lsi03G006180 vs. NCBI nr
Match: gi|778724764|ref|XP_004136923.2| (PREDICTED: pathogenesis-related leaf protein 6-like [Cucumis sativus])

HSP 1 Score: 288.1 bits (736), Expect = 9.1e-75
Identity = 130/157 (82.80%), Postives = 145/157 (92.36%), Query Frame = 1


Query: 1   MSVFQLHLL-FLALIVKSSYAQNSAQDYINGHNSARSIVGVGNMVWNTTLAAYAQTYANS 60
           MSVFQL LL  + L++K   AQNSAQDYINGHNSARS VGVGN+VWNTTLAAYAQTYANS
Sbjct: 7   MSVFQLFLLAVVVLVLKRCEAQNSAQDYINGHNSARSTVGVGNIVWNTTLAAYAQTYANS 66

Query: 61  RKADCQLVHSNGPYGENLAKGNNGFTGSAAVKLWVDEKPYYSHNNNACVGGECLHYTQVV 120
           RK+DCQL+HSNGPYGEN+AKGNNGF+G+AAVKLWVDEKPYYS++ NAC GGECLHYTQVV
Sbjct: 67  RKSDCQLIHSNGPYGENIAKGNNGFSGAAAVKLWVDEKPYYSYSKNACDGGECLHYTQVV 126

Query: 121 WQSSYRVGCARVQCNDGWWFVSCNYDPPGNWDGEWPY 157
           W++SYRVGCARVQCN+GWWF+SCNYDPPGNWD E PY
Sbjct: 127 WETSYRVGCARVQCNNGWWFISCNYDPPGNWDEERPY 163

[Close]

BLAST of Lsi03G006180 vs. NCBI nr
Match: gi|727610581|ref|XP_010478439.1| (PREDICTED: pathogenesis-related leaf protein 6-like [Camelina sativa])

HSP 1 Score: 232.6 bits (592), Expect = 4.5e-58
Identity = 101/152 (66.45%), Postives = 125/152 (82.24%), Query Frame = 1


Query: 6   LHLLFLALIVKSSYAQNSAQDYINGHNSARSIVGVGNMVWNTTLAAYAQTYANSRKADCQ 65
           L ++ ++ +V ++ AQNS QDY+  HN+AR+ VGV N+VW+TT+A YA  YAN+RKA+C 
Sbjct: 9   LLIVAISFLVIATNAQNSQQDYLTAHNNARTQVGVANLVWDTTVATYALNYANTRKANCS 68

Query: 66  LVHSNGPYGENLAKGNNGFTGSAAVKLWVDEKPYYSHNNNACVGG-ECLHYTQVVWQSSY 125
           L+HSNGPYGENLAKG+  FT  AAVKLWVDEKPYYS+  NAC GG +CLHYTQVVW+ S 
Sbjct: 69  LIHSNGPYGENLAKGSGNFTAIAAVKLWVDEKPYYSYTTNACTGGQQCLHYTQVVWRESV 128

Query: 126 RVGCARVQCNDGWWFVSCNYDPPGNWDGEWPY 157
           ++GCARVQC +GWWFVSCNYD PGNW GE+PY
Sbjct: 129 KIGCARVQCTNGWWFVSCNYDAPGNWIGEYPY 160

[Close]

BLAST of Lsi03G006180 vs. NCBI nr
Match: gi|727578372|ref|XP_010461858.1| (PREDICTED: pathogenesis-related leaf protein 6-like [Camelina sativa])

HSP 1 Score: 232.6 bits (592), Expect = 4.5e-58
Identity = 101/152 (66.45%), Postives = 125/152 (82.24%), Query Frame = 1


Query: 6   LHLLFLALIVKSSYAQNSAQDYINGHNSARSIVGVGNMVWNTTLAAYAQTYANSRKADCQ 65
           L ++ ++ +V ++ AQNS QDY+  HN+AR+ VGV N+VW+TT+A YA  YAN+RKA+C 
Sbjct: 9   LLIVAISFLVIATTAQNSQQDYLTAHNNARAQVGVANLVWDTTVATYALNYANTRKANCS 68

Query: 66  LVHSNGPYGENLAKGNNGFTGSAAVKLWVDEKPYYSHNNNACVGG-ECLHYTQVVWQSSY 125
           L+HSNGPYGENLAKG+  FT  AAVKLWVDEKPYYS+  NAC GG +CLHYTQVVW+ S 
Sbjct: 69  LIHSNGPYGENLAKGSGNFTAIAAVKLWVDEKPYYSYTTNACTGGQQCLHYTQVVWRESV 128

Query: 126 RVGCARVQCNDGWWFVSCNYDPPGNWDGEWPY 157
           ++GCARVQC +GWWFVSCNYD PGNW GE+PY
Sbjct: 129 KIGCARVQCTNGWWFVSCNYDAPGNWIGEYPY 160

[Close]

BLAST of Lsi03G006180 vs. NCBI nr
Match: gi|727438432|ref|XP_010500562.1| (PREDICTED: pathogenesis-related leaf protein 6-like [Camelina sativa])

HSP 1 Score: 232.6 bits (592), Expect = 4.5e-58
Identity = 101/152 (66.45%), Postives = 125/152 (82.24%), Query Frame = 1


Query: 6   LHLLFLALIVKSSYAQNSAQDYINGHNSARSIVGVGNMVWNTTLAAYAQTYANSRKADCQ 65
           L ++ ++ +V ++ AQNS QDY+  HN+AR+ VGV N+VW+TT+A YA  YAN+RKA+C 
Sbjct: 9   LLIVAISFLVIATNAQNSQQDYLTAHNNARAQVGVANLVWDTTVATYALNYANTRKANCS 68

Query: 66  LVHSNGPYGENLAKGNNGFTGSAAVKLWVDEKPYYSHNNNACVGG-ECLHYTQVVWQSSY 125
           L+HSNGPYGENLAKG+  FT  AAVKLWVDEKPYYS+  NAC GG +CLHYTQVVW+ S 
Sbjct: 69  LIHSNGPYGENLAKGSGNFTAIAAVKLWVDEKPYYSYTTNACTGGQQCLHYTQVVWRESV 128

Query: 126 RVGCARVQCNDGWWFVSCNYDPPGNWDGEWPY 157
           ++GCARVQC +GWWFVSCNYD PGNW GE+PY
Sbjct: 129 KIGCARVQCTNGWWFVSCNYDAPGNWIGEYPY 160

The following BLAST results are available for this feature:

BLAST of Lsi03G006180 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PRB1_TOBAC	7.0e-51	60.00	Basic form of pathogenesis-related protein 1 OS=Nicotiana tabacum PE=3 SV=1	[more]
PR06_SOLLC	1.1e-48	57.14	Pathogenesis-related leaf protein 6 OS=Solanum lycopersicum GN=PR1B1 PE=1 SV=2	[more]
PR04_SOLLC	1.1e-48	57.76	Pathogenesis-related leaf protein 4 OS=Solanum lycopersicum PE=2 SV=1	[more]
PR1A_TOBAC	1.2e-47	59.60	Pathogenesis-related protein 1A OS=Nicotiana tabacum PE=1 SV=1	[more]
PR1B_TOBAC	1.1e-46	57.59	Pathogenesis-related protein 1B OS=Nicotiana tabacum PE=2 SV=1	[more]

BLAST of Lsi03G006180 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K2D0_CUCSA	6.4e-75	82.80	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070252 PE=3 SV=1	[more]
B9HN40_POPTR	7.1e-58	68.87	Pathogenesis-related family protein OS=Populus trichocarpa GN=POPTR_0009s08700g ...	[more]
F6HBN8_VITVI	4.6e-57	71.53	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0088g00700 PE=3 SV=...	[more]
E2GEW7_9ROSI	1.3e-56	63.98	Pathogenesis-related protein 1 OS=Vitis hybrid cultivar GN=PR-1 PE=3 SV=1	[more]
D7TY78_VITVI	1.7e-56	64.74	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0097g00700 PE=3 SV=...	[more]

BLAST of Lsi03G006180 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G50060.1	1.1e-57	64.71	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-r...	[more]
AT2G14580.1	1.9e-46	59.85	basic pathogenesis-related protein 1	[more]
AT1G50050.1	1.6e-45	58.74	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-r...	[more]
AT4G33720.1	4.7e-45	53.21	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-r...	[more]
AT3G19690.1	1.7e-42	47.83	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-r...	[more]

BLAST of Lsi03G006180 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659110131\|ref\|XP_008455065.1\|	8.2e-76	83.97	PREDICTED: pathogenesis-related leaf protein 6-like [Cucumis melo]	[more]
gi\|778724764\|ref\|XP_004136923.2\|	9.1e-75	82.80	PREDICTED: pathogenesis-related leaf protein 6-like [Cucumis sativus]	[more]
gi\|727610581\|ref\|XP_010478439.1\|	4.5e-58	66.45	PREDICTED: pathogenesis-related leaf protein 6-like [Camelina sativa]	[more]
gi\|727578372\|ref\|XP_010461858.1\|	4.5e-58	66.45	PREDICTED: pathogenesis-related leaf protein 6-like [Camelina sativa]	[more]
gi\|727438432\|ref\|XP_010500562.1\|	4.5e-58	66.45	PREDICTED: pathogenesis-related leaf protein 6-like [Camelina sativa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005576	extracellular region

Vocabulary: **INTERPRO**
Term	Definition
IPR018244	Allrgn_V5/Tpx1_CS
IPR014044	CAP_domain
IPR001283	Allrgn_V5/Tpx1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G006180.1	Lsi03G006180.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001283	Cysteine-rich secretory protein, allergen V5/Tpx-1-related	PRINTS	PR00837	V5TPXLIKE	coord: 43..61 score: 5.0E-18coord: 139..152 score: 5.0E-18coord: 89..102 score: 5.0E-18coord: 112..128 score: 5.0
IPR001283	Cysteine-rich secretory protein, allergen V5/Tpx-1-related	PANTHER	PTHR10334	CYSTEINE-RICH SECRETORY PROTEIN-RELATED	coord: 1..156 score: 1.1
IPR014044	CAP domain	GENE3D	G3DSA:3.40.33.10		coord: 22..156 score: 7.2
IPR014044	CAP domain	PFAM	PF00188	CAP	coord: 29..144 score: 8.0
IPR014044	CAP domain	SMART	SM00198	SCP_3	coord: 22..152 score: 1.2
IPR014044	CAP domain	unknown	SSF55797	PR-1-like	coord: 21..156 score: 6.8
IPR018244	Allergen V5/Tpx-1-related, conserved site	PROSITE	PS01010	CRISP_2	coord: 139..150 scor
None	No IPR available	PANTHER	PTHR10334:SF223	F2J10.6 PROTEIN-RELATED	coord: 1..156 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi03G006180	CSPI07G06640	Wild cucumber (PI 183967)	cpilsiB536
Lsi03G006180	Cucsa.218940	Cucumber (Gy14) v1	cgylsiB367
Lsi03G006180	CmaCh19G005280	Cucurbita maxima (Rimu)	cmalsiB484
Lsi03G006180	CmaCh04G004210	Cucurbita maxima (Rimu)	cmalsiB662
Lsi03G006180	CmoCh19G005410	Cucurbita moschata (Rifu)	cmolsiB468
Lsi03G006180	Cla001624	Watermelon (97103) v1	lsiwmB268
Lsi03G006180	Cla006469	Watermelon (97103) v1	lsiwmB245
Lsi03G006180	MELO3C018542	Melon (DHL92) v3.5.1	lsimeB247
Lsi03G006180	MELO3C018034	Melon (DHL92) v3.5.1	lsimeB268
Lsi03G006180	ClCG10G009890	Watermelon (Charleston Gray)	lsiwcgB223
Lsi03G006180	ClCG02G007220	Watermelon (Charleston Gray)	lsiwcgB233
Lsi03G006180	MELO3C018034.2	Melon (DHL92) v3.6.1	lsimedB281
Lsi03G006180	Bhi11G000894	Wax gourd	lsiwgoB307
Lsi03G006180	Bhi05G000860	Wax gourd	lsiwgoB319
Lsi03G006180	Cp4.1LG15g04200	Cucurbita pepo (Zucchini)	cpelsiB208
Lsi03G006180	CsaV3_7G007610	Cucumber (Chinese Long) v3	cuclsiB555

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Lsi03G006180	Lsi03G009960	Bottle gourd (USVL1VR-Ls)	lsilsiB126

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G006180	Melon (DHL92) v3.6.1	lsimedB260
Lsi03G006180	Watermelon (97103) v2	lsiwmbB226
Lsi03G006180	Wax gourd	lsiwgoB320
Lsi03G006180	Cucurbita maxima (Rimu)	cmalsiB116
Lsi03G006180	Cucurbita moschata (Rifu)	cmolsiB103
Lsi03G006180	Cucurbita moschata (Rifu)	cmolsiB650
Lsi03G006180	Cucurbita pepo (Zucchini)	cpelsiB543
Lsi03G006180	Cucumber (Chinese Long) v2	culsiB522